mRNA_H-elongata_contig141327.2869.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141327.2869.1
Unique NamemRNA_H-elongata_contig141327.2869.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A7R9UQB3_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UQB3_DIALT)

HSP 1 Score: 108 bits (270), Expect = 3.380e-26
Identity = 63/171 (36.84%), Postives = 93/171 (54.39%), Query Frame = 1
Query:    1 AKRTVQYMWHTKDVGITYG-GTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTF 510
            A+R +QY+  T  +G+ +  G    C  L  +ADAD+++ P  ++  +G  V      ISW SG+Q  I+ +S E+ +VAL+    E+ +LR +  FL  P      I EDN G I +  N  + RRT+HV VK H VRDA E G + +  V +   H D++TKA    TF
Sbjct:   44 ARRVLQYLRGTAQLGLLFKYGEDAECATLRAFADADWANDPVQRKSTTGYIVFFNGAPISWHSGLQSTISLSSCEAEYVALSECCREVDYLRSIIDFLPQPSASPTEIFEDNQGTIDLVNNPVHHRRTKHVEVKYHYVRDAQEKGRIVVSKVHTSLNHADIMTKATDNATF 214          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A7R9UMU9_DIALT (Hypothetical protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UMU9_DIALT)

HSP 1 Score: 108 bits (270), Expect = 4.560e-26
Identity = 63/171 (36.84%), Postives = 93/171 (54.39%), Query Frame = 1
Query:    1 AKRTVQYMWHTKDVGITYG-GTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTF 510
            A+R +QY+  T  +G+ +  G    C  L  +ADAD+++ P  ++  +G  V      ISW SG+Q  I+ +S E+ +VAL+    E+ +LR +  FL  P      I EDN G I +  N  + RRT+HV VK H VRDA E G + +  V +   H D++TKA    TF
Sbjct:   57 ARRVLQYLRGTAQLGLLFKYGEDAECATLRAFADADWANDPVQRKSTTGYIVFFNGAPISWHSGLQSTISLSSCEAEYVALSECCREVDYLRSIIDFLPQPSASPTEIFEDNQGTIDLVNNPVHHRRTKHVEVKYHYVRDAQEKGRIVVSKVHTSLNHADIMTKATDNATF 227          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI001ABC465B (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABC465B)

HSP 1 Score: 109 bits (273), Expect = 1.880e-25
Identity = 61/170 (35.88%), Postives = 100/170 (58.82%), Query Frame = 1
Query:    4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTFE 513
            KR ++Y+  T D+GI    +  + T L  ++DAD+  CP+T+R  SG  V LG   ISW S  Q  ++ +S+E+ + A+  VV E  +LRQ+   L+  +D   V+  DN  A+ ++ N  + RRT+H+ +  H VRD V +G +R+ +V + +Q  D++TK L   +FE
Sbjct:  204 KRILRYICGTMDLGIMLHAS--TDTVLTAYSDADWVGCPDTRRSTSGYCVFLGPSLISWSSKRQPTVSHSSTEAEYRAVANVVTECSWLRQLLQELSCHVDRATVVYRDNVSAVYLSANSVHHRRTKHIELDIHFVRDQVALGHIRVLHVPTSQQFADIMTKGLPTASFE 371          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A7H4LAS3_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LAS3_WHEAT)

HSP 1 Score: 107 bits (267), Expect = 2.780e-25
Identity = 58/170 (34.12%), Postives = 100/170 (58.82%), Query Frame = 1
Query:    4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTFE 513
            KR ++Y+  T D+G+T   +  +   +  ++DAD++ CP+T+R  SG  V LG   ISW S  Q  ++ +S+E+ + A+  VV E  +LRQ+   L+ P+D   ++  DN  A+ ++ N  + RRT+H+ +  H VR+ V +G VR+ +  + +Q  D++TK L    FE
Sbjct:   90 KRVLRYIRGTMDLGLTLHAS--TALDITAYSDADWTGCPDTRRSTSGYCVYLGPSLISWSSKRQPTVSRSSTEAEYRAVANVVAECSWLRQLLHELSCPVDKATIVYCDNVSAVYLSANPVHHRRTKHIELDIHFVREQVALGHVRVLHAPTSQQFADIMTKGLPTAHFE 257          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI00098ABD7C (uncharacterized mitochondrial protein AtMg00810-like n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098ABD7C)

