mRNA_H-elongata_contig142127.2912.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: D8LFZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ5_ECTSI) HSP 1 Score: 152 bits (384), Expect = 3.950e-40 Identity = 73/93 (78.49%), Postives = 83/93 (89.25%), Query Frame = 1
Query: 85 VPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFI 363
+P+RYDHQTRLLPYVL+AIADEAE VS +A++TLS+CG EYEREHQ+D+IERRQFGVDGD R NH K LP PF RPRIGARLYVRGNTRRF+
Sbjct: 318 LPDRYDHQTRLLPYVLNAIADEAEVVSTVAVETLSKCGAEYEREHQDDIIERRQFGVDGDIRANHTKPLPHPFPGRPRIGARLYVRGNTRRFL 410
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A7S3MD77_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MD77_9STRA) HSP 1 Score: 124 bits (311), Expect = 2.670e-31 Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 1
Query: 73 LIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFIEVRLSMNT---CDTKLKG 408
L+ + +RYDH TRLLPYVL + DE EGV+ AL TL +CG EYE EH++++ +RRQ+GVDGD+R+N K LPRPF RPRIG RLY+RG +RF+ ++ T T+LK
Sbjct: 40 LLTEIGDRYDHHTRLLPYVLDLMTDENEGVANSALATLQKCGREYESEHEDEIKDRRQYGVDGDDRINLSKPLPRPFLERPRIGMRLYIRGTCKRFLNALVNELTNWVSTTRLKS 154
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: K0RP77_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RP77_THAOC) HSP 1 Score: 120 bits (300), Expect = 1.890e-29 Identity = 59/118 (50.00%), Postives = 80/118 (67.80%), Query Frame = 1
Query: 67 SRLIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFIEV---RLSMNTCDTKLKGV 411
SRL+ +P+ YDHQTRLLPYVLS + D+ + AL+ +++CG +YE EH++DVIER QFGVDGD +++ LP PF+ RP +GARL+VR NT RF LS DT+ + V
Sbjct: 96 SRLLVYLPDSYDHQTRLLPYVLSFLCDDVPSIRAAALECIARCGRQYEEEHRDDVIERLQFGVDGDEAIDYDAGLPEPFASRPSLGARLFVRSNTGRFFLAVLGELSSWRADTRRRSV 213
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A6U2L7V1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2L7V1_9STRA) HSP 1 Score: 115 bits (289), Expect = 2.460e-27 Identity = 55/115 (47.83%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 67 SRLIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFIEVRLSMNTCDTKLKGV 411
+ + +P+RYDHQ RLLPY+LS D+ E + + A+ + CG++YE EH +DVIERRQ+G+DGD NH LP PF RP +GARL+VR NT+RF + MN + L V
Sbjct: 511 ANFLVCLPDRYDHQQRLLPYLLSFFNDDVENIRLTAMSAVENCGQQYEVEHTDDVIERRQYGIDGDLGCNHTDPLPMPFQNRPTLGARLFVRANTKRFFQA--LMNELGSWLSAV 623
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A7S1XY42_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY42_9STRA) HSP 1 Score: 115 bits (288), Expect = 3.470e-27 Identity = 54/97 (55.67%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 76 IAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFIE 366
+ +P+RYDH RL PYVL+ AD V+ + L+ + CG EYEREH ++VIERRQFGVDGD R NH + P PF+ RPRIGARL+VRG++ RF++
Sbjct: 450 VTELPDRYDHWPRLTPYVLNLCADVDPEVAQVGLEAIRLCGAEYEREHTDEVIERRQFGVDGDKRCNHARARPEPFADRPRIGARLFVRGHSIRFLK 546
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A836C9Q8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q8_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.230e-26 Identity = 59/117 (50.43%), Postives = 71/117 (60.68%), Query Frame = 1
Query: 85 VPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSR------------------------RPRIGARLYVRGNTRRFI 363
+P+RYDH TRLLPY+L+A+ DEA V+ A+ L CG EYEREH+ +VIERRQ+GVDGD R NH + LP PF R RPRIG RLY R TRRF+
