mRNA_H-elongata_contig140749.2825.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig140749.2825.1
Unique NamemRNA_H-elongata_contig140749.2825.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig140749.2825.1 vs. uniprot
Match: D7FMA3_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMA3_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.460e-18
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 CGLGGIVLCCDFCHLVYHPRCLEVTPSLDRLFACAECQEVRKIVQW 138
            CG GGIVLCCDFCHLVYHPRCLEVTP L  LFAC++C+E   I++W
Sbjct:  412 CGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILEW 457
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BLAST of mRNA_H-elongata_contig140749.2825.1 vs. uniprot
Match: A0A6H5KH56_9PHAE (PHD domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH56_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.460e-18
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 CGLGGIVLCCDFCHLVYHPRCLEVTPSLDRLFACAECQEVRKIVQW 138
            CG GGIVLCCDFCHLVYHPRCLEVTP L  LFAC++C+E   I++W
Sbjct:  480 CGEGGIVLCCDFCHLVYHPRCLEVTPGLTSLFACSDCKEEAAILEW 525
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig140749.2825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMA3_ECTSI2.460e-1873.91PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KH56_9PHAE2.460e-1873.91PHD domain-containing protein (Fragment) n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig140749contigH-elongata_contig140749:465..614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929836.495544-CDS-H-elongata_contig140749:464..6141622929836.495544-CDS-H-elongata_contig140749:464..614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140749 465..614 +
1691679177.351421-CDS-H-elongata_contig140749:464..6141691679177.351421-CDS-H-elongata_contig140749:464..614Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig140749 465..614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig140749.2825.1prot_H-elongata_contig140749.2825.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig140749 465..614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig140749.2825.1

>prot_H-elongata_contig140749.2825.1 ID=prot_H-elongata_contig140749.2825.1|Name=mRNA_H-elongata_contig140749.2825.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
CGLGGIVLCCDFCHLVYHPRCLEVTPSLDRLFACAECQEVRKIVQWTVV*
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mRNA from alignment at H-elongata_contig140749:465..614+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig140749.2825.1 ID=mRNA_H-elongata_contig140749.2825.1|Name=mRNA_H-elongata_contig140749.2825.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig140749:465..614+ (Himanthalia elongata Himel1 dioecious)
TGCGGATTGGGGGGTATCGTGTTGTGCTGTGACTTCTGCCACCTGGTGTA
TCACCCAAGGTGCCTGGAAGTGACCCCGAGCCTAGACCGACTCTTCGCCT
GCGCGGAGTGCCAAGAGGTGAGGAAAATTGTACAATGGACGGTTGTATGA
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Coding sequence (CDS) from alignment at H-elongata_contig140749:465..614+

>mRNA_H-elongata_contig140749.2825.1 ID=mRNA_H-elongata_contig140749.2825.1|Name=mRNA_H-elongata_contig140749.2825.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig140749:465..614+ (Himanthalia elongata Himel1 dioecious)
TGCGGATTGGGGGGTATCGTGTTGTGCTGTGACTTCTGCCACCTGGTGTA
TCACCCAAGGTGCCTGGAAGTGACCCCGAGCCTAGACCGACTCTTCGCCT
GCGCGGAGTGCCAAGAGGTGAGGAAAATTGTACAATGGACGGTTGTATGA
TGCGGATTGGGGGGTATCGTGTTGTGCTGTGACTTCTGCCACCTGGTGTA
TCACCCAAGGTGCCTGGAAGTGACCCCGAGCCTAGACCGACTCTTCGCCT
GCGCGGAGTGCCAAGAGGTGAGGAAAATTGTACAATGGACGGTTGTATGA
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