mRNA_H-elongata_contig14185.2896.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14185.2896.1
Unique NamemRNA_H-elongata_contig14185.2896.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: D7FNF5_ECTSI (Possible ferredoxin (2Fe-2S) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF5_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 8.000e-115
Identity = 163/219 (74.43%), Postives = 188/219 (85.84%), Query Frame = 1
Query:    1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKRAVGAQEPPAEITVTVQQKGKTDITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
            E DPRLYSV+I+RATGI+WG+DISFSWVY+R L P GAAANCG+ISVGDQ       LIAIND  LAGAPFD AMDA+I ++  +VEFT FRG+T++LK+ VGA+ PPAEITVTV+Q GK ++ L A SG NLR+ LT+NG+NVYQSVTRWTNCKGKQLCGTCIV I+EGLE  T+RS+DESSTLRDNP NYRLSCVT+MYDDVTVTVFPPVGAAQWTR
Sbjct:  122 ELDPRLYSVRIARATGIEWGTDISFSWVYIRALQPDGAAANCGEISVGDQ-------LIAINDQTLAGAPFDVAMDAMIALEGTDVEFTFFRGSTEELKKVVGAEAPPAEITVTVKQDGKPELALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVAIDEGLESTTIRSVDESSTLRDNPPNYRLSCVTNMYDDVTVTVFPPVGAAQWTR 333          
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A7S2XYE9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE9_9STRA)

HSP 1 Score: 248 bits (633), Expect = 4.620e-79
Identity = 119/222 (53.60%), Postives = 159/222 (71.62%), Query Frame = 1
Query:    7 DPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKRAVG-----AQEPPAEITVTVQQKGKTDITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
            DPRLY V + R+TGI + SD+SF WVYVRDL P+GAA   G +  GDQV       +AIN+ N  GA F+  +D +  V+ PE+ FT+FRG+TD+LK  V       ++PP    +TVQ+K + D+ L+A  G N+R+L+ +N +NVYQS+TRWTNC GKQLCGTCIV++ EGL   T++S+DE++ LR+NP +YRLSCVTD+Y D TV +FP VGAAQWTR
Sbjct:   95 DPRLYDVTVPRSTGILFASDLSFKWVYVRDLIPNGAAMRTGLVKKGDQV-------VAINEENALGASFNYVIDLISQVKGPEITFTMFRGSTDELKDLVEKNGGVVEKPPTTAKITVQRKDQPDLELEAPIGKNIRDLMIENKINVYQSLTRWTNCNGKQLCGTCIVEVTEGLNNLTLKSVDEATVLRENPPSYRLSCVTDIYGDATVKIFPAVGAAQWTR 309          
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A835Z6S1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S1_9STRA)

HSP 1 Score: 245 bits (625), Expect = 4.410e-78
Identity = 116/221 (52.49%), Postives = 151/221 (68.33%), Query Frame = 1
Query:    1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKRAVGAQE--PPAEITVTVQQKGKTDITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
            E DPRL++  ISRATGIDWG+D+SF WVYVR L P+G+AA  G +S GDQ       L++ N  +  GAPFD  M         +V+   FRGTT +L+   G  +        +TVQQ GK D+ ++ A+G NLR++L  NGVNVYQS+TRWTNCKG+QLCGTCIV +    + CT++S+DE STLR NP +YRLSCVT++Y D+TV +FPP+G  QWTR
Sbjct:   79 EDDPRLHTATISRATGIDWGTDLSFRWVYVRALEPNGSAARTGLVSKGDQ-------LVSFNGESCVGAPFDFVMSLFSKATGTDVDLAFFRGTTAELRALAGGGDGADAERARITVQQPGKADLVIECAAGANLRDVLVGNGVNVYQSLTRWTNCKGRQLCGTCIVDVAGASDACTIKSVDERSTLRSNPPSYRLSCVTNVYKDITVQIFPPIGRDQWTR 292          
