mRNA_H-elongata_contig142127.2912.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig142127.2912.1
Unique NamemRNA_H-elongata_contig142127.2912.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: D8LFZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ5_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.950e-40
Identity = 73/93 (78.49%), Postives = 83/93 (89.25%), Query Frame = 1
Query:   85 VPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFI 363
            +P+RYDHQTRLLPYVL+AIADEAE VS +A++TLS+CG EYEREHQ+D+IERRQFGVDGD R NH K LP PF  RPRIGARLYVRGNTRRF+
Sbjct:  318 LPDRYDHQTRLLPYVLNAIADEAEVVSTVAVETLSKCGAEYEREHQDDIIERRQFGVDGDIRANHTKPLPHPFPGRPRIGARLYVRGNTRRFL 410          
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A7S3MD77_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MD77_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.670e-31
Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 1
Query:   73 LIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFIEVRLSMNT---CDTKLKG 408
            L+  + +RYDH TRLLPYVL  + DE EGV+  AL TL +CG EYE EH++++ +RRQ+GVDGD+R+N  K LPRPF  RPRIG RLY+RG  +RF+   ++  T     T+LK 
Sbjct:   40 LLTEIGDRYDHHTRLLPYVLDLMTDENEGVANSALATLQKCGREYESEHEDEIKDRRQYGVDGDDRINLSKPLPRPFLERPRIGMRLYIRGTCKRFLNALVNELTNWVSTTRLKS 154          
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: K0RP77_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RP77_THAOC)

HSP 1 Score: 120 bits (300), Expect = 1.890e-29
Identity = 59/118 (50.00%), Postives = 80/118 (67.80%), Query Frame = 1
Query:   67 SRLIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFIEV---RLSMNTCDTKLKGV 411
            SRL+  +P+ YDHQTRLLPYVLS + D+   +   AL+ +++CG +YE EH++DVIER QFGVDGD  +++   LP PF+ RP +GARL+VR NT RF       LS    DT+ + V
Sbjct:   96 SRLLVYLPDSYDHQTRLLPYVLSFLCDDVPSIRAAALECIARCGRQYEEEHRDDVIERLQFGVDGDEAIDYDAGLPEPFASRPSLGARLFVRSNTGRFFLAVLGELSSWRADTRRRSV 213          
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A6U2L7V1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2L7V1_9STRA)

HSP 1 Score: 115 bits (289), Expect = 2.460e-27
Identity = 55/115 (47.83%), Postives = 75/115 (65.22%), Query Frame = 1
Query:   67 SRLIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFIEVRLSMNTCDTKLKGV 411
            +  +  +P+RYDHQ RLLPY+LS   D+ E + + A+  +  CG++YE EH +DVIERRQ+G+DGD   NH   LP PF  RP +GARL+VR NT+RF +    MN   + L  V
Sbjct:  511 ANFLVCLPDRYDHQQRLLPYLLSFFNDDVENIRLTAMSAVENCGQQYEVEHTDDVIERRQYGIDGDLGCNHTDPLPMPFQNRPTLGARLFVRANTKRFFQA--LMNELGSWLSAV 623          
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A7S1XY42_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY42_9STRA)

HSP 1 Score: 115 bits (288), Expect = 3.470e-27
Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1
Query:   76 IAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFIE 366
            +  +P+RYDH  RL PYVL+  AD    V+ + L+ +  CG EYEREH ++VIERRQFGVDGD R NH +  P PF+ RPRIGARL+VRG++ RF++
Sbjct:  450 VTELPDRYDHWPRLTPYVLNLCADVDPEVAQVGLEAIRLCGAEYEREHTDEVIERRQFGVDGDKRCNHARARPEPFADRPRIGARLFVRGHSIRFLK 546          
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A836C9Q8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 2.230e-26
Identity = 59/117 (50.43%), Postives = 71/117 (60.68%), Query Frame = 1
Query:   85 VPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSR------------------------RPRIGARLYVRGNTRRFI 363
            +P+RYDH TRLLPY+L+A+ DEA  V+  A+  L  CG EYEREH+ +VIERRQ+GVDGD R NH + LP PF R                        RPRIG RLY R  TRRF+
Sbjct:  491 LPDRYDHNTRLLPYLLAALTDEARPVADAAMAALQTCGAEYEREHEQEVIERRQYGVDGDARANHARPLPPPFGRCADDGSSSGXXXXXXXXXXXXXNGRPRIGVRLYARSLTRRFL 607          
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A7S4IRD0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IRD0_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.280e-26
Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   67 SRLIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRF 360
            S  +  +P+RYDH  RLLPY+LS   D        A+  +  CG++YE EH +++I+RRQ+GVDGD+  N    LP PF  RPR+GARL+VRGNT+RF
Sbjct:   49 SYFMVCLPDRYDHHQRLLPYLLSFYQDHMRSTRENAIAAVDYCGKQYEAEHPDEIIDRRQYGVDGDSHCNLDARLPSPFETRPRLGARLFVRGNTKRF 146          
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: B8C2S9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2S9_THAPS)

