mRNA_H-elongata_contig139147.2724.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139147.2724.1
Unique NamemRNA_H-elongata_contig139147.2724.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: D7G9E2_ECTSI (Possible vitamin K epoxide reductase, plastid protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E2_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.100e-35
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    4 WPSINRKAIGVMASAGALESAFLTYQKIRPGGLDLLCGAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPLF 240
            WP+INRKAIG +AS GALESA+LTYQKI P GLDLLCGA GGC DVL+GPYSNVLG+PLSA G LGYL  AGLA++PLF
Sbjct:   21 WPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLF 99          
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A6H5K243_9PHAE (VKc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K243_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 5.750e-35
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    4 WPSINRKAIGVMASAGALESAFLTYQKIRPGGLDLLCGAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPLF 240
            WP+INRKAIG +AS GALESA+LTYQKI P GLDLLCGA GGC DVL+GPYSNVLG+PLSA G LGYL  AGLA++PLF
Sbjct:  110 WPAINRKAIGALASVGALESAYLTYQKIHPAGLDLLCGASGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLF 188          
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A0M0JS95_9EUKA (Vitamin k epoxide reductase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JS95_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 3.430e-15
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   16 NRKAIGVMASAGALESAFLTYQKIRPGG-LDLLCGAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPLFL 243
             R AI V+A+AGA E+  LT +K+ P G LD  C  GGGCADVLSG +S V G+PLSA G L Y  VA LA +PL L
Sbjct:   16 GRVAIAVLATAGAAETGTLTVEKLWPSGALDGFCLPGGGCADVLSGSWSTVFGVPLSAFGLLAYGAVAALAALPLLL 92          
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A7S0J935_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J935_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 5.340e-15
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   19 RKAIGVMASAGALESAFLTYQKIRPGG--LDLLCGAGGG-CADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPLF 240
            R A+G +A AG +E+A +TY K+   G  ++ LC  GGG CADVL+GP+S VLG+PLSALG LGY   A LA  PLF
Sbjct:    6 RAAVGGLAGAGVVETALITYDKLWGDGSAVESLCAVGGGGCADVLNGPWSTVLGLPLSALGLLGYSAAALLAAAPLF 82          
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A7S0LHA4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHA4_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 1.290e-12
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   19 RKAIGVMASAGALESAFLTYQKIRPGG--LDLLC-GAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPLFL 243
            R ++ ++ASAG  E+ F+T+ K+  GG  ++ LC  AGGGCADVL+GP+S V G+PLS +G   Y   A LA  PL L
Sbjct:   55 RASLALLASAGMAETGFITFDKLWGGGAAVEALCTAAGGGCADVLNGPWSTVFGVPLSVIGLFAYSTAAVLAAAPLLL 132          
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: B7G622_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G622_PHATC)

HSP 1 Score: 68.9 bits (167), Expect = 7.050e-12
Identity = 37/80 (46.25%), Postives = 55/80 (68.75%), Query Frame = 1
Query:    4 WPSINRKAIGVMASAGALESAFLTYQKIRPGGLDLLCGAGGGCADVLSGPYSNVLG--IPLSALGALGYLLVAGLALMPL 237
            W    R+ +G++ASAG +E+A+LT  K+    +D+LCGA GGC+ +L+GPY+ + G  IPLS LG + Y  VA LA+ P+
Sbjct:   81 WNPKLRRVMGLVASAGMIETAYLTLTKLTDK-VDILCGADGGCSSILNGPYAFIPGTNIPLSLLGFVAYATVAFLAVEPI 159          
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A7S2K3D4_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3D4_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.750e-10
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 MWPSINRKAIGVMASAGALESAFLTYQKIR--PGGLDLLCGAGG----GCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPL 237
            +W    RK +  +A+ GA E+AFLT  K     G ++ +C   G    GC+DVLS PY+N+ GIPL+A G   Y  VA L+++PL
Sbjct:   70 VWNPSARKTLAALATIGAAETAFLTGVKTLGGEGAINSICSVSGNALGGCSDVLSSPYANIAGIPLTAFGFAAYTTVAILSILPL 154          
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A0C1VDZ7_9CYAN (Membrane protein n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A0C1VDZ7_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 6.460e-9
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 1
Query:   19 RKAIGVMASAGALESAFLTYQKIRPGGLDLLCGAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPL 237
            R  IG +A  GA  +A+LT  K+  G  D  C  GG C  VLS PY+ V G+PL+  G LGYL +AG+AL PL
Sbjct:   16 RWIIGAIALMGACGTAYLTVVKVMGG--DAACPTGG-CDRVLSSPYAEVFGLPLTLFGFLGYLSMAGMALAPL 85          
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: R7Q9N1_CHOCR (VKc domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9N1_CHOCR)

HSP 1 Score: 60.1 bits (144), Expect = 1.050e-8
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:   19 RKAIGVMASAGALESAFLTYQKI--RPGGLDLLCGAGGGCADVLSGPYSNVLGIPLSALGALGYLLVAGLALMPL 237
            RK +  ++  GA E+++LT+ KI   PG +   C A  GC DVLSGP+S+ LGIPL+ LGAL Y + A LA+ PL
Sbjct:  144 RKILTAVSMVGAAETSYLTFNKIFSSPGAI---C-ATQGCLDVLSGPFSSFLGIPLTLLGALAYGVFAYLAVWPL 214          
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Match: A0A0U9HKS0_KLENI (VKc domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKS0_KLENI)

HSP 1 Score: 59.7 bits (143), Expect = 1.440e-8
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   28 IGVMASAGALESAFLTYQKIRPGGLDLLCGAGG--GCADVLSGPYSNVLGIPLSALGALGYLLV 213
            IG +AS GALE+A+LTY+K+  G +    GAGG  GC+DVL   Y  + G+PLS  G   Y LV
Sbjct:  138 IGGLASIGALETAYLTYEKLTGGPVACGLGAGGVGGCSDVLDSEYGTLFGVPLSLFGLAAYSLV 201          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139147.2724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E2_ECTSI1.100e-3578.48Possible vitamin K epoxide reductase, plastid prot... [more]
A0A6H5K243_9PHAE5.750e-3578.48VKc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A0M0JS95_9EUKA3.430e-1557.14Vitamin k epoxide reductase n=1 Tax=Chrysochromuli... [more]
A0A7S0J935_9EUKA5.340e-1555.84Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0LHA4_9EUKA1.290e-1248.72Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
B7G622_PHATC7.050e-1246.25Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2K3D4_9STRA1.750e-1042.35Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A0C1VDZ7_9CYAN6.460e-949.32Membrane protein n=3 Tax=Cyanobacteria TaxID=1117 ... [more]
R7Q9N1_CHOCR1.050e-849.33VKc domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A0U9HKS0_KLENI1.440e-850.00VKc domain-containing protein n=1 Tax=Klebsormidiu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139147contigH-elongata_contig139147:746..1693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue7.5e-28
Seed eggNOG ortholog2880.D7G9E2
GOsGO:0003674,GO:0003824,GO:0003955,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010207,GO:0015979,GO:0016043,GO:0016491,GO:0016651,GO:0016655,GO:0019684,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0065003,GO:0071840
EggNOG free text desc.Vitamin K epoxide reductase family
EggNOG OGs2QRER@2759,COG4243@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size243
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929825.4398303-CDS-H-elongata_contig139147:745..9131622929825.4398303-CDS-H-elongata_contig139147:745..913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139147 746..913 +
1691679173.8384533-CDS-H-elongata_contig139147:745..9131691679173.8384533-CDS-H-elongata_contig139147:745..913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139147 746..913 +
1622929825.4601734-CDS-H-elongata_contig139147:1618..16931622929825.4601734-CDS-H-elongata_contig139147:1618..1693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139147 1619..1693 +
1691679173.8487527-CDS-H-elongata_contig139147:1618..16931691679173.8487527-CDS-H-elongata_contig139147:1618..1693Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139147 1619..1693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139147.2724.1prot_H-elongata_contig139147.2724.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139147 746..1693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139147.2724.1

>prot_H-elongata_contig139147.2724.1 ID=prot_H-elongata_contig139147.2724.1|Name=mRNA_H-elongata_contig139147.2724.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
MWPSINRKAIGVMASAGALESAFLTYQKIRPGGLDLLCGAGGGCADVLSG
PYSNVLGIPLSALGALGYLLVAGLALMPLFL
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mRNA from alignment at H-elongata_contig139147:746..1693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139147.2724.1 ID=mRNA_H-elongata_contig139147.2724.1|Name=mRNA_H-elongata_contig139147.2724.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=948bp|location=Sequence derived from alignment at H-elongata_contig139147:746..1693+ (Himanthalia elongata Himel1 dioecious)
ATGTGGCCTTCGATCAATCGAAAGGCGATCGGGGTGATGGCCTCCGCAGG AGCGCTCGAATCGGCCTTCCTGACGTACCAAAAAATAAGGCCCGGAGGTC TCGACCTCTTGTGCGGGGCTGGCGGAGGCTGCGCCGACGTGTTGAGCGGG CCGTACTCGAACGTATTGGTGAGCATGGGTTGTACACTACTAGTGTGCAC TAACTACTGACTACGCTAGTATTAACACTGTGGTACAGATTGTTGTGGCG CTAGGGTGATTGCTTGATCGGAGGTACGACTGCCGTAGCGAGCCCAACAG CAATCGTAAAATCCATTCTATCGCACCTGGCAGAGGGATAGTTGCGCTTG ATATTCATCCTGGCGCAGCTTGCGTTAAGGGCGACTTCGGCGGCATTCGT CGATTTGCAATACGATTATAGCGATGTTATGACGTCAGAAGCTCGTCCCC AATTGCGACCGCTGAGCAAGTTGTCAGTTGTGCAAGCACGTCTGAAAGAG AAGGCAAAGGTCAACCGTTGTGTTATAAGGTGCGTAGGAGGAGCCCGTAA GCATAATCGGGATACAACCGCGTATGCGTGAACGGGGGAAATAGATGGGT ATACCTTAGGACGAGAGGCGGGGATGGGCAACGTTGCAGTGGATGGGATA GGTAAACCTAGTGCGTTGAACGGGCCTACTCCATCGGCCTCATGAGGATG AATGCCGGCAAAAAAACTATAATAGCAGACAAAACAACTTCTAACAAGCA ACGAAAGAATACTGCGATTTTACTAGCAGGGAATCTAGAACATGATCCTA TTAATCCACATCGTACAACCGCAGCATAGGCCCTACGTATTGTCTTGTCC CTAACTGCTATCTTTCCGCCCAGGGTATCCCACTATCAGCGCTCGGTGCC CTGGGTTATCTTCTCGTCGCTGGTCTTGCCCTTATGCCGCTCTTCCTG
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Coding sequence (CDS) from alignment at H-elongata_contig139147:746..1693+

>mRNA_H-elongata_contig139147.2724.1 ID=mRNA_H-elongata_contig139147.2724.1|Name=mRNA_H-elongata_contig139147.2724.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig139147:746..1693+ (Himanthalia elongata Himel1 dioecious)
ATGTGGCCTTCGATCAATCGAAAGGCGATCGGGGTGATGGCCTCCGCAGG
AGCGCTCGAATCGGCCTTCCTGACGTACCAAAAAATAAGGCCCGGAGGTC
TCGACCTCTTGTGCGGGGCTGGCGGAGGCTGCGCCGACGTGTTGAGCGGG
CCGTACTCGAACGTATTGATGTGGCCTTCGATCAATCGAAAGGCGATCGG
GGTGATGGCCTCCGCAGGAGCGCTCGAATCGGCCTTCCTGACGTACCAAA
AAATAAGGCCCGGAGGTCTCGACCTCTTGTGCGGGGCTGGCGGAGGCTGC
GCCGACGTGTTGAGCGGGCCGTACTCGAACGTATTGGGTATCCCACTATC
AGCGCTCGGTGCCCTGGGTTATCTTCTCGTCGCTGGTCTTGCCCTTATGC
CGCTCTTCCTGGGTATCCCACTATCAGCGCTCGGTGCCCTGGGTTATCTT
CTCGTCGCTGGTCTTGCCCTTATGCCGCTCTTCCTG
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