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A6S9LXT1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LXT1_HETAK)

HSP 1 Score: 239 bits (609), Expect = 1.130e-75
Identity = 117/220 (53.18%), Postives = 152/220 (69.09%), Query Frame = 1
Query:    1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKRAVGAQEPPAEITVTVQQKGK-TDITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
            E DPRLY++ +SRATGIDWG+D+SF WVYV ++ P GAA    QI  G Q       LIA+N  ++ GA FD AM AL      EV  T FRGT ++L+ A      P+ IT+TV++KG+  +  + A +G NLR++L  N +NVYQS+TRWTNCKGKQLCGTCIV + EG +  + R +DE+STLRDNP  YRLSCVT+M+ D+TV  +P +GA QWTR
Sbjct:   79 EDDPRLYNINLSRATGIDWGTDLSFRWVYVMNIEPGGAADLTDQIKKGHQ-------LIAVNGQSVLGASFDLAMGALAAADGREVGLTFFRGTREELQEATVGSTGPSTITLTVREKGEGPEKIITAPAGANLRDVLIANNINVYQSITRWTNCKGKQLCGTCIVNVAEGFDNTSRRGIDEASTLRDNPPTYRLSCVTNMHGDLTVETYPEIGAYQWTR 291          
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: B8C497_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C497_THAPS)

HSP 1 Score: 235 bits (599), Expect = 8.450e-74
Identity = 124/235 (52.77%), Postives = 161/235 (68.51%), Query Frame = 1
Query:    1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAIND-------VNLAGAPFDAAMDALIGVQDP--EVEFTLFRGTTDDLKRAVGA---QEPPAEITVTV-QQKGKTDI---TLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
            + DPRL  +++ RATGI+WG+D+SFS+VYVRDL PSGAA+  G++ +GDQ+ +    L A++D       +NL GAPFD  M+A   ++    +V+   FRGT D+LK A       E   +IT+TV Q KG  D    T++A +G NLR +LTDNG+NVYQS TRWTNCKGKQLCGTCIV I  G      +SLDE+STLR+NP +YRLSCVT  Y D+TV  FPP+ A+QWTR
Sbjct:   88 DSDPRLRRLRLPRATGIEWGTDLSFSFVYVRDLEPSGAASLSGEVEIGDQICE----LRAVSDSTGVGEVINLIGAPFDKVMEAFASLKKDVRDVDLVFFRGTKDELKAACAGGSFSEENEKITITVIQNKGSNDEELRTIEAKAGCNLRQVLTDNGINVYQSFTRWTNCKGKQLCGTCIVNIANGSGDTNRKSLDEASTLRENPESYRLSCVTFAYGDITVETFPPIEASQWTR 318          
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: K0RAN8_THAOC (2Fe-2S ferredoxin-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAN8_THAOC)

HSP 1 Score: 232 bits (591), Expect = 2.830e-73
Identity = 123/225 (54.67%), Postives = 153/225 (68.00%), Query Frame = 1
Query:    7 DPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDP--EVEFTLFRGTTDDLKRAVGAQE--PPAEITVTV-QQKGKTDIT---LKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
            D RL  V+ISRATGI+WG+D+SFS+VYVRD++P+G+A+  G+I VGDQ+ +           NL GAPFD  M+A  G+      ++   FRGT D+LK A        P  IT+TV Q KG  D T   ++A +G N+R  L DNG+NVYQSVTRWTNCKGKQLCGTCIV + EG      +S+DESSTLR+NP +YRLSCVT  Y DVTV  FPP+ AAQWTR
Sbjct:   43 DTRLRRVRISRATGIEWGTDLSFSFVYVRDMDPAGSASISGEIEVGDQLCELRPVAEGGEATNLIGAPFDQVMNAFAGLDRKVTTLDLVFFRGTKDELKDACSGDSNAEPEIITITVVQNKGAKDETTRYIQAMAGANVRQTLVDNGINVYQSVTRWTNCKGKQLCGTCIVNVKEGGADTNRKSIDESSTLRENPESYRLSCVTFAYGDVTVETFPPIKAAQWTR 267          
