mRNA_H-elongata_contig14098.2840.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig14098.2840.1
Unique NamemRNA_H-elongata_contig14098.2840.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI)

HSP 1 Score: 299 bits (765), Expect = 2.440e-90
Identity = 159/256 (62.11%), Postives = 171/256 (66.80%), Query Frame = 3
Query:    3 MVRAIYDENSELRQSS-FLGKEDLKKEDLGLLNKYYVDSFGFPYLLDLAGTIRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHIGK---------------------------------------------------------------GGGKGDGMGHILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLEEEVFGYFKDWAASTMLDKMYKRVLETKKGWGHFIPGRRRYEV 578
            MVRAIYDENSELRQSS  LG+EDLKKEDLGLL  YY  SFGFPYLLDL GTIRSSTD+GDLWYREYHLELTKE+QFPIEMS PWI+ EHI K                                                                 G G  MGH+LVEE+LWALD+YNDAAH ALYVLNSQYLFNEIQAEVNLVFKQLLFDLE EVFGYFKDWAAST+LDK +K+V E ++G GHFIPGRRRYE 
Sbjct:  574 MVRAIYDENSELRQSSGVLGREDLKKEDLGLLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWYREYHLELTKEIQFPIEMSFPWIITEHIVKTKRAMAIGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGGEMGHVLVEEVLWALDVYNDAAHRALYVLNSQYLFNEIQAEVNLVFKQLLFDLEAEVFGYFKDWAASTVLDKAFKKVYEIRRGLGHFIPGRRRYET 829          
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Match: A0A6H5KQX8_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX8_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 6.450e-88
Identity = 156/252 (61.90%), Postives = 168/252 (66.67%), Query Frame = 3
Query:    3 MVRAIYDENSELRQSS-FLGKEDLKKEDLGLLNKYYVDSFGFPYLLDLAGTIRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHIGK-----------------------------------------------------------GGGKGDGMGHILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLEEEVFGYFKDWAASTMLDKMYKRVLETKKGWGHFIPGRRRYEV 578
            MVRAIYDENSELRQSS  LG+EDLK+EDL LL  YY  SFGFPYLLDL GTIRSSTD+GDLWYREYHLELTKE+QFPIEMS PWI+ EHI K                                                                  MGH+LVEE+LWALDLYNDAAH ALYVLNSQYLFNEIQAEVNLVFKQLLFDLE EVFGYFKDWAAST+LDK +K+V E ++G GHFIPGRRRYE 
Sbjct:  284 MVRAIYDENSELRQSSGVLGREDLKREDLELLRTYYEQSFGFPYLLDLGGTIRSSTDLGDLWYREYHLELTKEIQFPIEMSFPWIITEHIVKTKRAMAIGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGHVLVEEVLWALDLYNDAAHRALYVLNSQYLFNEIQAEVNLVFKQLLFDLEAEVFGYFKDWAASTVLDKAFKKVYEIRRGLGHFIPGRRRYET 535          
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Match: A0A7S1UBW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBW1_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.330e-53
Identity = 98/196 (50.00%), Postives = 137/196 (69.90%), Query Frame = 3
Query:    6 VRAIYDENSELRQ-SSFLGKEDLKKEDLGLLNKYYVDSFGFPYLLDLAGTIRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHIGKGGGKGDGMGHILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLEEEVFGYFKDWAASTMLDKMYKRVLETKKGWGHFIPGRRRYEVQYNE 590
            VRA+YDE SE RQ      + DL KED+ +L +++ +SF F YLL+ +GT+R+ +D+GDLWYRE+ LELT  VQFPIEMSLPWIL+EH+ K           LVE+I + LD+YNDAAH ALYVLN QYL++EI+AEVNLVF Q++F + +E+   FKD AA+  +++ YK  LE  +    F   ++RY++  ++
Sbjct:    1 VRALYDERSEARQYRGLFARRDLGKEDVEVLTRFHQESFSFRYLLNYSGTLRACSDLGDLWYREFFLELTGRVQFPIEMSLPWILVEHVIKSQSSAIP----LVEKIFFTLDVYNDAAHRALYVLNRQYLYDEIEAEVNLVFDQMIFLIADEMLKCFKDQAATNRMNRDYKVHLERVRSGDSFHTLKKRYDIPISQ 192          
