mRNA_H-elongata_contig141482.2881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141482.2881.1
Unique NamemRNA_H-elongata_contig141482.2881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: D8LK02_ECTSI (Cir_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK02_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.960e-19
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREEQQVRELEEMQ 168
            MSLAFLFKKTWHPS +QN+E VW AEQKDAAEK++IEELTK+VREEQQVRELEEMQ
Sbjct:    1 MSLAFLFKKTWHPSTLQNSEKVWIAEQKDAAEKKRIEELTKQVREEQQVRELEEMQ 56
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BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A813ABJ8_9DINO (Cwf25 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ABJ8_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 2.690e-9
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREEQQVRELEEMQ 168
            M+LAFL KK WHPS ++N E VWKA QKD  EKR+IEEL ++  EE+Q+ EL+ +Q
Sbjct:    1 MALAFLTKKMWHPSTMENQERVWKARQKDKEEKRKIEELRRQRAEERQMEELQALQ 56
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BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A7S0V5T6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0V5T6_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 6.690e-8
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    7 LAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREE 138
            LAFL KKTWHPS++QN E VWK EQK AAE +++EEL K++ EE
Sbjct:    5 LAFLNKKTWHPSRMQNVEDVWKREQKAAAETQKVEELRKQIEEE 48
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BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A0G4IIB5_PLABS (Cir_N domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IIB5_PLABS)

HSP 1 Score: 50.4 bits (119), Expect = 1.050e-5
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    7 LAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREEQQVRELEEMQV 171
            L+FL KK+WH + I NAE VW AEQKDAAEK ++ +L K + EE    EL ++Q+
Sbjct:    6 LSFLNKKSWHTATIANAEKVWLAEQKDAAEKSKLAQLRKEIEEEXXXEELRKLQL 60
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BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A443PYA4_9MAGN (Pre-mRNA-splicing factor CWC25 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PYA4_9MAGN)

HSP 1 Score: 49.7 bits (117), Expect = 1.970e-5
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 1 
Query:    1 MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREE 138
            M+L FL KK WH   ++N E VWKAEQK+ AE++++EEL K+++EE
Sbjct:    1 MALKFLNKKGWHTGSLRNIENVWKAEQKNDAEQKKLEELRKQIQEE 46
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BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A0K9RWJ3_SPIOL (Cir_N domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RWJ3_SPIOL)

HSP 1 Score: 49.7 bits (117), Expect = 1.970e-5
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREE 138
            M+L FL KK WH   ++N E VWKAEQK+ AE+R++EEL K++ EE
Sbjct:    1 MALKFLNKKGWHTGSLRNIENVWKAEQKNEAEQRKLEELRKQIIEE 46
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BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A7S0LHL6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHL6_9EUKA)

HSP 1 Score: 47.8 bits (112), Expect = 9.420e-5
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    1 MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREEQQVRELEEMQ 168
            MSLAFL KK WH + + N E VW AE+K+  E+R++E   K V E++Q  EL ++Q
Sbjct:    5 MSLAFLNKKGWHTTNLNNVEKVWAAEEKEKEEQRKLEAYRKEVEEDRQKAELRQLQ 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LK02_ECTSI9.960e-1985.71Cir_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A813ABJ8_9DINO2.690e-958.93Cwf25 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S0V5T6_9CHLO6.690e-865.91Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A0G4IIB5_PLABS1.050e-552.73Cir_N domain-containing protein n=1 Tax=Plasmodiop... [more]
A0A443PYA4_9MAGN1.970e-554.35Pre-mRNA-splicing factor CWC25 n=1 Tax=Cinnamomum ... [more]
A0A0K9RWJ3_SPIOL1.970e-556.52Cir_N domain-containing protein n=1 Tax=Spinacia o... [more]
A0A7S0LHL6_9EUKA9.420e-548.21Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141482contigH-elongata_contig141482:1089..1262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue6.2e-16
Seed eggNOG ortholog2880.D8LK02
Preferred nameCWC25
KEGG koko:K07203,ko:K12182
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04072,ko04136,ko04138,ko04139,ko04140,ko04144,ko04145,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map04012,map04066,map04072,map04136,map04138,map04139,map04140,map04144,map04145,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00408
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018992,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040021,GO:0040022,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048856,GO:0051321,GO:0070013,GO:0071704,GO:0090304,GO:1901360,GO:1990904
EggNOG free text desc.RNA splicing
EggNOG OGsKOG3869@1,KOG3869@2759
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionCBF1-interacting co-repressor CIR, N-terminal domain
Ec32 orthologEc-06_007650.1
Exons1
Model size174
Cds size174
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929841.7655802-CDS-H-elongata_contig141482:1088..12621622929841.7655802-CDS-H-elongata_contig141482:1088..1262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141482 1089..1262 +
1691679179.3460536-CDS-H-elongata_contig141482:1088..12621691679179.3460536-CDS-H-elongata_contig141482:1088..1262Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141482 1089..1262 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141482.2881.1prot_H-elongata_contig141482.2881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141482 1089..1262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141482.2881.1

>prot_H-elongata_contig141482.2881.1 ID=prot_H-elongata_contig141482.2881.1|Name=mRNA_H-elongata_contig141482.2881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREEQQVR
ELEEMQVR
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mRNA from alignment at H-elongata_contig141482:1089..1262+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141482.2881.1 ID=mRNA_H-elongata_contig141482.2881.1|Name=mRNA_H-elongata_contig141482.2881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=174bp|location=Sequence derived from alignment at H-elongata_contig141482:1089..1262+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCTCGCTTTCCTGTTCAAGAAAACATGGCATCCATCCAAAATCCA
AAATGCGGAGATGGTGTGGAAGGCGGAGCAGAAGGATGCTGCGGAGAAGC
GGCAGATCGAGGAGCTGACCAAGCGGGTACGTGAGGAGCAGCAAGTGCGA
GAGCTGGAGGAAATGCAGGTTCGT
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Coding sequence (CDS) from alignment at H-elongata_contig141482:1089..1262+

>mRNA_H-elongata_contig141482.2881.1 ID=mRNA_H-elongata_contig141482.2881.1|Name=mRNA_H-elongata_contig141482.2881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at H-elongata_contig141482:1089..1262+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCTCGCTTTCCTGTTCAAGAAAACATGGCATCCATCCAAAATCCA
AAATGCGGAGATGGTGTGGAAGGCGGAGCAGAAGGATGCTGCGGAGAAGC
GGCAGATCGAGGAGCTGACCAAGCGGGTACGTGAGGAGCAGCAAGTGCGA
GAGCTGGAGGAAATGCAGGTTCGTATGTCTCTCGCTTTCCTGTTCAAGAA
AACATGGCATCCATCCAAAATCCAAAATGCGGAGATGGTGTGGAAGGCGG
AGCAGAAGGATGCTGCGGAGAAGCGGCAGATCGAGGAGCTGACCAAGCGG
GTACGTGAGGAGCAGCAAGTGCGAGAGCTGGAGGAAATGCAGGTTCGT
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