mRNA_H-elongata_contig141193.2852.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig141193.2852.1
Unique NamemRNA_H-elongata_contig141193.2852.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: D8LBH8_ECTSI (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH8_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 2.650e-85
Identity = 128/154 (83.12%), Postives = 137/154 (88.96%), Query Frame = 1
Query:    7 VTIVCVDMSQAFLAPMTTVAGAAAVRRGSSLSMASDNSYHKKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
            V   CV  SQAF+ P  TV+GA+     SSL+MA++N+YHKKDFWIAPSILSADMAKLG+EVDNAM AGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVT PIDVHLMVSPVDRIVGDFA AGASFITFHPEASPHVDRTL LIKS+GCKAG
Sbjct:    8 VAFACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAG 161          
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A835YRZ4_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ4_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.260e-68
Identity = 109/129 (84.50%), Postives = 117/129 (90.70%), Query Frame = 1
Query:   82 RRGSSLSMASDNSYHKKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
            R  SSL MA +N++H+KDF IAPSILSADMAKLGEEVDNAM AGAD+VHFDVMDNHYVPNLTIGPLVCK LR+HGV   IDVHLMVSPVDRIVGDFA AGAS+ITFHPEASPHVDRTLQLIKS GCK+G
Sbjct:   27 RPTSSLRMA-NNAWHRKDFQIAPSILSADMAKLGEEVDNAMAAGADVVHFDVMDNHYVPNLTIGPLVCKALRNHGVKNDIDVHLMVSPVDRIVGDFAEAGASYITFHPEASPHVDRTLQLIKSTGCKSG 154          
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: W7TD18_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD18_9STRA)

HSP 1 Score: 209 bits (533), Expect = 1.460e-65
Identity = 98/114 (85.96%), Postives = 106/114 (92.98%), Query Frame = 1
Query:  127 KKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
            KKDFWIAPSILSAD AKLG+EVDN + AGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFA+AGASFITFHPEA+ H+DRTLQLIKS GCK+G
Sbjct:   40 KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSG 153          
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2S2V7_9STRA (Ribulose-phosphate 3-epimerase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2V7_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.780e-62
Identity = 94/114 (82.46%), Postives = 104/114 (91.23%), Query Frame = 1
Query:  127 KKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
            +KDF IAPSILSAD A LG EV N M AGAD+VHFDVMDNHYVPNLTIGP+VCK LR++G+ QPIDVHLMVSPVDRI+GDFA AGA++ITFHPEASPHVDRTLQLIKS+GCKAG
Sbjct:   68 EKDFLIAPSILSADFATLGPEVANVMAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNYGIEQPIDVHLMVSPVDRIIGDFAEAGATYITFHPEASPHVDRTLQLIKSYGCKAG 181          
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: F0YLQ5_AURAN (Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ5_AURAN)

HSP 1 Score: 200 bits (509), Expect = 8.480e-62
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 1
Query:  130 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
            KDF IAPSILSAD A+LGEEV N++ AGAD+VHFDVMDNHYVPNLTIGP+VC  LR HGVT PIDVHLMVSPVDRIVGDFA+AGAS+ITFHPEASPHVDRTLQLI+  GCKAG
Sbjct:   43 KDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAG 155          
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2UWQ6_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ6_9STRA)

HSP 1 Score: 200 bits (508), Expect = 1.280e-61
Identity = 104/155 (67.10%), Postives = 121/155 (78.06%), Query Frame = 1
Query:    4 IVTIVCVDMSQAFLAPMTTVAGAAAVRRGSSLSMASDNSYHKKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
            IV  + V +S  FL P T   G    +  SSL M +D  +  KD+ IAPSILSA+ AKLGEEVDN + AGAD+VHFDVMDNHYVPNLTIGP+VCK L+DHGVT PIDVHLMV PVDRI+GDFA+AGA +ITFHPEAS H+DR+L LIKS GCK+G
Sbjct:    9 IVLFLLVAVSCGFLTPQTLGLGTRVSK--SSLKMGAD--FPDKDYLIAPSILSANFAKLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALKDHGVTAPIDVHLMVDPVDRIIGDFADAGADYITFHPEASGHIDRSLGLIKSLGCKSG 159          
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: UPI00111978BC (ribulose-phosphate 3-epimerase n=1 Tax=Methylotetracoccus oryzae TaxID=1919059 RepID=UPI00111978BC)

