mRNA_H-elongata_contig103344.276.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103344.276.1
Unique NamemRNA_H-elongata_contig103344.276.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: D7G6Y8_ECTSI (UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Y8_ECTSI)

HSP 1 Score: 340 bits (871), Expect = 2.420e-104
Identity = 169/208 (81.25%), Postives = 188/208 (90.38%), Query Frame = 1
Query:   19 QLLDIKDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLMAATTALIQRTDRADFT-EAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMPEAAGK 639
            ++LDIKDWTDALKGGLPPVKLPK+VFGTAGCYSFMEEKLRP LEYEDLKAGVFQDFRE GNALAFL+CLSEA+AG+DCLKFV TVP+MGL SSKKWDPKRTRL+AATTALI+    ADFT EA ASL GLE AVLEGQ ACKGL+T ASIFRHTLGEL  ALD+L LR+ WAG +P+NGV+DVE+S++FSRLFSALNFLFCMPEA G+
Sbjct: 1023 KMLDIKDWTDALKGGLPPVKLPKYVFGTAGCYSFMEEKLRPFLEYEDLKAGVFQDFREFGNALAFLQCLSEASAGLDCLKFVQTVPVMGLSSSKKWDPKRTRLVAATTALIR---GADFTGEAGASLSGLEDAVLEGQAACKGLSTSASIFRHTLGELSTALDVLRLREAWAGAQPANGVLDVEESVSFSRLFSALNFLFCMPEAKGE 1227          
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A6H5KQX8_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX8_9PHAE)

HSP 1 Score: 331 bits (849), Expect = 2.260e-101
Identity = 165/208 (79.33%), Postives = 183/208 (87.98%), Query Frame = 1
Query:   19 QLLDIKDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLMAATTALIQRTDRADFT-EAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMPEAAGK 639
            ++LDIKDWTDALKGGLPPVKLPK+VFGTAGCYSFMEEKLRP LEYEDLKAGVFQDFRE GNALAFL+CLSEA+AG+DCLKFV TVP+MGL SSKKWDPKRTRL+AATTAL++    AD T EA ASL GLE AVLEGQ ACK L T ASIFRHTLGEL  ALD+L LR+ W G +P NGV+DVE+S++FSRLFSALNFLFCMPEA G+
Sbjct:  729 KMLDIKDWTDALKGGLPPVKLPKYVFGTAGCYSFMEEKLRPFLEYEDLKAGVFQDFREFGNALAFLQCLSEASAGLDCLKFVQTVPVMGLSSSKKWDPKRTRLVAATTALVR---GADLTGEAGASLSGLEDAVLEGQAACKDLATSASIFRHTLGELSTALDVLRLREAWVGAQPVNGVLDVEESVSFSRLFSALNFLFCMPEAKGE 933          
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A7S1UBW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBW1_9STRA)

HSP 1 Score: 149 bits (377), Expect = 3.750e-38
Identity = 91/218 (41.74%), Postives = 117/218 (53.67%), Query Frame = 1
Query:   10 NLFQLLD-IKDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRA-----------SIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMPE 627
            NL  LLD IK + DALK GLPP KLPKFV+G A CY F E KL+P LEYED+K  VFQ  RE+GN +AFL+ LSE     + LKFV     +G+   ++          AT  +        F +A  S+V     V    E   G   RA           S+F+ T+  ++  LD   +R  W    P+NGVM+VE S  F RL+SALNFL+C+ E
Sbjct:  377 NLDHLLDSIKSYMDALKDGLPPCKLPKFVYGVAACYGFFEGKLKPFLEYEDMKPEVFQTLREIGNTVAFLKDLSEVIEATEGLKFVQAASFLGVSPEEQSFRSGAE---ATPYMRTMVGFCGFAQANPSVVKAPLVV----ETMLGSARRAVGMHEYLGRSRSLFKATMRAVNDMLDQKGMRQAWTNSSPANGVMEVEASNEFHRLWSALNFLYCISE 587          
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A835YVZ9_9STRA (Cytoplasmic fragile-X interacting family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVZ9_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.070e-37
Identity = 87/216 (40.28%), Postives = 121/216 (56.02%), Query Frame = 1
Query:    1 MRFNLFQLLDIKDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLMAA----TTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMA----FSRLFSALNFLFCMP 624
            M++   +L D+ +W  AL  GLP + LP    G AG Y+  E +L+P+LEY DL+ GVFQD RE+GNALAFL  L +     DCL FVH +PI+G+P+S+ W+  RTRLM A    T A+      +   ++ A+L    +A   GQEA        S+F   L  LD A+    +R+ W G  P +G+ +  D       F RL+SAL+F FC P
Sbjct: 1077 MQYLESKLDDLLEWARALTPGLPSLALPSLSMGLAGAYAMFEVQLQPLLEYPDLRNGVFQDLREMGNALAFLFSLGKLMQVDDCLTFVHALPIIGVPTSRTWEGDRTRLMTAIGGITAAITGSGCPSGVAQSAATLTDSAKA---GQEAAAACALPQSLFGTALQRLDVAISASGIREEWQGG-PLDGLCEPADGAPPPPHFYRLWSALHFAFCQP 1288          
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: F0YL26_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL26_AURAN)