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Match: A0A7S2F5C9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F5C9_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.380e-50
Identity = 90/196 (45.92%), Postives = 137/196 (69.90%), Query Frame = 3
Query:    3 MVRAIYDENSELRQSSFLG----KEDLKKEDLGLLNKYYVDSFGFPYLLDLAGTIRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHIGKGGGKGDGMGHILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLEEEVFGYFKDWAASTMLDKMYKRVLETKKGWGHFIPGRRRYEV 578
            +VR++YDE ++      +     + DL+KED  +L +++ D + FPYLL+   TIRS +D+GDLWYRE++LE+T++VQFPIE SLPWIL EHI K           LVE++++ LDLYNDAAH AL+VLN Q+L++EI+AEVNLVF QL+F + +E++ Y+K+ +A  +LD   K+  + ++   + +  +RRYE+
Sbjct:  103 IVRSMYDERTQKSHGGIMSFQKTRHDLEKEDRRILEQFFGDIYDFPYLLNYGSTIRSCSDLGDLWYREFYLEITQQVQFPIEASLPWILTEHIIKNQSNDLP----LVEKLIFILDLYNDAAHRALFVLNQQFLYDEIEAEVNLVFDQLIFLMADEMYTYYKNLSAVALLDNSLKQFEQDRRSSRYLVVSKRRYEI 294          
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Match: A0A835YVZ9_9STRA (Cytoplasmic fragile-X interacting family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ9_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.790e-50
Identity = 103/254 (40.55%), Postives = 142/254 (55.91%), Query Frame = 3
Query:    3 MVRAIYDENSELRQSS-FLGKEDLKKEDLGLLNKYYVDSFGFPYLLDLAGTIRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHIGKGGGK---------------------------------------------------------GDGMGH---ILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLEEEVFGYFKDWAAST---MLDKMYKRVLETKKGWGHFIPGRRRY 572
            +VRAI DE+SELRQ S  LGKEDL K+D+  +  +Y +SF FPYL+DL+GTIR+++D+GDLW+REYHLE+T+ +QFP+E S PWIL EH+    GK                                                         G G G     L E +L ALD+YNDAA  AL+   +Q+LF+E+QAEV++ + QL+F LE E++G+ K          LDKMY+R +E ++GWG + P  RR+
Sbjct:  637 VVRAICDESSELRQGSGILGKEDLTKDDMEAMMTFYAESFAFPYLIDLSGTIRAASDLGDLWFREYHLEITQSIQFPLEQSFPWILTEHMVSSSGKSTSAARAAGPSSPADFNSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGAGPEGAALAEAVLCALDVYNDAARAALHTYCAQHLFDEVQAEVSVAYDQLVFQLESEIYGHCKASGFGLELGALDKMYRRRMEERRGWGRYTPAWRRH 890          
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Match: A0A7S3GVR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GVR9_9STRA)

HSP 1 Score: 168 bits (426), Expect = 6.350e-49
Identity = 91/179 (50.84%), Postives = 121/179 (67.60%), Query Frame = 3
Query:    6 VRAIYDENSELR-QSSFLGKEDLKKEDLGLLNKYYVDSFGFPYLLDLAGTIRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHI-GKGGGKGDGMGHILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLEEEVFGYFKDWAASTMLDKMYKRVLETKK 536
            +  + D +SELR +SS  GK D+   ++ L   +Y DSF F Y L+ A T+ S +D+ DLWYRE++LELTK +QFPI+ SLPWIL+EHI  K       M     E +L+ LD+YNDAAH ALYVLN QYL++EI+AE NLV  QL F L EEV+ Y+K+ +AS++LD   K  LE+ K
Sbjct:   45 ISTLCDSHSELRTKSSIFGKTDMDSREVELFTTFYSDSFYFSYALNYAQTLASVSDLSDLWYREHYLELTKCIQFPIDYSLPWILVEHILNKNVSNTPCM-----ENVLFLLDIYNDAAHRALYVLNQQYLYDEIEAESNLVIDQLYFLLSEEVYTYYKNLSASSVLDAKLKHKLESLK 218          
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Match: F0YNJ9_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNJ9_AURAN)

HSP 1 Score: 166 bits (421), Expect = 1.060e-45
