prot_H-elongata_contig141327.2869.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig141327.2869.1
Unique Nameprot_H-elongata_contig141327.2869.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length69
Homology
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A2N5VPW3_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VPW3_9BASI)

HSP 1 Score: 55.1 bits (131), Expect = 3.970e-7
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    4 TKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES 68
            T+DVG+     PV+   L  +ADAD++SCP ++R VSG  ++L    ISW S  Q  ++ +S+E+
Sbjct: 1145 TRDVGLKLSKNPVAQDSLVGYADADWASCPESRRSVSGNLILLNGNVISWKSKKQPTLSLSSTEA 1209          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A3Q7EXY0_SOLLC (Uncharacterized protein n=2 Tax=Solanum subgen. Lycopersicon TaxID=49274 RepID=A0A3Q7EXY0_SOLLC)

HSP 1 Score: 52.8 bits (125), Expect = 5.830e-7
Identity = 23/49 (46.94%), Postives = 36/49 (73.47%), Query Frame = 0
Query:   20 KLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES 68
            KL+V+ DAD++SCPNT+RLVSG  +  G   +SW S  Q +++ +S+E+
Sbjct:   57 KLSVYCDADWASCPNTRRLVSGFLINHGETLLSWKSKKQSIVSRSSAEA 105          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A2S4WBA9_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Puccinia striiformis TaxID=27350 RepID=A0A2S4WBA9_9BASI)

HSP 1 Score: 52.4 bits (124), Expect = 3.550e-6
Identity = 24/65 (36.92%), Postives = 40/65 (61.54%), Query Frame = 0
Query:    4 TKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES 68
            T+++G+ +  T      L  +ADAD++SCP ++R VSG  V+L    ISW S  Q  ++ +S+E+
Sbjct: 1072 TREIGLRFNKTQQGLNSLVGYADADWASCPESRRSVSGNLVLLNGNVISWKSKKQPTLSLSSTEA 1136          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: Q53LF4_ORYSJ (Retrotransposon protein, putative, unclassified n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53LF4_ORYSJ)

HSP 1 Score: 48.9 bits (115), Expect = 8.600e-6
Identity = 22/52 (42.31%), Postives = 36/52 (69.23%), Query Frame = 0
Query:   17 SCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES 68
            S   L+ ++DAD++SCP+TQ+  SG AV LG   +SW S  Q+ ++ +S+E+
Sbjct:   33 STVDLSAYSDADWASCPDTQKSTSGYAVFLGDNLVSWSSKRQRTVSCSSAEA 84          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A3Q7FJT0_SOLLC (Uncharacterized protein n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7FJT0_SOLLC)

HSP 1 Score: 51.2 bits (121), Expect = 8.640e-6
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 0
Query:   17 SCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES 68
            S  KL+V  DAD++SCPNT+R VSG  V  G   +SW S  Q V++ +S+E+
Sbjct:  291 SSNKLSVHCDADWASCPNTRRSVSGFIVKHGETLLSWKSKKQNVVSRSSAEA 342          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A2N5TMK0_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5TMK0_9BASI)

HSP 1 Score: 50.8 bits (120), Expect = 1.210e-5
Identity = 25/65 (38.46%), Postives = 40/65 (61.54%), Query Frame = 0
Query:    4 TKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES 68
            +KD+G+    +     KL  +ADAD++SCP ++RLVSG  V+L    ISW S  Q  ++ + +E+
Sbjct:  242 SKDIGLKLSKSDSPDIKLVGYADADWASCPESRRLVSGNLVLLNGNVISWKSKKQPTLSLSLTEA 306          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI0009052F52 (uncharacterized protein LOC109243831 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI0009052F52)

HSP 1 Score: 50.4 bits (119), Expect = 1.560e-5
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    5 KDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES 68
            K+ G+    +    TKL  + DAD++SCPNT++ V+G  V LG   ISW S  Q  I+ +S+E+
Sbjct:  119 KNPGLGILMSSTGSTKLQAYCDADWASCPNTRKSVTGYMVTLGDSLISWKSKKQNTISRSSAEA 182          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI00090505CF (uncharacterized protein LOC109238284 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI00090505CF)

HSP 1 Score: 50.1 bits (118), Expect = 2.060e-5
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    5 KDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES 68
            K+ G+    +    TKL  + DAD++SCPNT++ V+G  V LG   ISW S  Q  I+ +S+E+
Sbjct:  123 KNPGLGILMSSTGFTKLQAYCDADWASCPNTRKSVTGYMVTLGDSLISWKSKKQNTISRSSAEA 186          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI00142D6B46 (uncharacterized protein LOC103832953 isoform X1 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D6B46)

HSP 1 Score: 49.7 bits (117), Expect = 3.190e-5
Identity = 24/61 (39.34%), Postives = 40/61 (65.57%), Query Frame = 0
Query:    8 GITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES 68
            G+ Y  T  S  KL+ +ADAD+ +CP+T+R VSG  + +G   ++W S  Q+ ++ +S+ES
Sbjct: 1314 GLFYSST--SDMKLSAFADADWGTCPDTRRSVSGLCMFVGPALVAWKSNKQETVSCSSAES 1372          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A1S4AG43_TOBAC (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4AG43_TOBAC)

HSP 1 Score: 47.8 bits (112), Expect = 5.560e-5
Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:   19 TKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES 68
            ++++V+ DAD++SCPNT++ VSG  V  G   ISW S  Q  ++ +S+E+
Sbjct:   51 SEISVFCDADWASCPNTRKSVSGYLVKFGESPISWKSKKQNTVSKSSAEA 100          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A2N5VPW3_9BASI3.970e-740.00Integrase catalytic domain-containing protein n=2 ... [more]
A0A3Q7EXY0_SOLLC5.830e-746.94Uncharacterized protein n=2 Tax=Solanum subgen. Ly... [more]
A0A2S4WBA9_9BASI3.550e-636.92Integrase catalytic domain-containing protein n=1 ... [more]
Q53LF4_ORYSJ8.600e-642.31Retrotransposon protein, putative, unclassified n=... [more]
A0A3Q7FJT0_SOLLC8.640e-648.08Uncharacterized protein n=1 Tax=Solanum lycopersic... [more]
A0A2N5TMK0_9BASI1.210e-538.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0009052F521.560e-540.63uncharacterized protein LOC109243831 n=1 Tax=Nicot... [more]
UPI00090505CF2.060e-540.63uncharacterized protein LOC109238284 n=1 Tax=Nicot... [more]
UPI00142D6B463.190e-539.34uncharacterized protein LOC103832953 isoform X1 n=... [more]
A0A1S4AG43_TOBAC5.560e-542.00uncharacterized mitochondrial protein AtMg00810-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141327contigH-elongata_contig141327:106..312 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141327.2869.1mRNA_H-elongata_contig141327.2869.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig141327 85..597 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig141327.2869.1 ID=prot_H-elongata_contig141327.2869.1|Name=mRNA_H-elongata_contig141327.2869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVA
ISWFSGVQKVIATASSES*
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