prot_H-elongata_contig140749.2825.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig140749.2825.1
Unique Nameprot_H-elongata_contig140749.2825.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length50
Homology
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BLAST of mRNA_H-elongata_contig140749.2825.1 vs. uniprot
Match: D7FMA3_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.460e-18
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0 
Query:    1 CGLGGIVLCCDFCHLVYHPRCLEVTPSLDRLFACAECQEVRKIVQW 46
            CG GGIVLCCDFCHLVYHPRCLEVTP L  LFAC++C+E   I++W
Sbjct:  412 CGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILEW 457
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BLAST of mRNA_H-elongata_contig140749.2825.1 vs. uniprot
Match: A0A6H5KH56_9PHAE (PHD domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH56_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.460e-18
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 0 
Query:    1 CGLGGIVLCCDFCHLVYHPRCLEVTPSLDRLFACAECQEVRKIVQW 46
            CG GGIVLCCDFCHLVYHPRCLEVTP L  LFAC++C+E   I++W
Sbjct:  480 CGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILEW 525
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140749.2825.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMA3_ECTSI2.460e-1873.91PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KH56_9PHAE2.460e-1873.91PHD domain-containing protein (Fragment) n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..45
e-value: 1.9E-7
score: 32.5
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 1..43

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140749contigH-elongata_contig140749:465..614 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140749.2825.1mRNA_H-elongata_contig140749.2825.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig140749 465..614 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig140749.2825.1 ID=prot_H-elongata_contig140749.2825.1|Name=mRNA_H-elongata_contig140749.2825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
CGLGGIVLCCDFCHLVYHPRCLEVTPSLDRLFACAECQEVRKIVQWTVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD