mRNA_H-elongata_contig139147.2724.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: D7G9E2_ECTSI (Possible vitamin K epoxide reductase, plastid protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E2_ECTSI) HSP 1 Score: 131 bits (330), Expect = 1.100e-35 Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 1
Query: 4 WPSINRKAIGVMASAGALESAFLTYQKIRPGGLDLLCGAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPLF 240
WP+INRKAIG +AS GALESA+LTYQKI P GLDLLCGA GGC DVL+GPYSNVLG+PLSA G LGYL AGLA++PLF
Sbjct: 21 WPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLF 99
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A6H5K243_9PHAE (VKc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K243_9PHAE) HSP 1 Score: 131 bits (330), Expect = 5.750e-35 Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 1
Query: 4 WPSINRKAIGVMASAGALESAFLTYQKIRPGGLDLLCGAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPLF 240
WP+INRKAIG +AS GALESA+LTYQKI P GLDLLCGA GGC DVL+GPYSNVLG+PLSA G LGYL AGLA++PLF
Sbjct: 110 WPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLF 188
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A0M0JS95_9EUKA (Vitamin k epoxide reductase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JS95_9EUKA) HSP 1 Score: 77.8 bits (190), Expect = 3.430e-15 Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 1
Query: 16 NRKAIGVMASAGALESAFLTYQKIRPGG-LDLLCGAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPLFL 243
R AI V+A+AGA E+ LT +K+ P G LD C GGGCADVLSG +S V G+PLSA G L Y VA LA +PL L
Sbjct: 16 GRVAIAVLATAGAAETGTLTVEKLWPSGALDGFCLPGGGCADVLSGSWSTVFGVPLSAFGLLAYGAVAALAALPLLL 92
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A7S0J935_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J935_9EUKA) HSP 1 Score: 77.0 bits (188), Expect = 5.340e-15 Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1
Query: 19 RKAIGVMASAGALESAFLTYQKIRPGG--LDLLCGAGGG-CADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPLF 240
R A+G +A AG +E+A +TY K+ G ++ LC GGG CADVL+GP+S VLG+PLSALG LGY A LA PLF
Sbjct: 6 RAAVGGLAGAGVVETALITYDKLWGDGSAVESLCAVGGGGCADVLNGPWSTVLGLPLSALGLLGYSAAALLAAAPLF 82
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A7S0LHA4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHA4_9EUKA) HSP 1 Score: 70.9 bits (172), Expect = 1.290e-12 Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 19 RKAIGVMASAGALESAFLTYQKIRPGG--LDLLC-GAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPLFL 243
R ++ ++ASAG E+ F+T+ K+ GG ++ LC AGGGCADVL+GP+S V G+PLS +G Y A LA PL L
Sbjct: 55 RASLALLASAGMAETGFITFDKLWGGGAAVEALCTAAGGGCADVLNGPWSTVFGVPLSVIGLFAYSTAAVLAAAPLLL 132
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: B7G622_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G622_PHATC) HSP 1 Score: 68.9 bits (167), Expect = 7.050e-12 Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 1
Query: 4 WPSINRKAIGVMASAGALESAFLTYQKIRPGGLDLLCGAGGGCADVLSGPYSNVLG--IPLSALGALGYLLVAGLALMPL 237
W R+ +G++ASAG +E+A+LT K+ +D+LCGA GGC+ +L+GPY+ + G IPLS LG + Y VA LA+ P+
Sbjct: 81 WNPKLRRVMGLVASAGMIETAYLTLTKLTDK-VDILCGADGGCSSILNGPYAFIPGTNIPLSLLGFVAYATVAFLAVEPI 159
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A7S2K3D4_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3D4_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.750e-10 Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1
Query: 1 MWPSINRKAIGVMASAGALESAFLTYQKIR--PGGLDLLCGAGG----GCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPL 237
+W RK + +A+ GA E+AFLT K G ++ +C G GC+DVLS PY+N+ GIPL+A G Y VA L+++PL
Sbjct: 70 VWNPSARKTLAALATIGAAETAFLTGVKTLGGEGAINSICSVSGNALGGCSDVLSSPYANIAGIPLTAFGFAAYTTVAILSILPL 154
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A0C1VDZ7_9CYAN (Membrane protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A0C1VDZ7_9CYAN) HSP 1 Score: 60.5 bits (145), Expect = 6.460e-9 Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 19 RKAIGVMASAGALESAFLTYQKIRPGGLDLLCGAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPL 237
R IG +A GA +A+LT K+ G D C GG C VLS PY+ V G+PL+ G LGYL +AG+AL PL
Sbjct: 16 RWIIGAIALMGACGTAYLTVVKVMGG--DAACPTGG-CDRVLSSPYAEVFGLPLTLFGFLGYLSMAGMALAPL 85
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: R7Q9N1_CHOCR (VKc domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9N1_CHOCR) HSP 1 Score: 60.1 bits (144), Expect = 1.050e-8 Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 19 RKAIGVMASAGALESAFLTYQKI--RPGGLDLLCGAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPL 237
RK + ++ GA E+++LT+ KI PG + C A GC DVLSGP+S+ LGIPL+ LGAL Y + A LA+ PL
Sbjct: 144 RKILTAVSMVGAAETSYLTFNKIFSSPGAI---C-ATQGCLDVLSGPFSSFLGIPLTLLGALAYGVFAYLAVWPL 214
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A0U9HKS0_KLENI (VKc domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKS0_KLENI) HSP 1 Score: 59.7 bits (143), Expect = 1.440e-8 Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1
Query: 28 IGVMASAGALESAFLTYQKIRPGGLDLLCGAGG--GCADVLSGPYSNVLGIPLSALGALGYLLV 213
IG +AS GALE+A+LTY+K+ G + GAGG GC+DVL Y + G+PLS G Y LV
Sbjct: 138 IGGLASIGALETAYLTYEKLTGGPVACGLGAGGVGGCSDVLDSEYGTLFGVPLSLFGLAAYSLV 201 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig139147.2724.1 >prot_H-elongata_contig139147.2724.1 ID=prot_H-elongata_contig139147.2724.1|Name=mRNA_H-elongata_contig139147.2724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp MWPSINRKAIGVMASAGALESAFLTYQKIRPGGLDLLCGAGGGCADVLSGback to top mRNA from alignment at H-elongata_contig139147:746..1693+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig139147.2724.1 ID=mRNA_H-elongata_contig139147.2724.1|Name=mRNA_H-elongata_contig139147.2724.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=948bp|location=Sequence derived from alignment at H-elongata_contig139147:746..1693+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig139147:746..1693+ >mRNA_H-elongata_contig139147.2724.1 ID=mRNA_H-elongata_contig139147.2724.1|Name=mRNA_H-elongata_contig139147.2724.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig139147:746..1693+ (Himanthalia elongata Himel1 dioecious)back to top |