mRNA_H-elongata_contig141193.2852.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: D8LBH8_ECTSI (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH8_ECTSI) HSP 1 Score: 260 bits (664), Expect = 2.650e-85 Identity = 128/154 (83.12%), Postives = 137/154 (88.96%), Query Frame = 1
Query: 7 VTIVCVDMSQAFLAPMTTVAGAAAVRRGSSLSMASDNSYHKKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
V CV SQAF+ P TV+GA+ SSL+MA++N+YHKKDFWIAPSILSADMAKLG+EVDNAM AGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVT PIDVHLMVSPVDRIVGDFA AGASFITFHPEASPHVDRTL LIKS+GCKAG
Sbjct: 8 VAFACVGASQAFVVPTATVSGASTRHTSSSLTMAAENAYHKKDFWIAPSILSADMAKLGQEVDNAMSAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTNPIDVHLMVSPVDRIVGDFAEAGASFITFHPEASPHVDRTLGLIKSYGCKAG 161
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A835YRZ4_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRZ4_9STRA) HSP 1 Score: 218 bits (554), Expect = 1.260e-68 Identity = 109/129 (84.50%), Postives = 117/129 (90.70%), Query Frame = 1
Query: 82 RRGSSLSMASDNSYHKKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
R SSL MA +N++H+KDF IAPSILSADMAKLGEEVDNAM AGAD+VHFDVMDNHYVPNLTIGPLVCK LR+HGV IDVHLMVSPVDRIVGDFA AGAS+ITFHPEASPHVDRTLQLIKS GCK+G
Sbjct: 27 RPTSSLRMA-NNAWHRKDFQIAPSILSADMAKLGEEVDNAMAAGADVVHFDVMDNHYVPNLTIGPLVCKALRNHGVKNDIDVHLMVSPVDRIVGDFAEAGASYITFHPEASPHVDRTLQLIKSTGCKSG 154
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: W7TD18_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD18_9STRA) HSP 1 Score: 209 bits (533), Expect = 1.460e-65 Identity = 98/114 (85.96%), Postives = 106/114 (92.98%), Query Frame = 1
Query: 127 KKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
KKDFWIAPSILSAD AKLG+EVDN + AGADIVHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVDRI+ DFA+AGASFITFHPEA+ H+DRTLQLIKS GCK+G
Sbjct: 40 KKDFWIAPSILSADFAKLGQEVDNVLAAGADIVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDRIIPDFADAGASFITFHPEATNHIDRTLQLIKSKGCKSG 153
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2S2V7_9STRA (Ribulose-phosphate 3-epimerase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2V7_9STRA) HSP 1 Score: 200 bits (509), Expect = 1.780e-62 Identity = 94/114 (82.46%), Postives = 104/114 (91.23%), Query Frame = 1
Query: 127 KKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
+KDF IAPSILSAD A LG EV N M AGAD+VHFDVMDNHYVPNLTIGP+VCK LR++G+ QPIDVHLMVSPVDRI+GDFA AGA++ITFHPEASPHVDRTLQLIKS+GCKAG
Sbjct: 68 EKDFLIAPSILSADFATLGPEVANVMAAGADVVHFDVMDNHYVPNLTIGPMVCKALRNYGIEQPIDVHLMVSPVDRIIGDFAEAGATYITFHPEASPHVDRTLQLIKSYGCKAG 181
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: F0YLQ5_AURAN (Ribulose-phosphate 3-epimerase n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLQ5_AURAN) HSP 1 Score: 200 bits (509), Expect = 8.480e-62 Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 1
Query: 130 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
KDF IAPSILSAD A+LGEEV N++ AGAD+VHFDVMDNHYVPNLTIGP+VC LR HGVT PIDVHLMVSPVDRIVGDFA+AGAS+ITFHPEASPHVDRTLQLI+ GCKAG
Sbjct: 43 KDFLIAPSILSADFARLGEEVVNSLSAGADVVHFDVMDNHYVPNLTIGPMVCSALRKHGVTAPIDVHLMVSPVDRIVGDFADAGASYITFHPEASPHVDRTLQLIRGAGCKAG 155
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2UWQ6_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWQ6_9STRA) HSP 1 Score: 200 bits (508), Expect = 1.280e-61 Identity = 104/155 (67.10%), Postives = 121/155 (78.06%), Query Frame = 1
Query: 4 IVTIVCVDMSQAFLAPMTTVAGAAAVRRGSSLSMASDNSYHKKDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
IV + V +S FL P T G + SSL M +D + KD+ IAPSILSA+ AKLGEEVDN + AGAD+VHFDVMDNHYVPNLTIGP+VCK L+DHGVT PIDVHLMV PVDRI+GDFA+AGA +ITFHPEAS H+DR+L LIKS GCK+G
