prot_H-elongata_contig139071.2718.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig139071.2718.1
Unique Nameprot_H-elongata_contig139071.2718.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length132
Homology
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6L2LV04_TANCI (Copia protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LV04_TANCI)

HSP 1 Score: 97.1 bits (240), Expect = 4.930e-23
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 0
Query:    5 IARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLET----EIYIELPEAYRDFRK--HVGLLNKAMYGIIHAGLLW 131
            I+  VW+ V  PK  T++GT+ VF+ K+D++G + +YK RLVAQG+ Q +GI Y+E+ +      SIR++LG    L ++  Q+DV  A+L      E+Y+  P  + DF K  HV  L KA+YG+  A   W
Sbjct:    9 ISNDVWEFVPNPKDMTIIGTKWVFRNKLDENGVVSRYKARLVAQGYNQQEGIDYDETYAPVARLESIRILLGYACTLDFKLFQMDVKSAFLNDFNNEEVYMAQPLGFIDFAKPNHVYRLKKALYGLKQAPKAW 141          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 97.1 bits (240), Expect = 1.030e-22
Identity = 53/134 (39.55%), Postives = 79/134 (58.96%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYL----ETEIYIELPEAY--------RDFRKHVGLLNKAMYGIIHAGLLW 131
            W +V+RP+GKTV+G+R VF+ K+  DG +++ K RLVA+GF Q+ G HY E+ +     +SIR V+ + A    E  QLD   AYL    E EIY+E+P+          +D    V  + KA+YG+  +G +W
Sbjct:   49 WTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMW 182          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A087FZR2_ARAAL (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087FZR2_ARAAL)

HSP 1 Score: 99.8 bits (247), Expect = 8.990e-22
Identity = 53/133 (39.85%), Postives = 81/133 (60.90%), Query Frame = 0
Query:    5 IARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYL----ETEIYIELPEAYRD--FRKHVGLLNKAMYGIIHAGLLW 131
            +   VW++V RP G  V+GT+ +FK KID+DG + + K RLVAQG+ Q++G+ +EE+ +      SIR  LGM   L ++  Q+DV  A+L    + E+Y+E P+ + D    +HV  L KA+YG+  A   W
Sbjct:  438 VRNDVWELVPRPVGVNVVGTKWIFKNKIDEDGVVVRNKARLVAQGYSQIEGVDFEETFAPVARLESIRFFLGMACILNFKVFQMDVKSAFLNGFLQEEVYVEQPKGFEDPTHPEHVYKLKKALYGLKQAPRAW 570          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A087GV99_ARAAL (Integrase catalytic domain-containing protein n=2 Tax=Arabis alpina TaxID=50452 RepID=A0A087GV99_ARAAL)

HSP 1 Score: 99.8 bits (247), Expect = 8.990e-22
Identity = 53/137 (38.69%), Postives = 84/137 (61.31%), Query Frame = 0
Query:    1 MKGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYL----ETEIYIELPEAYRD--FRKHVGLLNKAMYGIIHAGLLW 131
            +K  +   VW++V RP+G  V+GT+ +FK KID +G + + K RLVAQG+ Q++G+++EE+ +      SIR  LGM   L ++  Q+DV  A+L    + E+Y+E P+ + D    +HV  L KA+YG+  A   W
Sbjct:  691 LKQFVRNDVWELVPRPEGVNVVGTKWIFKNKIDANGVVVRNKARLVAQGYSQIEGVNFEETFAPVARLESIRFFLGMTCILNFKVFQMDVKSAFLNGFLQEEVYVEQPKGFEDPAHPEHVYKLKKALYGLKQAPRAW 827          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A0C2WM40_AMAMK (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WM40_AMAMK)

HSP 1 Score: 98.6 bits (244), Expect = 2.060e-21
Identity = 52/130 (40.00%), Postives = 76/130 (58.46%), Query Frame = 0
Query:    8 GVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQA--SIRMVLGMIAALGWEARQLDVDMAYL----ETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW 131
            G W++V+ P+GK ++G + VF +K D++GRI ++K RLVAQGF Q  G+ Y  + +  P     S+R  L + A   WE RQ DV  AYL    + EIY+  P  + D    V  L K++YG+  AG +W
Sbjct:   75 GTWELVDLPEGKNIVGCKWVFTKKRDEEGRINRFKARLVAQGFSQKPGVDYSNTGTFAPVMRFESLRTHLALAAVNNWELRQFDVKSAYLNGSLDEEIYMRQPPGFDDGSGRVCRLKKSIYGLKQAGNIW 204          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6L2J662_TANCI (Copia protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2J662_TANCI)

HSP 1 Score: 98.6 bits (244), Expect = 2.260e-21
Identity = 52/133 (39.10%), Postives = 83/133 (62.41%), Query Frame = 0
Query:    5 IARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLE----TEIYIELPEAYRDFRK--HVGLLNKAMYGIIHAGLLW 131
            IA  VW++V +P+  T++GT+ VF+ K+D++G + + K RLVAQG+ Q +GI+Y+E+ +      SIR++L  + AL ++  Q+DV  A+L      E+Y+  P  + DF K  HV  L KA+YG+  A   W
Sbjct:  481 IANDVWELVPQPRHMTIIGTKWVFRNKLDENGVVSRNKARLVAQGYNQQEGINYDETYAPVARLGSIRILLAYVCALDFKLFQMDVKSAFLNGFINEEVYVAQPSGFIDFEKPYHVYKLKKALYGLKQAPKAW 613          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6L2JPC2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JPC2_TANCI)