Identity = 83/189 (43.92%), Postives = 131/189 (69.31%), Query Frame = 3
Query:    3 MVRAIYDENSELRQSSFLGKEDLKKEDLGLLNKYYVDSFGFPYLLDLAGTIRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHIGKGGGKGDGMGHILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLEEEVFGYFKDWAASTMLDKMYK-RVLETKKGWGHFIPGRR 566
            MVR+++D+ ++L+   F  K DL++EDL L+  +Y +S  F Y+L+ A T+R+++D+ DLWYRE++LEL+ ++QF IE+S PWIL EH+     K       LVE IL+ +D+YNDAAH +LYVL+ ++L++EI+AEVNLVF QL+F + + V+ Y+KD   S  +D  Y+ R+   ++ +   +P RR
Sbjct:  106 MVRSMFDQRNQLKVGMF-SKRDLEREDLQLMETFYNESLCFQYILNHAVTLRANSDLADLWYREFYLELSGQIQFAIELSFPWILTEHVITNQAKSMP----LVENILYTMDVYNDAAHRSLYVLSQRFLYDEIEAEVNLVFDQLIFLISDHVYSYYKDNIGSRTIDGPYRERLFLMRRAYSLDVPARR 289          
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Match: F0YL26_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL26_AURAN)

HSP 1 Score: 162 bits (411), Expect = 8.930e-43
Identity = 79/171 (46.20%), Postives = 122/171 (71.35%), Query Frame = 3
Query:    3 MVRAIYDENSELRQSSFLGKEDLKKEDLGLLNKYYVDSFGFPYLLDLAGTIRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHIGKGGGKGDGMGHILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLEEEVFGYFKDWAASTMLDKMYK 515
            MVR+++D+ ++L+   F  K DL++EDL L+  +Y +S  F Y+L+ A T+R+++D+ DLWYRE++LEL+ ++QF IE+S PWIL EH+     K       LVE IL+ +D+YNDAAH +LYVL+ ++L++EI+AEVNLVF QL+F + + V+ Y+KD   S  +D  Y+
Sbjct:  574 MVRSMFDQRNQLKVGMF-SKRDLEREDLQLMETFYNESLCFQYILNHAVTLRANSDLADLWYREFYLELSGQIQFAIELSFPWILTEHVITNQAKSMP----LVENILYTMDVYNDAAHRSLYVLSQRFLYDEIEAEVNLVFDQLIFLISDHVYSYYKDNIGSRTIDGPYR 739          
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Match: A0A8J2T1L4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1L4_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.440e-41
Identity = 85/196 (43.37%), Postives = 126/196 (64.29%), Query Frame = 3
Query:    3 MVRAIYDENSELRQSSFLGKEDLKKEDLGLLNKYYVDSFGFPYLLDLAGTIRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHIGKGGGKGDGMGHILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLEEEVFGYFKDWAASTMLDKMYKRVLETKKGWGHFIPGRRRYEVQYNE 590
            MVRA+YD  ++LR   F  K+DL+KEDL L++ +Y +S  F YLL+  GT+ S++D+GDLWYRE++LEL+ EVQF IE+SL WIL EH+     K       LVE IL+ LD YNDAAH ++ VL+ ++L++EI+AEVNL+F Q++F + + V+ Y+        +D  +   L         +P  +RY V  ++
Sbjct:  576 MVRAMYDPRNQLRVQ-FFSKKDLEKEDLQLMDYFYCESLCFQYLLNYTGTLTSNSDLGDLWYREFYLELSGEVQFAIELSLAWILAEHVITDQHKSMP----LVENILYTLDTYNDAAHRSISVLSQRFLYDEIEAEVNLIFDQIVFLVSDHVYSYYTKMVGLRHVDAPHHERLHPTLKCAD-VPAAQRYHVPISQ 765          
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Match: A0A058Z0X7_FONAL (DUF1394 domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058Z0X7_FONAL)

HSP 1 Score: 152 bits (383), Expect = 5.180e-39
Identity = 72/175 (41.14%), Postives = 115/175 (65.71%), Query Frame = 3
Query:    3 MVRAIYDENSELRQSSFLGKEDLKKEDLGLLNKYYVDSFGFPYLLDLAGTIRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHIGKGGGKGDGMGHILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLEEEVFGYFKDWAASTMLDKMYKRVLE 527
            ++ ++Y+E +   +  F+  +DL  E  GLL+  + ++  FP +L    ++ +++D+ +LWY+E++L L KE+QFPIEMSLPWIL EH+           H L+E +L+ L+LYNDAA  A++ L S++LF+EIQAEVNL F Q +F L   VF ++K  A+S +++K YK + E