HSP 1 Score: 108 bits (271), Expect = 5.600e-25
Identity = 59/170 (34.71%), Postives = 98/170 (57.65%), Query Frame = 1
Query:    4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTFE 513
            KR + Y+    D+G+T   +  + T L  + DAD+  CP+T+R  SG  + LG   +SW S  Q  ++ +S+E+ + A+  VV E  +LRQ+   L  P+D   V+  DN  A+ ++ +  + RRT+H+ +  H VRD V +G VR+ +V + +Q  D++TK L   +FE
Sbjct:  222 KRILHYIRGAMDLGLTLRAS--TATDLVAYTDADWDGCPDTRRSTSGYCIFLGPSLVSWSSKRQPTVSRSSAEAEYRAVANVVAECSWLRQLLHELLCPVDKATVVYCDNVFAVYLSAHPVHHRRTKHIELDIHFVRDQVALGHVRVLHVPTSQQFADIMTKGLSTTSFE 389          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI000BE5705B (uncharacterized protein LOC111256744 n=1 Tax=Setaria italica TaxID=4555 RepID=UPI000BE5705B)

HSP 1 Score: 103 bits (256), Expect = 7.920e-24
Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = 1
Query:    4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTF 510
            KR ++Y+  T   G+  G  PV    L  ++DAD++ CP+++R  SG  V LG   ISW S  Q  ++ +S+E+ + A+   V E  +LRQ+   L   I    V+  DN  A+ MA N  + RRT+H+ +  H VR+ V +G VR+ +V S  Q  D++TK L V  F
Sbjct:   71 KRILRYLKGTLSSGLHLGVGPVQ--SLTAYSDADWAGCPDSRRSTSGYCVYLGDNLISWSSKRQTTVSRSSAEAEYRAVAHAVAECCWLRQLLEELHVSISSATVVYCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHVPSSHQFADIMTKGLPVQLF 237          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI001ABC68EE (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001ABC68EE)

HSP 1 Score: 105 bits (261), Expect = 8.170e-24
Identity = 59/170 (34.71%), Postives = 98/170 (57.65%), Query Frame = 1
Query:    4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTFE 513
            KR ++Y+  T  +G+T   +P   T L  ++DAD++ CP+T+R  SG  V LG   ISW S  Q  ++ +S+E+ + A+   V E  +LRQ+   L   +    ++  DN  A+ ++ N  + RRT+H+ +  H VR+ V +G +R+ +V + +Q  DV+TK L   TFE
Sbjct:  175 KRILRYIRGTTALGLTLTASP--STDLVAYSDADWAGCPDTRRSTSGYCVYLGPSLISWSSKRQPTVSPSSAEAEYRAMANAVAECSWLRQLLQELLLDVPKATIVYCDNVSAVCLSANHVHHRRTKHIELDIHFVREQVALGRIRVLHVPTAQQFADVMTKGLPTPTFE 342          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: A0A0A9B536_ARUDO (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9B536_ARUDO)

HSP 1 Score: 102 bits (255), Expect = 3.910e-23
Identity = 62/169 (36.69%), Postives = 94/169 (55.62%), Query Frame = 1
Query:    4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTF 510
            KR ++Y+  T   G+  G  PV    L  ++DAD++ CP+++R  SG  V LG   ISW S  Q  ++ +S+E+ + A+   V E  +LRQ+   L   I    V+  DN  A+ MA N  + RRT+H+ +  H VR+ V +G VR+ +V S  Q  D++TK L V  F
Sbjct:  142 KRILRYLKGTLSSGLHLGVGPVQ--SLTAYSDADWAGCPDSRRSTSGYCVYLGDNLISWSSKRQTTVSRSSAEAEYWAVAHAVAECCWLRQLLEELHVSIPSATVVYCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHVPSSHQFADIMTKGLPVQLF 308          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: Q6ATH4_ORYSJ (Putative polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6ATH4_ORYSJ)