HSP 1 Score: 105 bits (262), Expect = 1.350e-22
Identity = 72/207 (34.78%), Postives = 106/207 (51.21%), Query Frame = 1
Query:   10 NLFQLLDI-KDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLM----AATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLF 615
            NL + L+I K + DA+  GLPP KLPK ++G AGCY   +  L+PIL Y DLK  VFQ F+E+GNAL F+  +S+    +D  + +H    + L  S K  P  + L     + T A+ +   R          + +    ++G    +    R ++F   L  L   +     R  W    PSNGV+D+E + +F RL+SAL FLF
Sbjct:  925 NLQERLEISKAYLDAITKGLPPCKLPKAMYGLAGCYGVFDALLKPILAYVDLKPEVFQAFKEVGNALFFIRDMSDVLDCIDLARGLHQFSWIPLADSYKPVPALSHLAIECHSLTCAMPEEQMRCVIPRGAVPELAVIAERIQGDMLSEA-DQRITLFWGALTHLSLLIQPF--RPGWTELLPSNGVLDLEATGSFHRLWSALGFLF 1128          
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: D3BK91_POLPP (Component of SCAR regulatory complex n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BK91_POLPP)

HSP 1 Score: 100 bits (248), Expect = 9.980e-21
Identity = 65/205 (31.71%), Postives = 99/205 (48.29%), Query Frame = 1
Query:   46 DALKGGLPPV-KLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGL-PSSKKWDPKR----------TRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMP 624
            + ++ G+PP  KLP + +GT G Y + + KL+ I  Y DL+  V Q FRELGN++ F+  L +A    D L F  + P +G  P S   DP            ++L      + Q+ D     E    +VG         +  +      S+F+  L  +   L+  N+R  W+G  P NGV++V+ S  F RL+SAL F+ C P
Sbjct:  936 ELIQSGMPPSQKLPIYDYGTEGGYGYFQLKLKDIYTYPDLRPEVIQCFRELGNSIVFMNLLDQALVQSDALIFTKSAPFLGFTPESWYQDPTGEDPTLQSPLYSQLQKLAQLIEQKPDVTKVPEYFNEIVG---NAWRADKFYRPADNNTSLFKSVLQRISQILN--NVRSEWSGTAPDNGVINVDSSTEFYRLWSALQFVTCWP 1135          
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A151ZAX9_9MYCE (Component of SCAR regulatory complex n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZAX9_9MYCE)