Sbjct:  604 LLDSVYNEKAPGMRGGFMKDKDLSSEQAGLLDAVFQEAHFFPVMLSFGASVEAASDLSELWYKEFYLGLRKEIQFPIEMSLPWILTEHV-----LNPDDAHALIESVLYPLELYNDAAGRAIHKLRSRFLFDEIQAEVNLAFDQFIFALSNAVFEHYKQRASSVLINKEYKLLFE 773          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig14098.2840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Y8_ECTSI2.440e-9062.11UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KQX8_9PHAE6.450e-8861.90UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1UBW1_9STRA1.330e-5350.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S2F5C9_9STRA2.380e-5045.92Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YVZ9_9STRA2.790e-5040.55Cytoplasmic fragile-X interacting family-domain-co... [more]
A0A7S3GVR9_9STRA6.350e-4950.84Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
F0YNJ9_AURAN1.060e-4543.92Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
F0YL26_AURAN8.930e-4346.20Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2T1L4_9STRA1.440e-4143.37Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A058Z0X7_FONAL5.180e-3941.14DUF1394 domain-containing protein n=1 Tax=Fonticul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig14098contigH-elongata_contig14098:5336..7941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score300.8
Seed ortholog evalue4.6e-79
Seed eggNOG ortholog2880.D7G6Y8
KEGG koko:K05749
KEGG Pathwayko03013,ko04810,map03013,map04810
GOsGO:0000902,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006928,GO:0008064,GO:0008150,GO:0009653,GO:0009987,GO:0010639,GO:0016043,GO:0030054,GO:0030175,GO:0030832,GO:0030834,GO:0030835,GO:0031143,GO:0031209,GO:0031252,GO:0032433,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0040011,GO:0042995,GO:0043242,GO:0043244,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0098858,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
EggNOG free text desc.positive regulation of neurotrophin TRK receptor signaling pathway
EggNOG OGsKOG3534@1,KOG3534@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryother localisation
Exons5
Model size596
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig14098.2840.1prot_H-elongata_contig14098.2840.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig14098 5338..7941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.6661503-UTR-H-elongata_contig14098:5335..53371622929837.6661503-UTR-H-elongata_contig14098:5335..5337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14098 5336..5337 +
1691679177.7598784-UTR-H-elongata_contig14098:5335..53371691679177.7598784-UTR-H-elongata_contig14098:5335..5337Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig14098 5336..5337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929837.6848862-CDS-H-elongata_contig14098:5337..53841622929837.6848862-CDS-H-elongata_contig14098:5337..5384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14098 5338..5384 +
1691679177.7697446-CDS-H-elongata_contig14098:5337..53841691679177.7697446-CDS-H-elongata_contig14098:5337..5384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14098 5338..5384 +
1622929837.698854-CDS-H-elongata_contig14098:6415..65501622929837.698854-CDS-H-elongata_contig14098:6415..6550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14098 6416..6550 +
