mRNA_H-elongata_contig103454.287.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103454.287.1
Unique NamemRNA_H-elongata_contig103454.287.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Match: A0A6H5KWQ0_9PHAE (AMP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.660e-27
Identity = 52/57 (91.23%), Postives = 55/57 (96.49%), Query Frame = 1 
Query:    7 IVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHPTVFFGVPRV 177
            +VSYLPLSHIAAQILD+HGPM+LGC VAFAQPDALKGSLVKTLREI PTVFFGVPRV
Sbjct:  255 VVSYLPLSHIAAQILDMHGPMFLGCTVAFAQPDALKGSLVKTLREIRPTVFFGVPRV 311
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BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Match: F2UAC6_SALR5 (AMP dependent ligase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UAC6_SALR5)

HSP 1 Score: 93.2 bits (230), Expect = 9.740e-21
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 ESIVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHPTVFFGVPRV 177
            E IVSYLPLSHIAAQILD+H PM LG  V FAQP ALKG+LV+TL+E+ PTVF GVPRV
Sbjct:  246 EHIVSYLPLSHIAAQILDMHAPMILGATVWFAQPTALKGTLVQTLQEVRPTVFLGVPRV 304
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BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Match: K3WLR6_GLOUD (AMP-binding domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLR6_GLOUD)

HSP 1 Score: 92.8 bits (229), Expect = 1.330e-20
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 ESIVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHPTVFFGVPRV 177
            E  VS+LPLSH+AAQ+LDIH PM+LG  V+FA PDALKG+LV+TLREI PT FFGVPRV
Sbjct:  242 ERSVSFLPLSHVAAQLLDIHVPMFLGSQVSFAGPDALKGALVETLREIRPTFFFGVPRV 300
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BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Match: A0A1Z5J6E1_FISSO (Long-chain-fatty-acid--CoA ligase ACSBG n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J6E1_FISSO)

HSP 1 Score: 92.8 bits (229), Expect = 1.330e-20
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 ESIVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHPTVFFGVPRV 177
            + +VSYLPLSHIAAQ LD+  P++ GC V FAQPDALKG+LV TLRE+ PTVFFGVPRV
Sbjct:  257 DKLVSYLPLSHIAAQALDMFQPLFSGCKVYFAQPDALKGTLVDTLREVRPTVFFGVPRV 315
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BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Match: A0A5D6Y4R7_9STRA (AMP-binding domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4R7_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.830e-20
Identity = 44/59 (74.58%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 ESIVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHPTVFFGVPRV 177
            E  VS+LPLSH+AAQ+LDIH PM+LG  V+FA PDALKG+LV+TLREI PT FFGVPRV
Sbjct:  967 ERSVSFLPLSHVAAQLLDIHVPMHLGSQVSFAGPDALKGALVETLREIRPTFFFGVPRV 1025
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BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Match: A0A1X7TUX5_AMPQE (AMP-binding domain-containing protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TUX5_AMPQE)

HSP 1 Score: 91.7 bits (226), Expect = 3.400e-20
Identity = 40/59 (67.80%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 ESIVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHPTVFFGVPRV 177
            E ++SYLPLSH+A Q+LDI+ P+ +G  V FAQPDALKGSL++TLRE+HPT+F GVPRV
Sbjct:  362 ERVISYLPLSHVATQLLDIYFPLAIGASVWFAQPDALKGSLLQTLREVHPTIFLGVPRV 420
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BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Match: A0A7S2VCD9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VCD9_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.520e-20
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 ESIVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHPTVFFGVPRV 177
            ++++SYLPLSHIAAQ+LD+H P+  GC + FAQPDALKGS+  TL+E+ PT+FFGVPRV
Sbjct:   28 DAMISYLPLSHIAAQMLDLHTPLESGCQIYFAQPDALKGSIGTTLKEVRPTIFFGVPRV 86
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BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Match: A0A7S2Y6D0_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y6D0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 6.330e-20
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 1 
Query:    1 ESIVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHPTVFFGVPRV 177
            ++++SYLPLSHIAAQ+LD+H P+  GC + FAQPDALKGS+  TL+E+ PT+FFGVPRV
Sbjct:  255 DAMISYLPLSHIAAQMLDLHTPLESGCQIYFAQPDALKGSIGTTLKEVRPTIFFGVPRV 313
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BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Match: A0A1S3HL33_LINUN (long-chain-fatty-acid--CoA ligase ACSBG2 isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HL33_LINUN)