HSP 1 Score: 111 bits (278), Expect = 7.420e-26
Identity = 55/98 (56.12%), Postives = 69/98 (70.41%), Query Frame = 1
Query:   67 SRLIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRF 360
            S L+ ++P+RYDHQ RLLPYVLS I D +  V   AL  + +CG +YE EH  DVIERRQ GVDG+  +++   LP PF+ RP +GARLYVR NT RF
Sbjct:  479 SSLLVLLPDRYDHQQRLLPYVLSFINDNSVDVQEAALGCIEKCGSQYECEHPGDVIERRQLGVDGEATIDYDIGLPNPFTHRPSLGARLYVRSNTGRF 576          
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A7S2PXF7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXF7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.360e-25
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 1
Query:   73 LIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRF 360
            L+  +P+RYDH+ RLLPYVL  I D    V+  AL+ + +CG++YER+H +++IERRQFGVDGD+ +++   LP PF+ RP +GARL+VR NT RF
Sbjct:  433 LLINLPDRYDHEQRLLPYVLLFINDNVTEVTNAALECIDKCGDQYERDHSDEIIERRQFGVDGDDTIDYNAGLPTPFTCRPSLGARLFVRNNTSRF 528          
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A7S1CDH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDH1_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.030e-25
Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 1
Query:   40 RVVSHLPTSSRLIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFIEV---RLSMNTCDTKLKG 408
            R V HL   S     +P+R D+Q RLLPY+L+ +ADEA  V  +AL+ +   G ++E+EH +D+IER+Q+ VDGD R++H    P PF+ RPRIG RLYVR + RRFI+     L M   +TK+  
Sbjct:  353 RFVRHLGHWS---LTLPDRIDYQPRLLPYLLNGVADEAPNVHKVALEYMEALGAQFEKEHYDDIIERKQYAVDGDPRIDHESPYPPPFNTRPRIGTRLYVRQHCRRFIKAILKELGMWVHETKINA 475          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFZ5_ECTSI3.950e-4078.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3MD77_9STRA2.670e-3153.04Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
K0RP77_THAOC1.890e-2950.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A6U2L7V1_9STRA2.460e-2747.83Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1XY42_9STRA3.470e-2755.67Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A836C9Q8_9STRA2.230e-2650.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4IRD0_9STRA3.280e-2650.00Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
B8C2S9_THAPS7.420e-2656.12Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2PXF7_9STRA1.360e-2553.13Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1CDH1_9STRA9.030e-2546.03Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig142127contigH-elongata_contig142127:621..1154 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1.8e-34
Seed eggNOG ortholog2880.D8LFZ5
Preferred nameHEATR2
KEGG koko:K19759
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003008,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007600,GO:0007605,GO:0007610,GO:0007626,GO:0008150,GO:0008344,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030534,GO:0032501,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0040011,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0044782,GO:0045505,GO:0048870,GO:0050877,GO:0050954,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097722,GO:0120031,GO:0120036
EggNOG free text desc.inner dynein arm assembly
EggNOG OGs2CMTW@1,2QRXT@2759
Ec32 ortholog descriptionArmadillo domain protein
Ec32 orthologEc-21_005170.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size414
Cds size414
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929844.0673006-CDS-H-elongata_contig142127:620..8781622929844.0673006-CDS-H-elongata_contig142127:620..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142127 621..878 -
1691679180.3832712-CDS-H-elongata_contig142127:620..8781691679180.3832712-CDS-H-elongata_contig142127:620..878Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142127 621..878 -
1622929844.0829208-CDS-H-elongata_contig142127:998..11541622929844.0829208-CDS-H-elongata_contig142127:998..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142127 999..1154 -
1691679180.3953261-CDS-H-elongata_contig142127:998..11541691679180.3953261-CDS-H-elongata_contig142127:998..1154Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig142127 999..1154 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig142127.2912.1prot_H-elongata_contig142127.2912.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig142127 621..1154 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig142127.2912.1