Sbjct: 491 LPDRYDHNTRLLPYLLAALTDEARPVADAAMAALQTCGAEYEREHEQEVIERRQYGVDGDARANHARPLPPPFGRCADDGSSSGXXXXXXXXXXXXXNGRPRIGVRLYARSLTRRFL 607
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A7S4IRD0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IRD0_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.280e-26 Identity = 49/98 (50.00%), Postives = 66/98 (67.35%), Query Frame = 1
Query: 67 SRLIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRF 360
S + +P+RYDH RLLPY+LS D A+ + CG++YE EH +++I+RRQ+GVDGD+ N LP PF RPR+GARL+VRGNT+RF
Sbjct: 49 SYFMVCLPDRYDHHQRLLPYLLSFYQDHMRSTRENAIAAVDYCGKQYEAEHPDEIIDRRQYGVDGDSHCNLDARLPSPFETRPRLGARLFVRGNTKRF 146
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: B8C2S9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C2S9_THAPS) HSP 1 Score: 111 bits (278), Expect = 7.420e-26 Identity = 55/98 (56.12%), Postives = 69/98 (70.41%), Query Frame = 1
Query: 67 SRLIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRF 360
S L+ ++P+RYDHQ RLLPYVLS I D + V AL + +CG +YE EH DVIERRQ GVDG+ +++ LP PF+ RP +GARLYVR NT RF
Sbjct: 479 SSLLVLLPDRYDHQQRLLPYVLSFINDNSVDVQEAALGCIEKCGSQYECEHPGDVIERRQLGVDGEATIDYDIGLPNPFTHRPSLGARLYVRSNTGRF 576
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A7S2PXF7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXF7_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.360e-25 Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 1
Query: 73 LIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRF 360
L+ +P+RYDH+ RLLPYVL I D V+ AL+ + +CG++YER+H +++IERRQFGVDGD+ +++ LP PF+ RP +GARL+VR NT RF
Sbjct: 433 LLINLPDRYDHEQRLLPYVLLFINDNVTEVTNAALECIDKCGDQYERDHSDEIIERRQFGVDGDDTIDYNAGLPTPFTCRPSLGARLFVRNNTSRF 528
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Match: A0A7S1CDH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CDH1_9STRA) HSP 1 Score: 108 bits (270), Expect = 9.030e-25 Identity = 58/126 (46.03%), Postives = 81/126 (64.29%), Query Frame = 1
Query: 40 RVVSHLPTSSRLIAVVPNRYDHQTRLLPYVLSAIADEAEGVSVIALKTLSQCGEEYEREHQNDVIERRQFGVDGDNRVNHGKLLPRPFSRRPRIGARLYVRGNTRRFIEV---RLSMNTCDTKLKG 408
R V HL S +P+R D+Q RLLPY+L+ +ADEA V +AL+ + G ++E+EH +D+IER+Q+ VDGD R++H P PF+ RPRIG RLYVR + RRFI+ L M +TK+
Sbjct: 353 RFVRHLGHWS---LTLPDRIDYQPRLLPYLLNGVADEAPNVHKVALEYMEALGAQFEKEHYDDIIERKQYAVDGDPRIDHESPYPPPFNTRPRIGTRLYVRQHCRRFIKAILKELGMWVHETKINA 475 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig142127.2912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig142127.2912.1 >prot_H-elongata_contig142127.2912.1 ID=prot_H-elongata_contig142127.2912.1|Name=mRNA_H-elongata_contig142127.2912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp RRRYFVWLAQEIFRVVSHLPTSSRLIAVVPNRYDHQTRLLPYVLSAIADEback to top mRNA from alignment at H-elongata_contig142127:621..1154- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig142127.2912.1 ID=mRNA_H-elongata_contig142127.2912.1|Name=mRNA_H-elongata_contig142127.2912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig142127:621..1154- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig142127:621..1154- >mRNA_H-elongata_contig142127.2912.1 ID=mRNA_H-elongata_contig142127.2912.1|Name=mRNA_H-elongata_contig142127.2912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig142127:621..1154- (Himanthalia elongata Himel1 dioecious)back to top |