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A1Z5KR35_FISSO (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR35_FISSO)

HSP 1 Score: 231 bits (589), Expect = 1.590e-72
Identity = 121/227 (53.30%), Postives = 155/227 (68.28%), Query Frame = 1
Query:    7 DPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDP--EVEFTLFRGTTDDLKRAVG----AQEPPAEITVTV-QQKGKTD---ITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
            DPRLY V++SRA GIDWG+D+SFS+VYVRD++P+G AA  G++  GDQ+ + +   +    + L GAPFD  M+  + +     E++F  FRGT  +LK         Q    +ITVTV Q KG  +   +TL A  G N+R LL DNG+NVYQSVTRWTNCKGKQLCGTCIV I +G      +S+DE+STLR+NP +YRLSCVT  YDD+TV  FPP+ AAQWTR
Sbjct:   76 DPRLYKVRLSRAPGIDWGTDLSFSFVYVRDMDPAGDAAFSGEVQKGDQLCELTP--VGGVPIPLIGAPFDLVMNTFVELDKSVREIDFVFFRGTKQELKAICANGNSIQGESEQITVTVIQNKGSQEEAVVTLTAKPGVNVRELLVDNGINVYQSVTRWTNCKGKQLCGTCIVNITKGSLGTNRKSMDEASTLRENPDSYRLSCVTFAYDDITVETFPPIKAAQWTR 300          
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A7S3TKK5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TKK5_9SPIT)

HSP 1 Score: 224 bits (571), Expect = 1.370e-70
Identity = 109/217 (50.23%), Postives = 144/217 (66.36%), Query Frame = 1
Query:    7 DPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKRAVGAQEPPAEITVTVQQKGKTDITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
            DPRL SV + + TGID+G D+S  W YV  L P GAA    ++ VGDQ       L+AI   ++ G P  +AM+ +   +  EVE   FRG+ + L+     ++ PA IT+T+Q+K + D   +   G NLR+ L   G+NVYQSVTRWTNC GKQLCGTCIV + EG+E CT RSLDE+STLR+NP  Y+L+C+T++Y DVTV + P VGAAQWTR
Sbjct:   33 DPRLLSVSLDKVTGIDFGCDLSLCWPYVLSLTPGGAAERQAEVKVGDQ-------LLAIEGESVIGQPVASAMERIAAAEGKEVEMLFFRGSREALQALCAVEQGPATITLTLQRKDQPDEKFQLPYGCNLRDELISRGINVYQSVTRWTNCNGKQLCGTCIVDVVEGIEGCTRRSLDEASTLRENPETYKLACITNLYGDVTVKLMPKVGAAQWTR 242          
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A7S3L3K5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L3K5_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.440e-70
Identity = 120/228 (52.63%), Postives = 153/228 (67.11%), Query Frame = 1
Query:    1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDP--EVEFTLFRGTTDDLKRAVGAQEPPAE---ITVTV-QQKG--KTDI-TLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
            + D RLY ++ISRATGI+WG+D+SFS+V VR ++P+GAAA  G I+VGDQ+ +          VNL GAPFD  M+A   +     +V+   FRGT D+LK A   +   +E   ITVTV + KG  K  + TLKA +G N+R L  DNG+NVYQSVTRWTNCKGKQLCGTCIV + +G      +S+DE STLR+NP  YRLSCV   Y D T+  FPP+ A+QWTR
Sbjct:   84 DSDERLYRIRISRATGIEWGTDLSFSFVNVRGMDPTGAAAMSGAINVGDQLCELKASKEDSTPVNLVGAPFDFVMEAFADLDKTVSDVDLVFFRGTKDELKAAAKGEATSSEPEIITVTVIENKGSRKEKVHTLKAPAGVNIRELCVDNGINVYQSVTRWTNCKGKQLCGTCIVNVTDGGINTNRKSMDEGSTLRENPETYRLSCVAFAYGDCTIETFPPIEASQWTR 311          
