prot_H-elongata_contig141482.2881.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig141482.2881.1
Unique Nameprot_H-elongata_contig141482.2881.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length58
Homology
BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: D8LK02_ECTSI (Cir_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK02_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.960e-19
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 0
Query:    1 MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREEQQVRELEEMQ 56
            MSLAFLFKKTWHPS +QN+E VW AEQKDAAEK++IEELTK+VREEQQVRELEEMQ
Sbjct:    1 MSLAFLFKKTWHPSTLQNSEKVWIAEQKDAAEKKRIEELTKQVREEQQVRELEEMQ 56          
BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A813ABJ8_9DINO (Cwf25 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813ABJ8_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 2.690e-9
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 0
Query:    1 MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREEQQVRELEEMQ 56
            M+LAFL KK WHPS ++N E VWKA QKD  EKR+IEEL ++  EE+Q+ EL+ +Q
Sbjct:    1 MALAFLTKKMWHPSTMENQERVWKARQKDKEEKRKIEELRRQRAEERQMEELQALQ 56          
BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A7S0V5T6_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0V5T6_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 6.690e-8
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 0
Query:    3 LAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREE 46
            LAFL KKTWHPS++QN E VWK EQK AAE +++EEL K++ EE
Sbjct:    5 LAFLNKKTWHPSRMQNVEDVWKREQKAAAETQKVEELRKQIEEE 48          
BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A0G4IIB5_PLABS (Cir_N domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IIB5_PLABS)

HSP 1 Score: 50.4 bits (119), Expect = 1.050e-5
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    3 LAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREEQQVRELEEMQV 57
            L+FL KK+WH + I NAE VW AEQKDAAEK ++ +L K + EE    EL ++Q+
Sbjct:    6 LSFLNKKSWHTATIANAEKVWLAEQKDAAEKSKLAQLRKEIEEEXXXEELRKLQL 60          
BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A443PYA4_9MAGN (Pre-mRNA-splicing factor CWC25 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PYA4_9MAGN)

HSP 1 Score: 49.7 bits (117), Expect = 1.970e-5
Identity = 25/46 (54.35%), Postives = 36/46 (78.26%), Query Frame = 0
Query:    1 MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREE 46
            M+L FL KK WH   ++N E VWKAEQK+ AE++++EEL K+++EE
Sbjct:    1 MALKFLNKKGWHTGSLRNIENVWKAEQKNDAEQKKLEELRKQIQEE 46          
BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A0K9RWJ3_SPIOL (Cir_N domain-containing protein n=1 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9RWJ3_SPIOL)

HSP 1 Score: 49.7 bits (117), Expect = 1.970e-5
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0
Query:    1 MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREE 46
            M+L FL KK WH   ++N E VWKAEQK+ AE+R++EEL K++ EE
Sbjct:    1 MALKFLNKKGWHTGSLRNIENVWKAEQKNEAEQRKLEELRKQIIEE 46          
BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Match: A0A7S0LHL6_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHL6_9EUKA)

HSP 1 Score: 47.8 bits (112), Expect = 9.420e-5
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 0
Query:    1 MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREEQQVRELEEMQ 56
            MSLAFL KK WH + + N E VW AE+K+  E+R++E   K V E++Q  EL ++Q
Sbjct:    5 MSLAFLNKKGWHTTNLNNVEKVWAAEEKEKEEQRKLEAYRKEVEEDRQKAELRQLQ 60          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141482.2881.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LK02_ECTSI9.960e-1985.71Cir_N domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A813ABJ8_9DINO2.690e-958.93Cwf25 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A7S0V5T6_9CHLO6.690e-865.91Hypothetical protein (Fragment) n=1 Tax=Polytomell... [more]
A0A0G4IIB5_PLABS1.050e-552.73Cir_N domain-containing protein n=1 Tax=Plasmodiop... [more]
A0A443PYA4_9MAGN1.970e-554.35Pre-mRNA-splicing factor CWC25 n=1 Tax=Cinnamomum ... [more]
A0A0K9RWJ3_SPIOL1.970e-556.52Cir_N domain-containing protein n=1 Tax=Spinacia o... [more]
A0A7S0LHL6_9EUKA9.420e-548.21Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 36..56
NoneNo IPR availablePANTHERPTHR16196CELL CYCLE CONTROL PROTEIN CWF25coord: 1..56
IPR019339CBF1-interacting co-repressor CIR, N-terminal domainSMARTSM01083Cir_N_3coord: 10..46
e-value: 1.6E-7
score: 41.0
IPR019339CBF1-interacting co-repressor CIR, N-terminal domainPFAMPF10197Cir_Ncoord: 11..46
e-value: 1.6E-12
score: 47.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141482contigH-elongata_contig141482:1089..1262 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141482.2881.1mRNA_H-elongata_contig141482.2881.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig141482 1089..1262 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig141482.2881.1 ID=prot_H-elongata_contig141482.2881.1|Name=mRNA_H-elongata_contig141482.2881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=58bp
MSLAFLFKKTWHPSKIQNAEMVWKAEQKDAAEKRQIEELTKRVREEQQVR
ELEEMQVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019339CIR_N_dom