HSP 1 Score: 104 bits (260), Expect = 6.620e-23
Identity = 59/169 (34.91%), Postives = 95/169 (56.21%), Query Frame = 1
Query:    4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTF 510
            KR ++Y+  T  +G+  G TPV    L  ++DAD++ CP++ R  SG  V LG   +SW S  Q  ++ +S+E+ + A+   + E  +LRQ+   L   +    V+  DN  A+ MA N  + RRT+H+ +  H VR+ V +G VR+ ++ S  Q  D++TK L V  F
Sbjct: 1294 KRILRYIKGTLHIGLHLGTTPVD--SLTAYSDADWAGCPDSHRSTSGYCVFLGDNLVSWSSKRQTTVSRSSAEAEYRAVAHAIAECCWLRQLLSELHISLTSATVVYCDNVSAVYMAANPVHHRRTKHIEIDIHFVREKVALGQVRVLHLPSSHQFADIMTKGLPVQLF 1460          
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Match: UPI00098B6346 (uncharacterized mitochondrial protein AtMg00810-like n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI00098B6346)

HSP 1 Score: 103 bits (256), Expect = 8.230e-23
Identity = 58/170 (34.12%), Postives = 98/170 (57.65%), Query Frame = 1
Query:    4 KRTVQYMWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVAISWFSGVQKVIATASSES*FVALTGVVNELRFLRQVKGFLTPPIDDNIVIREDNGGAIKMATNCFNRRRTRHVAVKRHIVRDAVEIGVVRIHYVKSGEQHGDVLTKALGVNTFE 513
            KR ++Y+  T  +G+T   T  +  ++  ++DAD++ CP+T+R  SG  V LG   ISW S  Q  +  +S+E+ + A+   V E  +LRQ+   L   +    V+  DN  A+ ++ N  + RRT+H+ +  H VR+ V +G +R+ +V + +Q  DV+TK L  +TFE
Sbjct:  222 KRILRYIRGTMTLGLTL--TASTSLEMMAYSDADWAGCPDTRRSTSGYCVYLGPSLISWSSKRQPTVPRSSAEAEYRAVANAVAECTWLRQLLQELHHDVSQATVVYCDNVSAVYLSANPVHHRRTKHIELDIHFVREKVALGRIRVLHVPTAQQFADVMTKGLPTSTFE 389          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141327.2869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7R9UQB3_DIALT3.380e-2636.84Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
A0A7R9UMU9_DIALT4.560e-2636.84Hypothetical protein n=1 Tax=Diacronema lutheri Ta... [more]
UPI001ABC465B1.880e-2535.88uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A7H4LAS3_WHEAT2.780e-2534.12Genome assembly, chromosome: II n=1 Tax=Triticum a... [more]
UPI00098ABD7C5.600e-2534.71uncharacterized mitochondrial protein AtMg00810-li... [more]
UPI000BE5705B7.920e-2436.69uncharacterized protein LOC111256744 n=1 Tax=Setar... [more]
UPI001ABC68EE8.170e-2434.71uncharacterized mitochondrial protein AtMg00810-li... [more]
A0A0A9B536_ARUDO3.910e-2336.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q6ATH4_ORYSJ6.620e-2334.91Putative polyprotein n=2 Tax=Oryza sativa subsp. j... [more]
UPI00098B63468.230e-2334.12uncharacterized mitochondrial protein AtMg00810-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141327contigH-elongata_contig141327:85..597 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141327.2869.1prot_H-elongata_contig141327.2869.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141327 106..312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.6485205-UTR-H-elongata_contig141327:84..1051622929840.6485205-UTR-H-elongata_contig141327:84..105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141327 85..105 +
1691679178.988562-UTR-H-elongata_contig141327:84..1051691679178.988562-UTR-H-elongata_contig141327:84..105Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141327 85..105 +
1622929840.6752465-UTR-H-elongata_contig141327:312..5971622929840.6752465-UTR-H-elongata_contig141327:312..597Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141327 313..597 +
1691679179.015973-UTR-H-elongata_contig141327:312..5971691679179.015973-UTR-H-elongata_contig141327:312..597Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig141327 313..597 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929840.662005-CDS-H-elongata_contig141327:105..3121622929840.662005-CDS-H-elongata_contig141327:105..312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141327 106..312 +
1691679179.0065165-CDS-H-elongata_contig141327:105..3121691679179.0065165-CDS-H-elongata_contig141327:105..312Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141327 106..312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141327.2869.1