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A7S2YBW4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YBW4_9STRA)

HSP 1 Score: 224 bits (570), Expect = 5.490e-70
Identity = 119/231 (51.52%), Postives = 149/231 (64.50%), Query Frame = 1
Query:    1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRS--TRLIAINDVNLAGAPFDAAMD--ALIGVQDPEVEFTLFRGTTDDLKRAVGAQEPPA----EITVTVQQKGKTDIT----LKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
            E DPRLY V++SRA GI+WG+D+SFS+VYVRD++PSG A+   Q+  GDQ+ +    T       +NL GAPFD  M+  AL+     E++   FRGT D+LK A   ++ P      +TVTV +   T       L A  G N+R L  DNG+NVYQSVTRWTNCKGKQLCGTCIV +  G      +S+DE+STLR+NP  YRLSCVT  Y D TV  FPP+ AAQWTR
Sbjct:   45 ESDPRLYRVRLSRAPGIEWGTDLSFSFVYVRDMDPSGDASMSRQVEKGDQLCEVKPVTEANDATPINLVGAPFDFVMEKFALLDKTVKEMDLVFFRGTKDELKAAASGKDTPEGESETVTVTVYENKGTPQEIIHRLTAPVGVNIRQLCVDNGINVYQSVTRWTNCKGKQLCGTCIVNVAGGGVNTNRKSMDEASTLRENPETYRLSCVTFAYGDCTVETFPPINAAQWTR 275          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNF5_ECTSI8.000e-11574.43Possible ferredoxin (2Fe-2S) n=2 Tax=Ectocarpus Ta... [more]
A0A7S2XYE9_9STRA4.620e-7953.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z6S1_9STRA4.410e-7852.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9LXT1_HETAK1.130e-7553.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B8C497_THAPS8.450e-7452.77Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0RAN8_THAOC2.830e-7354.672Fe-2S ferredoxin-type domain-containing protein (... [more]
A0A1Z5KR35_FISSO1.590e-7253.302Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S3TKK5_9SPIT1.370e-7050.23Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7S3L3K5_9STRA1.440e-7052.63Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2YBW4_9STRA5.490e-7051.52Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14185contigH-elongata_contig14185:1670..3301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.7
Seed ortholog evalue1e-90
Seed eggNOG ortholog2880.D7FNF5
EggNOG free text desc.2Fe-2S iron-sulfur cluster binding domain
EggNOG OGs2S5MT@2759,COG0633@1
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size660
Cds size660
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14185.2896.1prot_H-elongata_contig14185.2896.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14185 1670..3301 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929842.7538779-CDS-H-elongata_contig14185:1669..18471622929842.7538779-CDS-H-elongata_contig14185:1669..1847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14185 1670..1847 -
1691679179.7422357-CDS-H-elongata_contig14185:1669..18471691679179.7422357-CDS-H-elongata_contig14185:1669..1847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14185 1670..1847 -
