mRNA_H-elongata_contig14185.2896.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: D7FNF5_ECTSI (Possible ferredoxin (2Fe-2S) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNF5_ECTSI) HSP 1 Score: 340 bits (871), Expect = 8.000e-115 Identity = 163/219 (74.43%), Postives = 188/219 (85.84%), Query Frame = 1
Query: 1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKRAVGAQEPPAEITVTVQQKGKTDITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
E DPRLYSV+I+RATGI+WG+DISFSWVY+R L P GAAANCG+ISVGDQ LIAIND LAGAPFD AMDA+I ++ +VEFT FRG+T++LK+ VGA+ PPAEITVTV+Q GK ++ L A SG NLR+ LT+NG+NVYQSVTRWTNCKGKQLCGTCIV I+EGLE T+RS+DESSTLRDNP NYRLSCVT+MYDDVTVTVFPPVGAAQWTR
Sbjct: 122 ELDPRLYSVRIARATGIEWGTDISFSWVYIRALQPDGAAANCGEISVGDQ-------LIAINDQTLAGAPFDVAMDAMIALEGTDVEFTFFRGSTEELKKVVGAEAPPAEITVTVKQDGKPELALTAPSGANLRDFLTENGINVYQSVTRWTNCKGKQLCGTCIVAIDEGLESTTIRSVDESSTLRDNPPNYRLSCVTNMYDDVTVTVFPPVGAAQWTR 333
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A7S2XYE9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYE9_9STRA) HSP 1 Score: 248 bits (633), Expect = 4.620e-79 Identity = 119/222 (53.60%), Postives = 159/222 (71.62%), Query Frame = 1
Query: 7 DPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKRAVG-----AQEPPAEITVTVQQKGKTDITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
DPRLY V + R+TGI + SD+SF WVYVRDL P+GAA G + GDQV +AIN+ N GA F+ +D + V+ PE+ FT+FRG+TD+LK V ++PP +TVQ+K + D+ L+A G N+R+L+ +N +NVYQS+TRWTNC GKQLCGTCIV++ EGL T++S+DE++ LR+NP +YRLSCVTD+Y D TV +FP VGAAQWTR
Sbjct: 95 DPRLYDVTVPRSTGILFASDLSFKWVYVRDLIPNGAAMRTGLVKKGDQV-------VAINEENALGASFNYVIDLISQVKGPEITFTMFRGSTDELKDLVEKNGGVVEKPPTTAKITVQRKDQPDLELEAPIGKNIRDLMIENKINVYQSLTRWTNCNGKQLCGTCIVEVTEGLNNLTLKSVDEATVLRENPPSYRLSCVTDIYGDATVKIFPAVGAAQWTR 309
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A835Z6S1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6S1_9STRA) HSP 1 Score: 245 bits (625), Expect = 4.410e-78 Identity = 116/221 (52.49%), Postives = 151/221 (68.33%), Query Frame = 1
Query: 1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKRAVGAQE--PPAEITVTVQQKGKTDITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
E DPRL++ ISRATGIDWG+D+SF WVYVR L P+G+AA G +S GDQ L++ N + GAPFD M +V+ FRGTT +L+ G + +TVQQ GK D+ ++ A+G NLR++L NGVNVYQS+TRWTNCKG+QLCGTCIV + + CT++S+DE STLR NP +YRLSCVT++Y D+TV +FPP+G QWTR
Sbjct: 79 EDDPRLHTATISRATGIDWGTDLSFRWVYVRALEPNGSAARTGLVSKGDQ-------LVSFNGESCVGAPFDFVMSLFSKATGTDVDLAFFRGTTAELRALAGGGDGADAERARITVQQPGKADLVIECAAGANLRDVLVGNGVNVYQSLTRWTNCKGRQLCGTCIVDVAGASDACTIKSVDERSTLRSNPPSYRLSCVTNVYKDITVQIFPPIGRDQWTR 292
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A6S9LXT1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9LXT1_HETAK) HSP 1 Score: 239 bits (609), Expect = 1.130e-75 Identity = 117/220 (53.18%), Postives = 152/220 (69.09%), Query Frame = 1
Query: 1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKRAVGAQEPPAEITVTVQQKGK-TDITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
E DPRLY++ +SRATGIDWG+D+SF WVYV ++ P GAA QI G Q LIA+N ++ GA FD AM AL EV T FRGT ++L+ A P+ IT+TV++KG+ + + A +G NLR++L N +NVYQS+TRWTNCKGKQLCGTCIV + EG + + R +DE+STLRDNP YRLSCVT+M+ D+TV +P +GA QWTR