HSP 1 Score: 99.4 bits (246), Expect = 1.840e-20
Identity = 71/205 (34.63%), Postives = 101/205 (49.27%), Query Frame = 1
Query:   46 DALKGGLPP-VKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKW----DPKRTRLMAATTALIQRTDRADFTEAE----ASLVGLERAVLEGQEACKGLTTR---ASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMP 624
            + L  G+PP  KLP + +GT G Y + + KLR I  Y DL+  V Q FRELGN L  +  L +A   VD   FV + P +G+ + + W    + +   L +   A IQ+   A F E+      S   L   V     A K        +S+F+  L      L+++  R  WAG  P NGV+ ++ S  FSRL+SAL F+ C P
Sbjct:  939 ELLANGMPPSTKLPIYDYGTEGGYGYFQLKLRDIYIYPDLRPEVLQCFRELGNTLILMNLLDQAVVQVDSFNFVKSAPFLGI-TPESWFQDQNGEDPTLQSPLYAQIQKL--AQFLESNPQGSTSNQVLNDIVANAWRADKFYRPNELNSSLFKSVLQRFSQLLNVV--RGEWAGQAPDNGVICIDSSTEFSRLWSALQFVICWP 1138          
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A0D2WGK4_CAPO3 (Cytoplasmic FMR1-interacting protein 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WGK4_CAPO3)

HSP 1 Score: 99.0 bits (245), Expect = 2.500e-20
Identity = 64/198 (32.32%), Postives = 96/198 (48.48%), Query Frame = 1
Query:   40 WTDALKGGLP-PVKLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSKKWDPKRTRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMPEA 630
            + ++   G+P  +K P F +GT G + + +  L+PIL Y DLK  VF  FRELGN+L F   L ++    D   +V ++P   +  S    P  T  +  T      T          SL G  RA    +     L  R S+F   L   DA L    +R+ W G RP+NG+++++++  F RL+S L F +C P A
Sbjct:  944 YVESFMRGIPVDMKTPLFQYGTLGTFQYFQAHLKPILAYRDLKTEVFHVFRELGNSLIFARLLDQSMLQRDLFTYVQSLPFYTIDRSGVTVPSTTGQVDPTAFFKFVTTHLQGQPFSESLGG--RAEQASKLNAPSLA-RKSLFVRVLERFDALL--APVREKWRGSRPTNGILNIDETSEFYRLWSVLQFAYCTPGA 1136          
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A8J9XX57_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9XX57_BRAAE)

HSP 1 Score: 97.4 bits (241), Expect = 8.530e-20
Identity = 60/206 (29.13%), Postives = 102/206 (49.51%), Query Frame = 1
Query:   28 DIKDWTDALKGGLPPV-KLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGL------PSSKKWDPKRTRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMP 624
            ++  +T  L   +P + KLP++ +G+ G  +F   +L  IL+Y D K  +F +FRE GN + F   + +A +  +    +   P   +         +K + K+ RL A   AL    +      A+ +++  E  +L  +  C GL    SIF   L  L + LD       W G  P+NGVM++++ + F RL+SAL F++C+P
Sbjct:  966 NLLQFTKTLMSAMPKICKLPRYDYGSPGVLAFYHAQLNDILQYPDAKTELFHNFREFGNTIIFCLLMEQALSQEEVCDLLQAAPFQNILPRPYCKEGEKLEVKQKRLEAKYAALQIVPNIEKLGTAKQAMISKEGDLLTRERLCCGL----SIFEVVLNRLKSFLD----DPVWVGPPPANGVMNIDECVEFHRLWSALQFVYCVP 1163          
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Match: A0A7G3AFU7_LUTLO (Putative cytoplasmic fmr1-interacting protein n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A7G3AFU7_LUTLO)