HSP 1 Score: 90.9 bits (224), Expect = 6.350e-20
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 ESIVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHPTVFFGVPRV 177
            E +VSYLPLSH+AAQI+DI+GP+  G  V FA+PDALKG+L  TL E+HPTVFFGVPRV
Sbjct:  424 EVLVSYLPLSHVAAQIVDIYGPLIAGAAVYFARPDALKGTLRITLNEVHPTVFFGVPRV 482
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BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Match: A0A8K1FDL6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDL6_PYTOL)

HSP 1 Score: 90.5 bits (223), Expect = 8.630e-20
Identity = 42/59 (71.19%), Postives = 49/59 (83.05%), Query Frame = 1 
Query:    1 ESIVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHPTVFFGVPRV 177
            E  VS+LPLSH+AAQ+LDIH PM+LGC + FA PDALKG+LV  L+EI PT FFGVPRV
Sbjct:  243 EKSVSFLPLSHVAAQLLDIHVPMHLGCEIYFAGPDALKGALVDILKEIRPTFFFGVPRV 301
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103454.287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWQ0_9PHAE5.660e-2791.23AMP-binding domain-containing protein n=1 Tax=Ecto... [more]
F2UAC6_SALR59.740e-2176.27AMP dependent ligase n=1 Tax=Salpingoeca rosetta (... [more]
K3WLR6_GLOUD1.330e-2074.58AMP-binding domain-containing protein n=1 Tax=Glob... [more]
A0A1Z5J6E1_FISSO1.330e-2072.88Long-chain-fatty-acid--CoA ligase ACSBG n=2 Tax=Fi... [more]
A0A5D6Y4R7_9STRA1.830e-2074.58AMP-binding domain-containing protein n=1 Tax=Pyth... [more]
A0A1X7TUX5_AMPQE3.400e-2067.80AMP-binding domain-containing protein n=2 Tax=Amph... [more]
A0A7S2VCD9_9STRA4.520e-2066.10Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2Y6D0_9STRA6.330e-2066.10Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A1S3HL33_LINUN6.350e-2071.19long-chain-fatty-acid--CoA ligase ACSBG2 isoform X... [more]
A0A8K1FDL6_PYTOL8.630e-2071.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103454contigH-elongata_contig103454:956..1759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score93.6
Seed ortholog evalue3.3e-17
Seed eggNOG ortholog946362.XP_004993982.1
Preferred nameACSBG1
KEGG rclassRC00004,RC00014
KEGG koko:K15013
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko03320,ko04920,map00061,map00071,map01100,map01212,map03320,map04920
KEGG ModuleM00086
GOsGO:0000003,GO:0000038,GO:0001552,GO:0001676,GO:0003006,GO:0003674,GO:0003824,GO:0004467,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006635,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007272,GO:0007275,GO:0007399,GO:0007548,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0008610,GO:0009056,GO:0009058,GO:0009062,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0012505,GO:0014070,GO:0015645,GO:0016020,GO:0016042,GO:0016053,GO:0016054,GO:0016289,GO:0016405,GO:0016787,GO:0016788,GO:0016790,GO:0016874,GO:0016877,GO:0016878,GO:0018130,GO:0019395,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019752,GO:0022414,GO:0030258,GO:0031957,GO:0031960,GO:0032501,GO:0032502,GO:0032787,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034440,GO:0034641,GO:0034654,GO:0034976,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0042221,GO:0042552,GO:0042592,GO:0042749,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045187,GO:0045938,GO:0046390,GO:0046394,GO:0046395,GO:0046483,GO:0046545,GO:0046660,GO:0046949,GO:0047617,GO:0048513,GO:0048518,GO:0048520,GO:0048545,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050795,GO:0050896,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051384,GO:0051716,GO:0055086,GO:0055114,GO:0060249,GO:0061458,GO:0065007,GO:0065008,GO:0070050,GO:0071616,GO:0071704,GO:0072329,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901575,GO:1901576
EggNOG free text desc.acyl-CoA synthetase bubblegum family member
EggNOG OGs39DMK@33154,COG1022@1,KOG1256@2759
EC6.2.1.3
COG Functional cat.I
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Exons2
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.751534-CDS-H-elongata_contig103454:955..10001622929569.751534-CDS-H-elongata_contig103454:955..1000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103454 956..1000 +
1691679074.597946-CDS-H-elongata_contig103454:955..10001691679074.597946-CDS-H-elongata_contig103454:955..1000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103454 956..1000 +
1622929569.7708137-CDS-H-elongata_contig103454:1627..17591622929569.7708137-CDS-H-elongata_contig103454:1627..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103454 1628..1759 +
1691679074.6076736-CDS-H-elongata_contig103454:1627..17591691679074.6076736-CDS-H-elongata_contig103454:1627..1759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103454 1628..1759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103454.287.1prot_H-elongata_contig103454.287.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103454 956..1759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103454.287.1