Sbjct: 79 EDDPRLYNINLSRATGIDWGTDLSFRWVYVMNIEPGGAADLTDQIKKGHQ-------LIAVNGQSVLGASFDLAMGALAAADGREVGLTFFRGTREELQEATVGSTGPSTITLTVREKGEGPEKIITAPAGANLRDVLIANNINVYQSITRWTNCKGKQLCGTCIVNVAEGFDNTSRRGIDEASTLRDNPPTYRLSCVTNMHGDLTVETYPEIGAYQWTR 291
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: B8C497_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C497_THAPS) HSP 1 Score: 235 bits (599), Expect = 8.450e-74 Identity = 124/235 (52.77%), Postives = 161/235 (68.51%), Query Frame = 1
Query: 1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAIND-------VNLAGAPFDAAMDALIGVQDP--EVEFTLFRGTTDDLKRAVGA---QEPPAEITVTV-QQKGKTDI---TLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
+ DPRL +++ RATGI+WG+D+SFS+VYVRDL PSGAA+ G++ +GDQ+ + L A++D +NL GAPFD M+A ++ +V+ FRGT D+LK A E +IT+TV Q KG D T++A +G NLR +LTDNG+NVYQS TRWTNCKGKQLCGTCIV I G +SLDE+STLR+NP +YRLSCVT Y D+TV FPP+ A+QWTR
Sbjct: 88 DSDPRLRRLRLPRATGIEWGTDLSFSFVYVRDLEPSGAASLSGEVEIGDQICE----LRAVSDSTGVGEVINLIGAPFDKVMEAFASLKKDVRDVDLVFFRGTKDELKAACAGGSFSEENEKITITVIQNKGSNDEELRTIEAKAGCNLRQVLTDNGINVYQSFTRWTNCKGKQLCGTCIVNIANGSGDTNRKSLDEASTLRENPESYRLSCVTFAYGDITVETFPPIEASQWTR 318
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: K0RAN8_THAOC (2Fe-2S ferredoxin-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RAN8_THAOC) HSP 1 Score: 232 bits (591), Expect = 2.830e-73 Identity = 123/225 (54.67%), Postives = 153/225 (68.00%), Query Frame = 1
Query: 7 DPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDP--EVEFTLFRGTTDDLKRAVGAQE--PPAEITVTV-QQKGKTDIT---LKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
D RL V+ISRATGI+WG+D+SFS+VYVRD++P+G+A+ G+I VGDQ+ + NL GAPFD M+A G+ ++ FRGT D+LK A P IT+TV Q KG D T ++A +G N+R L DNG+NVYQSVTRWTNCKGKQLCGTCIV + EG +S+DESSTLR+NP +YRLSCVT Y DVTV FPP+ AAQWTR
Sbjct: 43 DTRLRRVRISRATGIEWGTDLSFSFVYVRDMDPAGSASISGEIEVGDQLCELRPVAEGGEATNLIGAPFDQVMNAFAGLDRKVTTLDLVFFRGTKDELKDACSGDSNAEPEIITITVVQNKGAKDETTRYIQAMAGANVRQTLVDNGINVYQSVTRWTNCKGKQLCGTCIVNVKEGGADTNRKSIDESSTLRENPESYRLSCVTFAYGDVTVETFPPIKAAQWTR 267
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A1Z5KR35_FISSO (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KR35_FISSO) HSP 1 Score: 231 bits (589), Expect = 1.590e-72 Identity = 121/227 (53.30%), Postives = 155/227 (68.28%), Query Frame = 1
Query: 7 DPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDP--EVEFTLFRGTTDDLKRAVG----AQEPPAEITVTV-QQKGKTD---ITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
DPRLY V++SRA GIDWG+D+SFS+VYVRD++P+G AA G++ GDQ+ + + + + L GAPFD M+ + + E++F FRGT +LK Q +ITVTV Q KG + +TL A G N+R LL DNG+NVYQSVTRWTNCKGKQLCGTCIV I +G +S+DE+STLR+NP +YRLSCVT YDD+TV FPP+ AAQWTR
Sbjct: 76 DPRLYKVRLSRAPGIDWGTDLSFSFVYVRDMDPAGDAAFSGEVQKGDQLCELTP--VGGVPIPLIGAPFDLVMNTFVELDKSVREIDFVFFRGTKQELKAICANGNSIQGESEQITVTVIQNKGSQEEAVVTLTAKPGVNVRELLVDNGINVYQSVTRWTNCKGKQLCGTCIVNITKGSLGTNRKSMDEASTLRENPDSYRLSCVTFAYDDITVETFPPIKAAQWTR 300
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A7S3TKK5_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TKK5_9SPIT) HSP 1 Score: 224 bits (571), Expect = 1.370e-70 Identity = 109/217 (50.23%), Postives = 144/217 (66.36%), Query Frame = 1
Query: 7 DPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDPEVEFTLFRGTTDDLKRAVGAQEPPAEITVTVQQKGKTDITLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