HSP 1 Score: 97.1 bits (240), Expect = 1.120e-19
Identity = 61/208 (29.33%), Postives = 105/208 (50.48%), Query Frame = 1
Query:   28 DIKDWTDALKGGLPPV-KLPKFVFGTAGCYSFMEEKLRPILEYEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGL------PSSKKWDPKRTRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLTTRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSALNFLFCMPEA 630
            ++  +T  L   +P   KLP+F +G+ G  S+    L  I++Y D K  +FQ FRE GN++ F   + +A +  +    +H  P   +         +K + K+ RL +  ++L   ++   F  A+ +++  E  +L  +  C GL    SIF   LG + + +D       W G  P NGVM++++   F RL+SAL F++C+P A
Sbjct:  705 NLLQFTKTLMSAMPKTCKLPRFDYGSPGVLSYYHAHLIDIVQYPDAKTELFQLFREFGNSIIFCLLIEQALSQEEVCDLLHAAPFQNILPRPYCKDGEKPETKQKRLESKYSSLQIVSNVEKFGTAKQAMIAREGDLLTRERLCCGL----SIFEVILGRVKSYMD----DPVWMGPPPINGVMNIDECSEFHRLWSALQFVYCIPVA 904          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103344.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Y8_ECTSI2.420e-10481.25UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KQX8_9PHAE2.260e-10179.33UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1UBW1_9STRA3.750e-3841.74Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A835YVZ9_9STRA1.070e-3740.28Cytoplasmic fragile-X interacting family-domain-co... [more]
F0YL26_AURAN1.350e-2234.78Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
D3BK91_POLPP9.980e-2131.71Component of SCAR regulatory complex n=1 Tax=Polys... [more]
A0A151ZAX9_9MYCE1.840e-2034.63Component of SCAR regulatory complex n=1 Tax=Tiegh... [more]
A0A0D2WGK4_CAPO32.500e-2032.32Cytoplasmic FMR1-interacting protein 1 n=1 Tax=Cap... [more]
A0A8J9XX57_BRAAE8.530e-2029.13Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
A0A7G3AFU7_LUTLO1.120e-1929.33Putative cytoplasmic fmr1-interacting protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103344contigH-elongata_contig103344:304..2063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score341.7
Seed ortholog evalue2.5e-91
Seed eggNOG ortholog2880.D7G6Y8
KEGG koko:K05749
KEGG Pathwayko03013,ko04810,map03013,map04810
GOsGO:0000902,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005911,GO:0006928,GO:0008064,GO:0008150,GO:0009653,GO:0009987,GO:0010639,GO:0016043,GO:0030054,GO:0030175,GO:0030832,GO:0030834,GO:0030835,GO:0031143,GO:0031209,GO:0031252,GO:0032433,GO:0032502,GO:0032535,GO:0032956,GO:0032970,GO:0032989,GO:0032991,GO:0033043,GO:0040011,GO:0042995,GO:0043242,GO:0043244,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051179,GO:0051493,GO:0051494,GO:0051674,GO:0065007,GO:0065008,GO:0071840,GO:0090066,GO:0098858,GO:0110053,GO:0120025,GO:0120038,GO:1901879,GO:1901880,GO:1902903,GO:1902904
EggNOG free text desc.positive regulation of neurotrophin TRK receptor signaling pathway
EggNOG OGsKOG3534@1,KOG3534@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Hectar predicted targeting categoryother localisation
Exons4
Model size640
Cds size639
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103344.276.1prot_H-elongata_contig103344.276.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103344 304..2063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929568.482617-CDS-H-elongata_contig103344:303..4831622929568.482617-CDS-H-elongata_contig103344:303..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103344 304..483 +
1691679074.0654671-CDS-H-elongata_contig103344:303..4831691679074.0654671-CDS-H-elongata_contig103344:303..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103344 304..483 +
1622929568.5086415-CDS-H-elongata_contig103344:1035..12431622929568.5086415-CDS-H-elongata_contig103344:1035..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103344 1036..1243 +
1691679074.0746782-CDS-H-elongata_contig103344:1035..12431691679074.0746782-CDS-H-elongata_contig103344:1035..1243Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103344 1036..1243 +
1622929568.5298042-CDS-H-elongata_contig103344:1485..16491622929568.5298042-CDS-H-elongata_contig103344:1485..1649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103344 1486..1649 +
1691679074.0819504-CDS-H-elongata_contig103344:1485..16491691679074.0819504-CDS-H-elongata_contig103344:1485..1649Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103344 1486..1649 +
1622929568.547522-CDS-H-elongata_contig103344:1976..20631622929568.547522-CDS-H-elongata_contig103344:1976..2063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103344 1977..2063 +
1691679074.089144-CDS-H-elongata_contig103344:1976..20631691679074.089144-CDS-H-elongata_contig103344:1976..2063Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103344 1977..2063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103344.276.1