HSP 1 Score: 96.3 bits (238), Expect = 2.770e-21
Identity = 54/129 (41.86%), Postives = 79/129 (61.24%), Query Frame = 0
Query:    5 IARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLET----EIYIELPEAYRDFRK--HVGLLNKAMYGIIHA 127
            IA  VW++V +PK  T++GT+ VF+ K+D++G I + K RLVAQG+ Q +GI Y E+ +      SIR++L    AL ++  Q+DV  A+L      E+YI  P  + DF K  HV  L KA+YG+  A
Sbjct:  111 IANAVWELVPQPKNMTIIGTKWVFRNKLDENGIISRNKARLVAQGYNQQEGIDYNETYAPVARLESIRILLAYACALDFKLFQMDVKSAFLNDFINEEVYIAQPPGFTDFEKSNHVYKLKKALYGLKQA 239          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6L2JYN8_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JYN8_TANCI)

HSP 1 Score: 98.2 bits (243), Expect = 3.110e-21
Identity = 53/133 (39.85%), Postives = 82/133 (61.65%), Query Frame = 0
Query:    5 IARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLE----TEIYIELPEAYRDFRK--HVGLLNKAMYGIIHAGLLW 131
            +A  VW++V +PK  T++GT+ VF+ K+D++G + + K RLVAQG+ Q +GI Y+E+ ++     SIR+VL    AL ++  Q+DV  A+L      E+Y+  P  + DF K  HV  L KA+YG+  A   W
Sbjct:  547 VANNVWELVPQPKNITIIGTKWVFRNKLDENGIVSRNKARLVAQGYNQQEGIDYDETYALVVRLESIRIVLAYACALDFKLFQMDVKSAFLNGFINEEVYVTQPPGFIDFEKPDHVYKLKKALYGLKPAPKAW 679          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI)

HSP 1 Score: 97.8 bits (242), Expect = 4.360e-21
Identity = 50/126 (39.68%), Postives = 78/126 (61.90%), Query Frame = 0
Query:   10 WQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYL----ETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW 131
            W++VE PKG+ V+G+R V+K K+D+DGR  +YK RLVAQGF Q  GI + ++ +     ++IR+++ +  AL      +D+  AYL    + E+Y++ P  Y D    V LL +A+YG+  AG  W
Sbjct:  725 WELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAW 850          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A540MBJ7_MALBA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540MBJ7_MALBA)

HSP 1 Score: 95.1 bits (235), Expect = 4.680e-21
Identity = 47/124 (37.90%), Postives = 82/124 (66.13%), Query Frame = 0
Query:    7 RGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYL----ETEIYIELPEAYRDFR--KHVGLLNKAMYGI 124
            +G W++V  P  + V+G++ V+K K D+DG++ +YK RLVA G+ Q +G+ Y+E+ S+     ++R+VL + A  GWE RQLDV  A+L    + E++++ P+ ++D +   HV  L K++YG+
Sbjct:  165 QGTWELVPPPVDRNVIGSKWVYKIKKDQDGKVSRYKARLVAHGYSQEQGLDYDETFSLVVRHTTVRLVLSLAAMKGWELRQLDVKNAFLHGELQEEVFMKQPQGFQDPQHPNHVCKLLKSLYGL 288          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L2LV04_TANCI4.930e-2339.85Copia protein n=1 Tax=Tanacetum cinerariifolium Ta... [more]
A0A0A9Y7J8_LYGHE1.030e-2239.55Retrovirus-related Pol polyprotein from transposon... [more]
A0A087FZR2_ARAAL8.990e-2239.85Integrase catalytic domain-containing protein (Fra... [more]
A0A087GV99_ARAAL8.990e-2238.69Integrase catalytic domain-containing protein n=2 ... [more]
A0A0C2WM40_AMAMK2.060e-2140.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2J662_TANCI2.260e-2139.10Copia protein n=1 Tax=Tanacetum cinerariifolium Ta... [more]
A0A6L2JPC2_TANCI2.770e-2141.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2JYN8_TANCI3.110e-2139.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A177TV96_9BASI4.360e-2139.68Integrase catalytic domain-containing protein n=1 ... [more]
A0A540MBJ7_MALBA4.680e-2137.90Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 9..131
e-value: 2.9E-25
score: 89.3
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 10..123
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 10..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139071contigH-elongata_contig139071:780..1187 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139071.2718.1mRNA_H-elongata_contig139071.2718.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig139071 3..1211 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig139071.2718.1 ID=prot_H-elongata_contig139071.2718.1|Name=mRNA_H-elongata_contig139071.2718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MKGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGF
RQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLETEIY
IELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like