Sbjct: 9 IVLFLLVAVSCGFLTPQTLGLGTRVSK--SSLKMGAD--FPDKDYLIAPSILSANFAKLGEEVDNVLAAGADVVHFDVMDNHYVPNLTIGPMVCKALKDHGVTAPIDVHLMVDPVDRIIGDFADAGADYITFHPEASGHIDRSLGLIKSLGCKSG 159
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: UPI00111978BC (ribulose-phosphate 3-epimerase n=1 Tax=Methylotetracoccus oryzae TaxID=1919059 RepID=UPI00111978BC) HSP 1 Score: 198 bits (503), Expect = 1.690e-61 Identity = 91/113 (80.53%), Postives = 102/113 (90.27%), Query Frame = 1
Query: 130 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
KDFWIAPSILSAD A+LGEEVDN ++AGADIVHFDVMDNHYVPNLTIGPLVC+ LR HGVT PIDVHLMV PVDRI+ DFA AGA++ITFHPEAS HVDR+LQL++ GCK+G
Sbjct: 2 KDFWIAPSILSADFARLGEEVDNVLKAGADIVHFDVMDNHYVPNLTIGPLVCEALRKHGVTAPIDVHLMVKPVDRIIPDFAKAGATYITFHPEASEHVDRSLQLVRDSGCKSG 114
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2LR41_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LR41_9STRA) HSP 1 Score: 199 bits (507), Expect = 2.030e-61 Identity = 93/113 (82.30%), Postives = 103/113 (91.15%), Query Frame = 1
Query: 130 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
KD+ IAPSILSA+ AKLGEEVDN +EAGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD I+G+FA AGAS+ITFHPEA+ HVDR+LQLIK GCKAG
Sbjct: 56 KDYLIAPSILSANFAKLGEEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAIIGEFAKAGASYITFHPEATSHVDRSLQLIKGEGCKAG 168
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S2E7A3_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E7A3_9STRA) HSP 1 Score: 199 bits (505), Expect = 2.320e-61 Identity = 93/113 (82.30%), Postives = 103/113 (91.15%), Query Frame = 1
Query: 130 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
KD+ IAPSILSAD AKLGEEVDN +EAGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD +GDF +AGAS+ITFHPEA+ HVDR+LQLIK+ GCKAG
Sbjct: 37 KDYLIAPSILSADFAKLGEEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAAIGDFIDAGASYITFHPEATNHVDRSLQLIKAGGCKAG 149
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Match: A0A7S1BBA4_9STRA (Ribulose-phosphate 3-epimerase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA4_9STRA) HSP 1 Score: 199 bits (505), Expect = 2.390e-61 Identity = 91/113 (80.53%), Postives = 102/113 (90.27%), Query Frame = 1
Query: 130 KDFWIAPSILSADMAKLGEEVDNAMEAGADIVHFDVMDNHYVPNLTIGPLVCKGLRDHGVTQPIDVHLMVSPVDRIVGDFANAGASFITFHPEASPHVDRTLQLIKSHGCKAG 468
KD+ IAPSILSAD AKLG+EVDN +EAGAD+VHFDVMDNHYVPNLTIGP+VCK LRDHGVT PIDVHLMVSPVD ++GDF NAGAS+ITFHPEA+ H+DR+LQLIK GCK G
Sbjct: 38 KDYLIAPSILSADFAKLGQEVDNVLEAGADVVHFDVMDNHYVPNLTIGPMVCKALRDHGVTAPIDVHLMVSPVDAVIGDFINAGASYITFHPEATNHIDRSLQLIKEGGCKCG 150 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig141193.2852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig141193.2852.1 >prot_H-elongata_contig141193.2852.1 ID=prot_H-elongata_contig141193.2852.1|Name=mRNA_H-elongata_contig141193.2852.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp MIVTIVCVDMSQAFLAPMTTVAGAAAVRRGSSLSMASDNSYHKKDFWIAPback to top mRNA from alignment at H-elongata_contig141193:156..623- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig141193.2852.1 ID=mRNA_H-elongata_contig141193.2852.1|Name=mRNA_H-elongata_contig141193.2852.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=468bp|location=Sequence derived from alignment at H-elongata_contig141193:156..623- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig141193:156..623- >mRNA_H-elongata_contig141193.2852.1 ID=mRNA_H-elongata_contig141193.2852.1|Name=mRNA_H-elongata_contig141193.2852.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=936bp|location=Sequence derived from alignment at H-elongata_contig141193:156..623- (Himanthalia elongata Himel1 dioecious)back to top |