>prot_H-elongata_contig103344.276.1 ID=prot_H-elongata_contig103344.276.1|Name=mRNA_H-elongata_contig103344.276.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=213bp
MRFNLFQLLDIKDWTDALKGGLPPVKLPKFVFGTAGCYSFMEEKLRPILE
YEDLKAGVFQDFRELGNALAFLECLSEAAAGVDCLKFVHTVPIMGLPSSK
KWDPKRTRLMAATTALIQRTDRADFTEAEASLVGLERAVLEGQEACKGLT
TRASIFRHTLGELDAALDMLNLRDTWAGDRPSNGVMDVEDSMAFSRLFSA
LNFLFCMPEAAGK
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mRNA from alignment at H-elongata_contig103344:304..2063+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103344.276.1 ID=mRNA_H-elongata_contig103344.276.1|Name=mRNA_H-elongata_contig103344.276.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1760bp|location=Sequence derived from alignment at H-elongata_contig103344:304..2063+ (Himanthalia elongata Himel1 dioecious)
ATGCGTTTCAATCTTTTTCAGCTGTTAGATATCAAAGACTGGACCGACGC CTTAAAGGGGGGCCTACCGCCGGTGAAGCTGCCCAAATTCGTCTTTGGTA CGGCTGGTTGCTACTCCTTCATGGAAGAAAAGCTAAGACCCATCTTGGAG TACGAGGATCTGAAGGCTGGCGTTTTCCAGGTGCTGTCTGTGCTCATTGC CTTGTCATTACCATTACTGTTAATACTATTATCACTATTATTACTATTAA TACTAATCCCATTACTGTTATTACTAATAGTAATTATAGTAACTACTATC ACTACCACTATTGTTATTACTATTGCTATTGCTATTTCCATTGCCATTAC CATTGCCAACTGTACAACGTGGCGTTAGATGAACTCATTGGTGGCTAACT CCCTAGAGCCTCGAAGAACCGACATTGACTCGACTATTATTAGGTTATTA GCTTAGACCAGGGGCAACTATTATTAGCTTAGACACCCTTCTAATTGTCT GTTAATAGCTGTCTTGTGTAGTGAGGCACTATTTGTAGCAGTAGATCTGT CTCGTTTCTCTTCTGTCTAATCGATGACTGCCAACACCTCACAGCAACGC GTTTGGTCGTACGGTTATTTCGGGGCTGTCCGGCTATAGCGCCTAAGCGG TATTTATAAGTCTCCCCCAACGGTACGATGAGCCCTCGCGAATGCCATGC TCCAAAGTTCTACCGGTCGCGTCCCGTATCAGGATTTCCGAGAGCTGGGG AACGCGTTGGCATTCTTGGAGTGCCTTAGCGAGGCTGCGGCGGGCGTGGA TTGCCTCAAGTTCGTTCACACAGTGCCTATCATGGGGCTTCCGTCCTCCA AGAAGTGGGACCCTAAGCGGACGAGACTGATGGCTGCCACGACCGCGTTG ATTCAAAGGACAGACAGGGCAGACTTCACAGAGGCGGAAGGTAACATCAC TAATCTTATGGAGCATTTTCGCCCTCGACGTTGATCGGTGATCGGTGATC GGTCGCGACATGGCAATGAGGAGGTCGCTACAATAGAAGATAATAAGTTG CTATTAATAGCGCAGCAAACGAGCAAGCGAGAGCTTTTGTCGCCCGGGTA GTATAGTATACGATAATATACTATACTATACTATACTATATTATATTATA GTGTACTCTTTACGACGCGGTGGTGTGTTCAGCGAGCTTGGTGGGGCTTG AACGAGCGGTGTTGGAGGGCCAAGAGGCGTGCAAGGGGCTGACCACGAGA GCCAGCATTTTTCGGCACACATTGGGCGAGCTGGATGCCGCGCTCGATAT GCTGAACCTCCGAGACACCTGGGCGGGCGATCGTCCTTCCAACGGGGTAA GAGTGACCACCATTGAATGACCACCATCGCCACCACGGCTAATAACTAAT CACCATCACTCGTCGTGTCCTGTCTCTTGATCGCCTGGCCAAGGTCGGAC CGTCTGTTTTCATTTTTCCCTTCCGAGGGTAATATACTGTAATATACCGT GTAGCGGAGTAGAACAGTAAGAATGGCTTGACGGTGAATGGATGTGTTGT ATTGTAGTGTATTTTGGGGTGGTGTAATGTACTCGTTTAGTAATAATTAC TGTATAAAATTATGATCATATATGGTACTTGAAAAAGTATTACTAATACT AATACTAATACTGTGCTATGTAGGTGATGGATGTGGAAGATTCCATGGCG TTCAGCAGGCTCTTCAGCGCACTCAACTTCCTCTTTTGCATGCCAGAGGC TGCCGGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig103344:304..2063+