>prot_H-elongata_contig103454.287.1 ID=prot_H-elongata_contig103454.287.1|Name=mRNA_H-elongata_contig103454.287.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
ESIVSYLPLSHIAAQILDIHGPMYLGCLVAFAQPDALKGSLVKTLREIHP
TVFFGVPRV
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mRNA from alignment at H-elongata_contig103454:956..1759+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103454.287.1 ID=mRNA_H-elongata_contig103454.287.1|Name=mRNA_H-elongata_contig103454.287.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=804bp|location=Sequence derived from alignment at H-elongata_contig103454:956..1759+ (Himanthalia elongata Himel1 dioecious)
GAGAGCATCGTGTCTTACCTTCCCCTCAGCCACATCGCTGCACAGGTGAG
CCGCCCCAGTTTTGGGAGGGGATGCTCAAAATTCCTCCCCTGTCGGGGAT
CCAGACTATATAGAAAAGACTTTTCGCACATGGCTGAATTTTTATTTGAT
ATTTGAACGGCCTGTAACCGAGTTTTGAGTTTTTGGTGGCCTGATATTTG
GACACATTATGAGAGTTTTTGATTATGTAGGCTAAAATATTTTTGATTTT
TTTGGGGGGGGTGGNNNNNNNNNNGGTGGGTGTGGGTTTGGAAAGTATAC
GTTCCATATTTTCGCTATAAGCCAGCGCATTGTTGTTACATGTATCACGA
TTATCACGTTTTTGTCGTCCTTGTAGTCACAGGTGAACGAGGAAGACCCA
CCACGTCGCGAAGACTTAGGGTTATGTTTGGATCTGTCGCAAAGTGGAGT
TAGGGCTTGGCTTTGAGTTAGGGTTAGGGTTATGAGATGCCGTCTTGAAT
TCACGGCCAGTTTCTCCTAACCCCGTACCATTTTTTATGTTTAGCGCTTT
AATGTGCAAATGCAGTGAAGTTGTACTGTCCGCATATATATATATATATA
TATATATATACATTTTTTTTAATGCATTTTTTGTTTCCTGTGTTTTGTTT
CGTTATCGCATCTCCCATGCAGATTTTGGACATCCATGGCCCCATGTATT
TGGGGTGTTTGGTGGCTTTCGCACAGCCAGACGCCCTCAAGGGGTCTCTC
GTCAAGACCCTCCGAGAGATCCACCCTACTGTTTTCTTTGGAGTTCCCAG
GGTA
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Coding sequence (CDS) from alignment at H-elongata_contig103454:956..1759+

>mRNA_H-elongata_contig103454.287.1 ID=mRNA_H-elongata_contig103454.287.1|Name=mRNA_H-elongata_contig103454.287.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig103454:956..1759+ (Himanthalia elongata Himel1 dioecious)
GAGAGCATCGTGTCTTACCTTCCCCTCAGCCACATCGCTGCACAGGAGAG
CATCGTGTCTTACCTTCCCCTCAGCCACATCGCTGCACAGATTTTGGACA
TCCATGGCCCCATGTATTTGGGGTGTTTGGTGGCTTTCGCACAGCCAGAC
GCCCTCAAGGGGTCTCTCGTCAAGACCCTCCGAGAGATCCACCCTACTGT
TTTCTTTGGAGTTCCCAGGGTAATTTTGGACATCCATGGCCCCATGTATT
TGGGGTGTTTGGTGGCTTTCGCACAGCCAGACGCCCTCAAGGGGTCTCTC
GTCAAGACCCTCCGAGAGATCCACCCTACTGTTTTCTTTGGAGTTCCCAG
GGTA
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