>prot_H-elongata_contig141327.2869.1 ID=prot_H-elongata_contig141327.2869.1|Name=mRNA_H-elongata_contig141327.2869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MWHTKDVGITYGGTPVSCTKLAVWADADFSSCPNTQRLVSGGAVMLGRVA
ISWFSGVQKVIATASSES*
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mRNA from alignment at H-elongata_contig141327:85..597+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141327.2869.1 ID=mRNA_H-elongata_contig141327.2869.1|Name=mRNA_H-elongata_contig141327.2869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=513bp|location=Sequence derived from alignment at H-elongata_contig141327:85..597+ (Himanthalia elongata Himel1 dioecious)
GCGAAAAGGACAGTACAATATATGTGGCACACGAAGGACGTTGGGATCAC CTATGGAGGAACGCCGGTGTCGTGCACAAAACTGGCGGTGTGGGCGGACG CTGACTTTTCCTCTTGCCCAAACACTCAGCGTTTGGTTTCTGGTGGAGCG GTGATGCTGGGGAGGGTGGCGATCAGTTGGTTCTCGGGGGTGCAGAAGGT GATCGCAACTGCGTCATCAGAATCATAGTTTGTGGCACTGACAGGAGTTG TAAATGAACTCCGTTTCCTTCGACAGGTGAAGGGCTTCTTGACGCCACCG ATCGACGACAACATTGTAATCAGGGAAGATAATGGAGGGGCTATCAAGAT GGCGACCAACTGTTTCAACAGGAGGCGTACGAGGCACGTGGCCGTGAAAC GCCACATCGTCCGCGATGCTGTAGAGATTGGTGTAGTTCGAATCCATTAC GTTAAGTCGGGGGAGCAACATGGAGATGTGCTGACAAAAGCGTTGGGCGT CAACACCTTCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig141327:85..597+

>mRNA_H-elongata_contig141327.2869.1 ID=mRNA_H-elongata_contig141327.2869.1|Name=mRNA_H-elongata_contig141327.2869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig141327:85..597+ (Himanthalia elongata Himel1 dioecious)
ATGTGGCACACGAAGGACGTTGGGATCACCTATGGAGGAACGCCGGTGTC
GTGCACAAAACTGGCGGTGTGGGCGGACGCTGACTTTTCCTCTTGCCCAA
ACACTCAGCGTTTGGTTTCTGGTGGAGCGGTGATGCTGGGGAGGGTGGCG
ATCAGTTGGTTCTCGGGGGTGCAGAAGGTGATCGCAACTGCGTCATCAGA
ATCATAGATGTGGCACACGAAGGACGTTGGGATCACCTATGGAGGAACGC
CGGTGTCGTGCACAAAACTGGCGGTGTGGGCGGACGCTGACTTTTCCTCT
TGCCCAAACACTCAGCGTTTGGTTTCTGGTGGAGCGGTGATGCTGGGGAG
GGTGGCGATCAGTTGGTTCTCGGGGGTGCAGAAGGTGATCGCAACTGCGT
CATCAGAATCATAG
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