1622929842.7677393-CDS-H-elongata_contig14185:2132..23071622929842.7677393-CDS-H-elongata_contig14185:2132..2307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14185 2133..2307 -
1691679179.7550166-CDS-H-elongata_contig14185:2132..23071691679179.7550166-CDS-H-elongata_contig14185:2132..2307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14185 2133..2307 -
1622929842.7787764-CDS-H-elongata_contig14185:2613..27491622929842.7787764-CDS-H-elongata_contig14185:2613..2749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14185 2614..2749 -
1691679179.762688-CDS-H-elongata_contig14185:2613..27491691679179.762688-CDS-H-elongata_contig14185:2613..2749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14185 2614..2749 -
1622929842.7889087-CDS-H-elongata_contig14185:3130..33011622929842.7889087-CDS-H-elongata_contig14185:3130..3301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14185 3131..3301 -
1691679179.7709062-CDS-H-elongata_contig14185:3130..33011691679179.7709062-CDS-H-elongata_contig14185:3130..3301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14185 3131..3301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14185.2896.1

>prot_H-elongata_contig14185.2896.1 ID=prot_H-elongata_contig14185.2896.1|Name=mRNA_H-elongata_contig14185.2896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=220bp
EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQ
VPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKR
AVGAQEPPAEITVTVQQKGKTDITLKAASGTNLRNLLTDNGVNVYQSVTR
WTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDM
YDDVTVTVFPPVGAAQWTR*
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mRNA from alignment at H-elongata_contig14185:1670..3301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14185.2896.1 ID=mRNA_H-elongata_contig14185.2896.1|Name=mRNA_H-elongata_contig14185.2896.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1632bp|location=Sequence derived from alignment at H-elongata_contig14185:1670..3301- (Himanthalia elongata Himel1 dioecious)
GAGCAAGACCCTCGACTCTACTCGGTCCAGATATCGCGCGCGACAGGGAT CGATTGGGGTTCAGACATCAGCTTCTCCTGGGTGTACGTCCGAGACCTAA ATCCTTCGGGAGCTGCTGCAAACTGTGGACAGATTTCTGTGGGAGATCAG GTACCCGACAGGAGCACGCGTGTCCCGCCTTCGCACCGTAAAGCTGGAAG GCCCCAACACCCCAGTAGTAATATACTTGATACATCATGCATCAAGCAGA GTGCGCTCTTGGGTGAACATTAAAAAAAACAAGCCCTTGGACGCATGTTG AAAAAAAATATAGAGATATCGGGAATTGCAGTGTACCCTCTGACCCTCCG ACAATTGCAGTGTGGCAGTACCGGTCAATCGATGAGGCGCTGTATTTTCC TGGTTGTGTCTATTGATTGTGCTTCGAGGCTGCTTGGAATTAGTGACGTT AGTAACGCGCCAGTCGAACACAAGACATCCGTGCACCCCTATCCGCTGGC CTGACGTTGCAAATGCCGGCGTGTTTGTTCACCGAAAACTACTCCGGTCA AGTTGATCGCGATCAATGACGTCAACCTGGCCGGCGCGCCGTTCGATGCC GCCATGGACGCCTTAATCGGCGTTCAGGACCCGGAAGTGGAGTTCACTCT TTTCCGAGGGACCACGGACGACCTCAAGCGCGCCGTCGGTAAGTACTAGC