>prot_H-elongata_contig142127.2912.1 ID=prot_H-elongata_contig142127.2912.1|Name=mRNA_H-elongata_contig142127.2912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
RRRYFVWLAQEIFRVVSHLPTSSRLIAVVPNRYDHQTRLLPYVLSAIADE
AEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRP
FSRRPRIGARLYVRGNTRRFIEVRLSMNTCDTKLKGV*
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mRNA from alignment at H-elongata_contig142127:621..1154-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig142127.2912.1 ID=mRNA_H-elongata_contig142127.2912.1|Name=mRNA_H-elongata_contig142127.2912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig142127:621..1154- (Himanthalia elongata Himel1 dioecious)
CGTAGGAGATATTTCGTTTGGCTGGCGCAGGAGATATTTCGAGTAGTTTC TCATTTACCCACATCCTCAAGACTTATCGCTGTCGTTCCGAACAGATACG ACCACCAGACAAGACTCTTACCCTATGTTCTTAGCGCCATCGCCGATGAA GCGGAGGTCAGTCAGGCGCTTGAACGAAAGCGTAGGAGCCCTTGGAATCA TGTCATACTGTACAACTTAGCGCGGTGACTTCAATCATGAATCTAACGAA GGGCAAATTATTCGCTCTGTTTTCAGGGTGTCTCAGTGATAGCCCTGAAA ACTTTATCGCAATGTGGAGAGGAGTATGAACGTGAGCACCAAAATGACGT AATCGAGCGACGACAATTCGGGGTAGACGGAGACAATCGTGTAAACCACG GCAAACTTTTGCCACGACCATTTTCGAGGAGACCAAGGATCGGAGCTCGT TTGTACGTCCGTGGCAATACAAGACGGTTTATTGAGGTGAGACTTTCCAT GAACACATGCGACACTAAGCTGAAAGGCGTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig142127:621..1154-

>mRNA_H-elongata_contig142127.2912.1 ID=mRNA_H-elongata_contig142127.2912.1|Name=mRNA_H-elongata_contig142127.2912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig142127:621..1154- (Himanthalia elongata Himel1 dioecious)
CGTAGGAGATATTTCGTTTGGCTGGCGCAGGAGATATTTCGAGTAGTTTC
TCATTTACCCACATCCTCAAGACTTATCGCTGTCGTTCCGAACAGATACG
ACCACCAGACAAGACTCTTACCCTATGTTCTTAGCGCCATCGCCGATGAA
GCGGAGCGTAGGAGATATTTCGTTTGGCTGGCGCAGGAGATATTTCGAGT
AGTTTCTCATTTACCCACATCCTCAAGACTTATCGCTGTCGTTCCGAACA
GATACGACCACCAGACAAGACTCTTACCCTATGTTCTTAGCGCCATCGCC
GATGAAGCGGAGGGTGTCTCAGTGATAGCCCTGAAAACTTTATCGCAATG
TGGAGAGGAGTATGAACGTGAGCACCAAAATGACGTAATCGAGCGACGAC
AATTCGGGGTAGACGGAGACAATCGTGTAAACCACGGCAAACTTTTGCCA
CGACCATTTTCGAGGAGACCAAGGATCGGAGCTCGTTTGTACGTCCGTGG
CAATACAAGACGGTTTATTGAGGTGAGACTTTCCATGAACACATGCGACA
CTAAGCTGAAAGGCGTGTAAGGTGTCTCAGTGATAGCCCTGAAAACTTTA
TCGCAATGTGGAGAGGAGTATGAACGTGAGCACCAAAATGACGTAATCGA
GCGACGACAATTCGGGGTAGACGGAGACAATCGTGTAAACCACGGCAAAC
TTTTGCCACGACCATTTTCGAGGAGACCAAGGATCGGAGCTCGTTTGTAC
GTCCGTGGCAATACAAGACGGTTTATTGAGGTGAGACTTTCCATGAACAC
ATGCGACACTAAGCTGAAAGGCGTGTAA
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