>mRNA_H-elongata_contig103344.276.1 ID=mRNA_H-elongata_contig103344.276.1|Name=mRNA_H-elongata_contig103344.276.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1278bp|location=Sequence derived from alignment at H-elongata_contig103344:304..2063+ (Himanthalia elongata Himel1 dioecious)
ATGCGTTTCAATCTTTTTCAGCTGTTAGATATCAAAGACTGGACCGACGC
CTTAAAGGGGGGCCTACCGCCGGTGAAGCTGCCCAAATTCGTCTTTGGTA
CGGCTGGTTGCTACTCCTTCATGGAAGAAAAGCTAAGACCCATCTTGGAG
TACGAGGATCTGAAGGCTGGCGTTTTCCAGATGCGTTTCAATCTTTTTCA
GCTGTTAGATATCAAAGACTGGACCGACGCCTTAAAGGGGGGCCTACCGC
CGGTGAAGCTGCCCAAATTCGTCTTTGGTACGGCTGGTTGCTACTCCTTC
ATGGAAGAAAAGCTAAGACCCATCTTGGAGTACGAGGATCTGAAGGCTGG
CGTTTTCCAGGATTTCCGAGAGCTGGGGAACGCGTTGGCATTCTTGGAGT
GCCTTAGCGAGGCTGCGGCGGGCGTGGATTGCCTCAAGTTCGTTCACACA
GTGCCTATCATGGGGCTTCCGTCCTCCAAGAAGTGGGACCCTAAGCGGAC
GAGACTGATGGCTGCCACGACCGCGTTGATTCAAAGGACAGACAGGGCAG
ACTTCACAGAGGCGGAAGGATTTCCGAGAGCTGGGGAACGCGTTGGCATT
CTTGGAGTGCCTTAGCGAGGCTGCGGCGGGCGTGGATTGCCTCAAGTTCG
TTCACACAGTGCCTATCATGGGGCTTCCGTCCTCCAAGAAGTGGGACCCT
AAGCGGACGAGACTGATGGCTGCCACGACCGCGTTGATTCAAAGGACAGA
CAGGGCAGACTTCACAGAGGCGGAAGCGAGCTTGGTGGGGCTTGAACGAG
CGGTGTTGGAGGGCCAAGAGGCGTGCAAGGGGCTGACCACGAGAGCCAGC
ATTTTTCGGCACACATTGGGCGAGCTGGATGCCGCGCTCGATATGCTGAA
CCTCCGAGACACCTGGGCGGGCGATCGTCCTTCCAACGGGCGAGCTTGGT
GGGGCTTGAACGAGCGGTGTTGGAGGGCCAAGAGGCGTGCAAGGGGCTGA
CCACGAGAGCCAGCATTTTTCGGCACACATTGGGCGAGCTGGATGCCGCG
CTCGATATGCTGAACCTCCGAGACACCTGGGCGGGCGATCGTCCTTCCAA
CGGGGTGATGGATGTGGAAGATTCCATGGCGTTCAGCAGGCTCTTCAGCG
CACTCAACTTCCTCTTTTGCATGCCAGAGGCTGCCGGCAAGGTGATGGAT
GTGGAAGATTCCATGGCGTTCAGCAGGCTCTTCAGCGCACTCAACTTCCT
CTTTTGCATGCCAGAGGCTGCCGGCAAG
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