AAATATGTTTTTGTTTTTGCCCTGCCCCAACAAAGAAGAACGGAACCTAA TCGGCCACATGTTCTTACTTTTCTCTGTTCTTCGTGCTACTTTTCGCTTG CGTTCATAGTCTCGGTAGCGCCGCACATGGGATTCATAGTGCTCTCGAAG GCGTTCAACCTAGCGGTTACACGCGTGGAACCGTCACGCATTTTGAGCAC GCGTTCTTCGTCACCGCGCGCAGCGAGATTCTTCCGTGTGTGCATACGTG TATCGGGACCGCCTTCAGCTCAAAGTGAAATTTTCCCTCTGCAGGGGCCC AGGAGCCCCCGGCAGAGATCACGGTGACCGTGCAACAGAAGGGAAAGACG GACATCACGTTAAAGGCGGCCTCGGGGACGAACCTTCGAAACCTTTTGAC GGACAACGGCGTCAACGTGTACCAGTCGGTCACTCGCTGGACGAACTGCA AAGGGAAACAGTTATGCGGGTGCGTTTGTCGCGGCGATGGTTCCCGAGCT GGTGGATTAAGTCTCGCACGAGGCGGACGGTCATGCTTCTTTCTGGCTTG TTTACCGTCGTAGATCGCCTTGCATTTGTTGTTCGAGATCCCTGGTGAGG TCGACCGTCATAGCTACCGACGCCACTACCCCGCTTACCAAAGGCTTGGG TTCGCGCCGTTGCCTCTCAAACCTTTATCAGCTTCCCTGTCTCATTTTAG TCCCGCTTTATCTCGCTTGTGCCTGTCCGCGTCCCGATGGATACCCCCCT CAAGGACGTGTATTGTGCAGATCAACGAGGGGCTGGAAAAATGCACCGTG CGGTCATTGGACGAGAGCTCTACGTTACGCGATAACCCAGCCAATTACAG GCTATCGTGCGTGACGGACATGTACGACGATGTCACGGTGACGGTGTTCC CACCCGTGGGCGCAGCACAGTGGACACGATGA
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Coding sequence (CDS) from alignment at H-elongata_contig14185:1670..3301-

>mRNA_H-elongata_contig14185.2896.1 ID=mRNA_H-elongata_contig14185.2896.1|Name=mRNA_H-elongata_contig14185.2896.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1320bp|location=Sequence derived from alignment at H-elongata_contig14185:1670..3301- (Himanthalia elongata Himel1 dioecious)
GAGCAAGACCCTCGACTCTACTCGGTCCAGATATCGCGCGCGACAGGGAT
CGATTGGGGTTCAGACATCAGCTTCTCCTGGGTGTACGTCCGAGACCTAA
ATCCTTCGGGAGCTGCTGCAAACTGTGGACAGATTTCTGTGGGAGATCAG
GTACCCGACAGGAGCACGCGTGAGCAAGACCCTCGACTCTACTCGGTCCA
GATATCGCGCGCGACAGGGATCGATTGGGGTTCAGACATCAGCTTCTCCT
GGGTGTACGTCCGAGACCTAAATCCTTCGGGAGCTGCTGCAAACTGTGGA
CAGATTTCTGTGGGAGATCAGGTACCCGACAGGAGCACGCGTTTGATCGC
GATCAATGACGTCAACCTGGCCGGCGCGCCGTTCGATGCCGCCATGGACG
CCTTAATCGGCGTTCAGGACCCGGAAGTGGAGTTCACTCTTTTCCGAGGG
ACCACGGACGACCTCAAGCGCGCCGTCGTTGATCGCGATCAATGACGTCA
ACCTGGCCGGCGCGCCGTTCGATGCCGCCATGGACGCCTTAATCGGCGTT
CAGGACCCGGAAGTGGAGTTCACTCTTTTCCGAGGGACCACGGACGACCT
CAAGCGCGCCGTCGGGGCCCAGGAGCCCCCGGCAGAGATCACGGTGACCG
TGCAACAGAAGGGAAAGACGGACATCACGTTAAAGGCGGCCTCGGGGACG
AACCTTCGAAACCTTTTGACGGACAACGGCGTCAACGTGTACCAGTCGGT
CACTCGCTGGACGAACTGCAAAGGGAAACAGTTATGCGGGGGCCCAGGAG
CCCCCGGCAGAGATCACGGTGACCGTGCAACAGAAGGGAAAGACGGACAT
CACGTTAAAGGCGGCCTCGGGGACGAACCTTCGAAACCTTTTGACGGACA
ACGGCGTCAACGTGTACCAGTCGGTCACTCGCTGGACGAACTGCAAAGGG
AAACAGTTATGCGGGACGTGTATTGTGCAGATCAACGAGGGGCTGGAAAA
ATGCACCGTGCGGTCATTGGACGAGAGCTCTACGTTACGCGATAACCCAG
CCAATTACAGGCTATCGTGCGTGACGGACATGTACGACGATGTCACGGTG
ACGGTGTTCCCACCCGTGGGCGCAGCACAGTGGACACGATGAGACGTGTA
TTGTGCAGATCAACGAGGGGCTGGAAAAATGCACCGTGCGGTCATTGGAC
GAGAGCTCTACGTTACGCGATAACCCAGCCAATTACAGGCTATCGTGCGT
GACGGACATGTACGACGATGTCACGGTGACGGTGTTCCCACCCGTGGGCG
CAGCACAGTGGACACGATGA
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