HSP 1 Score: 198 bits (503), Expect = 1.690e-61
Identity = 91/113 (80.53%), Postives = 102/113 (90.27%), Query Frame = 1
Query:  130 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
            KDFWIAPSILSAD A+LGEEVDN ++AGADIVHFDVMDNHYVPNLTIGPLVC+ LR HGVT PIDVHLMV PVDRI+ DFA AGA++ITFHPEAS HVDR+LQL++  GCK+G
Sbjct:    2 KDFWIAPSILSADFARLGEEVDNVLKAGADIVHFDVMDNHYVPNLTIGPLVCEALRKHGVTAPIDVHLMVKPVDRIIPDFAKAGATYITFHPEASEHVDRSLQLVRDSGCKSG 114          
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2LR41_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LR41_9STRA)

HSP 1 Score: 199 bits (507), Expect = 2.030e-61
Identity = 93/113 (82.30%), Postives = 103/113 (91.15%), Query Frame = 1
Query:  130 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
            KD+ IAPSILSA+ AKLGEEVDN +EAGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD I+G+FA AGAS+ITFHPEA+ HVDR+LQLIK  GCKAG
Sbjct:   56 KDYLIAPSILSANFAKLGEEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAIIGEFAKAGASYITFHPEATSHVDRSLQLIKGEGCKAG 168          
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2E7A3_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7A3_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.320e-61
Identity = 93/113 (82.30%), Postives = 103/113 (91.15%), Query Frame = 1
Query:  130 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
            KD+ IAPSILSAD AKLGEEVDN +EAGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD  +GDF +AGAS+ITFHPEA+ HVDR+LQLIK+ GCKAG
Sbjct:   37 KDYLIAPSILSADFAKLGEEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAIGDFIDAGASYITFHPEATNHVDRSLQLIKAGGCKAG 149          
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S1BBA4_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA4_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.390e-61
Identity = 91/113 (80.53%), Postives = 102/113 (90.27%), Query Frame = 1
Query:  130 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
            KD+ IAPSILSAD AKLG+EVDN +EAGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD ++GDF NAGAS+ITFHPEA+ H+DR+LQLIK  GCK G
Sbjct:   38 KDYLIAPSILSADFAKLGQEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAVIGDFINAGASYITFHPEATNHIDRSLQLIKEGGCKCG 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBH8_ECTSI2.650e-8583.12Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus ... [more]
A0A835YRZ4_9STRA1.260e-6884.50Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema m... [more]
W7TD18_9STRA1.460e-6585.96Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsida... [more]
A0A7S2S2V7_9STRA1.780e-6282.46Ribulose-phosphate 3-epimerase (Fragment) n=1 Tax=... [more]
F0YLQ5_AURAN8.480e-6284.07Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus... [more]
A0A7S2UWQ6_9STRA1.280e-6167.10Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa ... [more]
UPI00111978BC1.690e-6180.53ribulose-phosphate 3-epimerase n=1 Tax=Methylotetr... [more]
A0A7S2LR41_9STRA2.030e-6182.30Ribulose-phosphate 3-epimerase n=1 Tax=Leptocylind... [more]
A0A7S2E7A3_9STRA2.320e-6182.30Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum bri... [more]
A0A7S1BBA4_9STRA2.390e-6180.53Ribulose-phosphate 3-epimerase n=2 Tax=Corethron h... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig141193contigH-elongata_contig141193:156..623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score201.8
Seed ortholog evalue2.3e-49
Seed eggNOG ortholog44056.XP_009041362.1
KEGG rclassRC00540
KEGG koko:K01783
KEGG ReactionR01529
KEGG Pathwayko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007
EggNOG free text desc.ribulose-phosphate 3-epimerase activity
EggNOG OGsCOG0036@1,KOG3111@2759
EC5.1.3.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionribulose-phosphate 3-epimerase
Ec32 orthologEc-27_003930.1
Exons1
Model size468
Cds size468
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929839.026069-CDS-H-elongata_contig141193:155..6231622929839.026069-CDS-H-elongata_contig141193:155..623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141193 156..623 -
1691679178.3790662-CDS-H-elongata_contig141193:155..6231691679178.3790662-CDS-H-elongata_contig141193:155..623Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig141193 156..623 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig141193.2852.1prot_H-elongata_contig141193.2852.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig141193 156..623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig141193.2852.1