DPRL SV + + TGID+G D+S W YV L P GAA ++ VGDQ L+AI ++ G P +AM+ + + EVE FRG+ + L+ ++ PA IT+T+Q+K + D + G NLR+ L G+NVYQSVTRWTNC GKQLCGTCIV + EG+E CT RSLDE+STLR+NP Y+L+C+T++Y DVTV + P VGAAQWTR
Sbjct: 33 DPRLLSVSLDKVTGIDFGCDLSLCWPYVLSLTPGGAAERQAEVKVGDQ-------LLAIEGESVIGQPVASAMERIAAAEGKEVEMLFFRGSREALQALCAVEQGPATITLTLQRKDQPDEKFQLPYGCNLRDELISRGINVYQSVTRWTNCNGKQLCGTCIVDVVEGIEGCTRRSLDEASTLRENPETYKLACITNLYGDVTVKLMPKVGAAQWTR 242
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A7S3L3K5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L3K5_9STRA) HSP 1 Score: 226 bits (577), Expect = 1.440e-70 Identity = 120/228 (52.63%), Postives = 153/228 (67.11%), Query Frame = 1
Query: 1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRSTRLIAINDVNLAGAPFDAAMDALIGVQDP--EVEFTLFRGTTDDLKRAVGAQEPPAE---ITVTV-QQKG--KTDI-TLKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
+ D RLY ++ISRATGI+WG+D+SFS+V VR ++P+GAAA G I+VGDQ+ + VNL GAPFD M+A + +V+ FRGT D+LK A + +E ITVTV + KG K + TLKA +G N+R L DNG+NVYQSVTRWTNCKGKQLCGTCIV + +G +S+DE STLR+NP YRLSCV Y D T+ FPP+ A+QWTR
Sbjct: 84 DSDERLYRIRISRATGIEWGTDLSFSFVNVRGMDPTGAAAMSGAINVGDQLCELKASKEDSTPVNLVGAPFDFVMEAFADLDKTVSDVDLVFFRGTKDELKAAAKGEATSSEPEIITVTVIENKGSRKEKVHTLKAPAGVNIRELCVDNGINVYQSVTRWTNCKGKQLCGTCIVNVTDGGINTNRKSMDEGSTLRENPETYRLSCVAFAYGDCTIETFPPIEASQWTR 311
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Match: A0A7S2YBW4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YBW4_9STRA) HSP 1 Score: 224 bits (570), Expect = 5.490e-70 Identity = 119/231 (51.52%), Postives = 149/231 (64.50%), Query Frame = 1
Query: 1 EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQVPDRS--TRLIAINDVNLAGAPFDAAMD--ALIGVQDPEVEFTLFRGTTDDLKRAVGAQEPPA----EITVTVQQKGKTDIT----LKAASGTNLRNLLTDNGVNVYQSVTRWTNCKGKQLCGTCIVQINEGLEKCTVRSLDESSTLRDNPANYRLSCVTDMYDDVTVTVFPPVGAAQWTR 657
E DPRLY V++SRA GI+WG+D+SFS+VYVRD++PSG A+ Q+ GDQ+ + T +NL GAPFD M+ AL+ E++ FRGT D+LK A ++ P +TVTV + T L A G N+R L DNG+NVYQSVTRWTNCKGKQLCGTCIV + G +S+DE+STLR+NP YRLSCVT Y D TV FPP+ AAQWTR
Sbjct: 45 ESDPRLYRVRLSRAPGIEWGTDLSFSFVYVRDMDPSGDASMSRQVEKGDQLCEVKPVTEANDATPINLVGAPFDFVMEKFALLDKTVKEMDLVFFRGTKDELKAAASGKDTPEGESETVTVTVYENKGTPQEIIHRLTAPVGVNIRQLCVDNGINVYQSVTRWTNCKGKQLCGTCIVNVAGGGVNTNRKSMDEASTLRENPETYRLSCVTFAYGDCTVETFPPINAAQWTR 275 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14185.2896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig14185.2896.1 >prot_H-elongata_contig14185.2896.1 ID=prot_H-elongata_contig14185.2896.1|Name=mRNA_H-elongata_contig14185.2896.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=220bp EQDPRLYSVQISRATGIDWGSDISFSWVYVRDLNPSGAAANCGQISVGDQback to top mRNA from alignment at H-elongata_contig14185:1670..3301- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig14185.2896.1 ID=mRNA_H-elongata_contig14185.2896.1|Name=mRNA_H-elongata_contig14185.2896.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1632bp|location=Sequence derived from alignment at H-elongata_contig14185:1670..3301- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig14185:1670..3301- >mRNA_H-elongata_contig14185.2896.1 ID=mRNA_H-elongata_contig14185.2896.1|Name=mRNA_H-elongata_contig14185.2896.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1320bp|location=Sequence derived from alignment at H-elongata_contig14185:1670..3301- (Himanthalia elongata Himel1 dioecious)back to top |