1691679177.7828412-CDS-H-elongata_contig14098:6415..65501691679177.7828412-CDS-H-elongata_contig14098:6415..6550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14098 6416..6550 +
1622929837.7119906-CDS-H-elongata_contig14098:6905..69901622929837.7119906-CDS-H-elongata_contig14098:6905..6990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14098 6906..6990 +
1691679177.8002532-CDS-H-elongata_contig14098:6905..69901691679177.8002532-CDS-H-elongata_contig14098:6905..6990Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14098 6906..6990 +
1622929837.7239265-CDS-H-elongata_contig14098:7203..73411622929837.7239265-CDS-H-elongata_contig14098:7203..7341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14098 7204..7341 +
1691679177.8116612-CDS-H-elongata_contig14098:7203..73411691679177.8116612-CDS-H-elongata_contig14098:7203..7341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14098 7204..7341 +
1622929837.7364168-CDS-H-elongata_contig14098:7752..79411622929837.7364168-CDS-H-elongata_contig14098:7752..7941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14098 7753..7941 +
1691679177.8199277-CDS-H-elongata_contig14098:7752..79411691679177.8199277-CDS-H-elongata_contig14098:7752..7941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig14098 7753..7941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig14098.2840.1

>prot_H-elongata_contig14098.2840.1 ID=prot_H-elongata_contig14098.2840.1|Name=mRNA_H-elongata_contig14098.2840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
MVRAIYDENSELRQSSFLGKEDLKKEDLGLLNKYYVDSFGFPYLLDLAGT
IRSSTDMGDLWYREYHLELTKEVQFPIEMSLPWILIEHIGKGGGKGDGMG
HILVEEILWALDLYNDAAHTALYVLNSQYLFNEIQAEVNLVFKQLLFDLE
EEVFGYFKDWAASTMLDKMYKRVLETKKGWGHFIPGRRRYEVQYNEV*
back to top

mRNA from alignment at H-elongata_contig14098:5336..7941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig14098.2840.1 ID=mRNA_H-elongata_contig14098.2840.1|Name=mRNA_H-elongata_contig14098.2840.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2606bp|location=Sequence derived from alignment at H-elongata_contig14098:5336..7941+ (Himanthalia elongata Himel1 dioecious)
CGATGGTTCGTGCAATTTACGACGAAAATAGCGAACTGAGACAGAGCAGG TGCGCAGCCATGAATATATTATACTATATTATACTATATTATGCTATACT GTACGGAGTACTACATTAGGTATTTCTTCCCCCTTCGCCTCCTAATATAC TACTAATTACTTGTATACACTATAGTATATAGTATATAATACCAAGTACC TAGTGTGCTCAAAGGTAGTAATTAATGCGCACATTCGAACCTGTCAATAG TTAGTCATAGTCCCCTGGACTGCACCTCTCACGACGCTAAAAAGGTGTGG ATGTTCGGAGGTTTGGAATGAGTTCAAGGTTTTTTTAACAAGATTTAATA CCAAGGAAATAATGGTTACAGATGCTTGGACACCACGCGAGTTCTACCGT GTACCGGGAATTGCATCGCTGGTAGAAATACTATGATATTGATATAGTGT AGTAGTAGTAGTATTATTATAGTAGTATTATTAATAGTAGTATTGCTGTA GCTATAGCGGCGAAGTGATGCCCGAAGTGGTAGCTCCGGCGCGGTGTAAG CTGTTCTTACCCACCGTCGTGCGTGGTGTAAGCTGTTCTACCTCAATACA TGTAGCATAAAAATATCGTACGAGCGTCATAACTTTTCTCAGTTTCCTTG GTTTACAATAATAGCATAATACAATAATACCATAATACCATAATAGCATA ATAGCTACTGCAGGATGTTTTATCTGCTTGGGATTATATAGAGCTAATGT TTACTTGTAAGTTATGCTACAATAAAATGAGTTCGTACTCTATATTTTCA ATATAAATATTAAACATGTATACTTCGTACTTGATATTAATAGCCTTTCT TTTCTGTAGACGCTTACACTTTCCCCCGCTGTCGTAGCGCAATATTAGAC GGGATTAGACTATTAGACTGGATTAGACTATTAGACTGGATTAGACTATT AGACGGGATTAGACTATTAGACGGGATTACCAGTTTATGTCATGGACCTT