>prot_H-elongata_contig141193.2852.1 ID=prot_H-elongata_contig141193.2852.1|Name=mRNA_H-elongata_contig141193.2852.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MIVTIVCVDMSQAFLAPMTTVAGAAAVRRGSSLSMASDNSYHKKDFWIAP
SILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRD
HGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKS
HGCKAG
back to top

mRNA from alignment at H-elongata_contig141193:156..623-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig141193.2852.1 ID=mRNA_H-elongata_contig141193.2852.1|Name=mRNA_H-elongata_contig141193.2852.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=468bp|location=Sequence derived from alignment at H-elongata_contig141193:156..623- (Himanthalia elongata Himel1 dioecious)
ATGATTGTGACTATTGTATGTGTTGATATGAGCCAGGCATTCTTGGCACC TATGACTACTGTTGCGGGCGCGGCTGCGGTGCGACGGGGCTCTTCCCTCA GCATGGCCTCCGACAATTCTTACCACAAGAAGGACTTCTGGATCGCCCCA TCCATCCTGTCGGCAGACATGGCAAAGTTGGGCGAGGAGGTAGACAATGC GATGGAAGCAGGAGCAGACATTGTCCATTTTGACGTGATGGACAATCACT ACGTGCCCAACCTCACCATCGGCCCCCTCGTGTGCAAGGGGCTGAGGGAC CATGGGGTGACCCAGCCGATTGACGTGCACCTTATGGTTTCCCCCGTGGA CCGCATTGTCGGCGATTTTGCCAACGCCGGCGCCTCGTTCATCACCTTCC ACCCTGAGGCATCACCCCACGTTGATCGTACCCTCCAGCTCATCAAGTCA CACGGGTGCAAAGCTGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig141193:156..623-

>mRNA_H-elongata_contig141193.2852.1 ID=mRNA_H-elongata_contig141193.2852.1|Name=mRNA_H-elongata_contig141193.2852.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig141193:156..623- (Himanthalia elongata Himel1 dioecious)
ATGATTGTGACTATTGTATGTGTTGATATGAGCCAGGCATTCTTGGCACC
TATGACTACTGTTGCGGGCGCGGCTGCGGTGCGACGGGGCTCTTCCCTCA
GCATGGCCTCCGACAATTCTTACCACAAGAAGGACTTCTGGATCGCCCCA
TCCATCCTGTCGGCAGACATGGCAAAGTTGGGCGAGGAGGTAGACAATGC
GATGGAAGCAGGAGCAGACATTGTCCATTTTGACGTGATGGACAATCACT
ACGTGCCCAACCTCACCATCGGCCCCCTCGTGTGCAAGGGGCTGAGGGAC
CATGGGGTGACCCAGCCGATTGACGTGCACCTTATGGTTTCCCCCGTGGA
CCGCATTGTCGGCGATTTTGCCAACGCCGGCGCCTCGTTCATCACCTTCC
ACCCTGAGGCATCACCCCACGTTGATCGTACCCTCCAGCTCATCAAGTCA
CACGGGTGCAAAGCTGGTATGATTGTGACTATTGTATGTGTTGATATGAG
CCAGGCATTCTTGGCACCTATGACTACTGTTGCGGGCGCGGCTGCGGTGC
GACGGGGCTCTTCCCTCAGCATGGCCTCCGACAATTCTTACCACAAGAAG
GACTTCTGGATCGCCCCATCCATCCTGTCGGCAGACATGGCAAAGTTGGG
CGAGGAGGTAGACAATGCGATGGAAGCAGGAGCAGACATTGTCCATTTTG
ACGTGATGGACAATCACTACGTGCCCAACCTCACCATCGGCCCCCTCGTG
TGCAAGGGGCTGAGGGACCATGGGGTGACCCAGCCGATTGACGTGCACCT
TATGGTTTCCCCCGTGGACCGCATTGTCGGCGATTTTGCCAACGCCGGCG
CCTCGTTCATCACCTTCCACCCTGAGGCATCACCCCACGTTGATCGTACC
CTCCAGCTCATCAAGTCACACGGGTGCAAAGCTGGT
back to top