GTTATTAATGAATGTAATGTAATGTTACGTTTGCTTATACCCTGTTGGCC GCACCTTCCTCCTCATACGTCTGGGAGAAGTTTTCTGGGTAAGGAAGATC TCAAGAAGGAGGACTTGGGGCTGCTGAACAAGTACTATGTTGATTCCTTT GGGTTCCCCTATCTCCTGGACTTGGCCGGGACCATTCGCTCCTCAACAGA TATGGGCGATCTATGGTAAGATTCGACACTTCGCCCTGACTGGCTGATTG ATAAGTTCATTCCATGCTAACAAAAACCAGGCACAAACCACAGTAATTTA TATTGTTTGTTGGTACAGTACAGTACACCGTCCAGCTGGTACTTGACTGT ACCTCATCTCACCTCATCTCACCTCATCTCAATGTTAGTTGACTTGACTC CATGCACGGTACGATATTCCATACACGGTACGGTATCCCATACTTCGGTG TTTTCAGCAACCCTCTTCAATTTCGAGGATCTCCATGGTTCCATGATTTC ATACGACGTTCTTCGGAAGTGCATGATATGTAGCAAGATGTGTGGTATGT ACTGGTGTTAACGTAAATAGGTACCGGGAGTACCACCTGGAACTGACGAA GGAGGTTCAGTTCCCGATCGAGATGTCGCTACCTTGGATCTTGATCGAGC ATATCGTCAAGACCAAGCGAGCGATGGCGTTGGGCTCCTCTTCAACCGCT TCGTCTGCCTCTTCTACGAAAACTGCGGCGGGAGCAGCGGGTGATGGCGC ATCCCAAGGAGGAGGCGCTATCGAGAGCAGCGGTAGGGGCGGGGGCTCGG ACGGTCCTTTGACACCTCACAGTTCCTCTTCCTCTCGAAAAGGACAGGGG AAAGGGAAAGGAAAGAAGGGTAAGGGAGGGGGCAAAGGAGACGGGATGGG ACACATCCTCGTGGAGGAGATACTGTGGGCGCTGGACCTGTACAACGATG CTGCGCATACCGCGCTCTATGTGCTGAACAGTCAGTACCTCTTCAATGAG ATCCAGGTACACCGTCCAATTTGTTTTGAGTGTGAGTCTGAAGACTAGTG TTGATGCTGATCGGAACATTTATCGGGACAACTCACCCGGTGCCGAAATA ACACGACCAAACGTTGTGATGATATACCAATGCTTGCCTGTACGGCATTG TGGTTGTTTCCCTGATGCCTCAAGCGACATGGATCCGGTGCTCGCTTCAA ATCTGAAGGGCTGATGGTCTTGTTGGCGTATGTATGTTGGATTATGTGTC GATGTATGATCTATGTTACATGTATGTTTGTATGAATCTTGGATTATTTA TTTATAAAGCATGTACAGTATGTTTTATTATCTTAAAAATCGGTTCCTCA GTATTAATAGTACTATTTACTCTTTACTGTCTTTCTAATGTATAATGAAT GAATAATGGCACGACAGGCGGAGGTGAATCTGGTGTTTAAGCAACTGCTG TTCGACTTGGAAGAGGAAGTGTTCGGGTACTTCAAGGATTGGGCGGCCTC GACGATGCTGGACAAGATGTACAAAAGAGTCCTCGAGACAAAGAAAGGCT GGGGACACTTCATCCCTGGTCGACGGCGCTATGAGGTACAATACAATGAA GTTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig14098:5336..7941+

>mRNA_H-elongata_contig14098.2840.1 ID=mRNA_H-elongata_contig14098.2840.1|Name=mRNA_H-elongata_contig14098.2840.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig14098:5336..7941+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCGTGCAATTTACGACGAAAATAGCGAACTGAGACAGAGCAGATG
GTTCGTGCAATTTACGACGAAAATAGCGAACTGAGACAGAGCAGTTTTCT
GGGTAAGGAAGATCTCAAGAAGGAGGACTTGGGGCTGCTGAACAAGTACT
ATGTTGATTCCTTTGGGTTCCCCTATCTCCTGGACTTGGCCGGGACCATT
CGCTCCTCAACAGATATGGGCGATCTATGTTTTCTGGGTAAGGAAGATCT
CAAGAAGGAGGACTTGGGGCTGCTGAACAAGTACTATGTTGATTCCTTTG
GGTTCCCCTATCTCCTGGACTTGGCCGGGACCATTCGCTCCTCAACAGAT
ATGGGCGATCTATGGTACCGGGAGTACCACCTGGAACTGACGAAGGAGGT
TCAGTTCCCGATCGAGATGTCGCTACCTTGGATCTTGATCGAGCATATCG
TACCGGGAGTACCACCTGGAACTGACGAAGGAGGTTCAGTTCCCGATCGA
GATGTCGCTACCTTGGATCTTGATCGAGCATATCGGTAAGGGAGGGGGCA
AAGGAGACGGGATGGGACACATCCTCGTGGAGGAGATACTGTGGGCGCTG
GACCTGTACAACGATGCTGCGCATACCGCGCTCTATGTGCTGAACAGTCA
GTACCTCTTCAATGAGATCCAGGGTAAGGGAGGGGGCAAAGGAGACGGGA
TGGGACACATCCTCGTGGAGGAGATACTGTGGGCGCTGGACCTGTACAAC
GATGCTGCGCATACCGCGCTCTATGTGCTGAACAGTCAGTACCTCTTCAA
TGAGATCCAGGCGGAGGTGAATCTGGTGTTTAAGCAACTGCTGTTCGACT
TGGAAGAGGAAGTGTTCGGGTACTTCAAGGATTGGGCGGCCTCGACGATG
CTGGACAAGATGTACAAAAGAGTCCTCGAGACAAAGAAAGGCTGGGGACA
CTTCATCCCTGGTCGACGGCGCTATGAGGTACAATACAATGAAGTTTAAG
CGGAGGTGAATCTGGTGTTTAAGCAACTGCTGTTCGACTTGGAAGAGGAA
GTGTTCGGGTACTTCAAGGATTGGGCGGCCTCGACGATGCTGGACAAGAT
GTACAAAAGAGTCCTCGAGACAAAGAAAGGCTGGGGACACTTCATCCCTG
GTCGACGGCGCTATGAGGTACAATACAATGAAGTTTAA
back to top