mRNA_H-elongata_contig139071.2718.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig139071.2718.1
Unique NamemRNA_H-elongata_contig139071.2718.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 251 bits (640), Expect = 4.850e-73
Identity = 148/403 (36.72%), Postives = 231/403 (57.32%), Query Frame = 1
Query:    1 WKRAIAREMKGQIARGVWQVVER-PKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAY----LETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVAL 1194
            W +A++ E++G I  G + +  + P+G  V+  R VFK K D+ G+I K K RLVA+GF+Q  G+ Y E+ S T   ASIR+V+ +      E   LD++ A+    L+ E+ ++LP         +  LNK++YG+  A   +   L  +L   GF++S +DPCV R ++   V+ +I ++VDD+L A  TKR  E  V  L    P K+LGE  ++L C  +RDR AGT+ + Q  YI ++ ERF + +TS IP+       S +   ++  E EE   +P+RE+VG LMW A  TRP+ S A   +A+ +  P+ + W+AAQK L YL  T +L + Y  +         +VDAD+ + +  RRSVSG   ++A   +SWF   QK  ++++SE+EY+A+
Sbjct:  228 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAM 622          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 5.720e-73
Identity = 152/402 (37.81%), Postives = 231/402 (57.46%), Query Frame = 1
Query:    1 WKRAIAREMKGQIARGVWQVVE-RPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAY----LETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVA 1191
            W++A+  E +G +  G +  V+  P+G+  + ++  F  K +K+G+I  +K RLVA+GF Q+  + Y  SSS  P+ ASI+++L +    G      DV  AY    L+ E++++LP    D    +    +A+YG+  +G  W  +    L E GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++  C I RD  AGTL + Q  YI +M ERF V  TS IP+  G         L    E EE  + P RE +G++MW +T +RPD+SFA   +A+    P   HW A QK L YL  TR+LGITY  +   G  L+ +VDA Y    D RRSVSG A  +    +S   + Q + +++S+E+EY+A
Sbjct:  752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-------DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIA 1142          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 9.780e-73
Identity = 152/402 (37.81%), Postives = 231/402 (57.46%), Query Frame = 1
Query:    1 WKRAIAREMKGQIARGVWQVVE-RPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAY----LETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVA 1191
            W++A+  E +G +  G +  V+  P+G+  + ++  F  K +K+G+I  +K RLVA+GF Q+  + Y  SSS  P+ ASI+++L +    G      DV  AY    L+ E++++LP    D    +    +A+YG+  +G  W  +    L E GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++  C I RD  AGTL + Q  YI +M ERF V  TS IP+  G         L    E EE  + P RE +G++MW +T +RPD+SFA   +A+    P   HW A QK L YL  TR+LGITY  +   G  L+ +VDA Y    D RRSVSG A  +    +S   + Q + +++S+E+EY+A
Sbjct: 1131 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-------DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIA 1521          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 9.910e-73
Identity = 152/402 (37.81%), Postives = 231/402 (57.46%), Query Frame = 1
Query:    1 WKRAIAREMKGQIARGVWQVVE-RPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAY----LETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVA 1191
            W++A+  E +G +  G +  V+  P+G+  + ++  F  K +K+G+I  +K RLVA+GF Q+  + Y  SSS  P+ ASI+++L +    G      DV  AY    L+ E++++LP    D    +    +A+YG+  +G  W  +    L E GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++  C I RD  AGTL + Q  YI +M ERF V  TS IP+  G         L    E EE  + P RE +G++MW +T +RPD+SFA   +A+    P   HW A QK L YL  TR+LGITY  +   G  L+ +VDA Y    D RRSVSG A  +    +S   + Q + +++S+E+EY+A
Sbjct: 1151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-------DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIA 1541          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 1.000e-72
Identity = 152/402 (37.81%), Postives = 231/402 (57.46%), Query Frame = 1
Query:    1 WKRAIAREMKGQIARGVWQVVE-RPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAY----LETEIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVA 1191
            W++A+  E +G +  G +  V+  P+G+  + ++  F  K +K+G+I  +K RLVA+GF Q+  + Y  SSS  P+ ASI+++L +    G      DV  AY    L+ E++++LP    D    +    +A+YG+  +G  W  +    L E GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA + + D E+ +  L   FP K+LGE  ++  C I RD  AGTL + Q  YI +M ERF V  TS IP+  G         L    E EE  + P RE +G++MW +T +RPD+SFA   +A+    P   HW A QK L YL  TR+LGITY  +   G  L+ +VDA Y    D RRSVSG A  +    +S   + Q + +++S+E+EY+A
Sbjct: 1294 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA-------DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIA 1684          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 5.640e-72
Identity = 147/403 (36.48%), Postives = 233/403 (57.82%), Query Frame = 1
Query:    1 WKRAIAREMKGQIARGVWQVVER-PKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLET----EIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVAL 1194
            W +A++ E++G I  G + +  + P+G  V+  R VFK K D+ G+I K K RLVA+GF+Q  G+ Y E+ S T   ASIR+V+ +      E   LD++ A++++    E++++LP         +  LNK++YG+  A   +   L  +L   GF++S +DPCV R ++   V+ +I ++VDD+L A  TKR  E  V  L    P K+LGE  ++L C  +RDR AGT+ + Q  YI ++ ERF + +TS IP+       S +   ++  E EE   +P+RE+VG LMW A  TRP+ S A   +A+ +  P+ + W+AAQK L YL  T +L + Y  +         +VDAD+ + +  RRSVSG   ++A   +SWF   QK  ++++SE+EY+A+
Sbjct:  497 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAM 891          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 1.410e-71
Identity = 147/403 (36.48%), Postives = 231/403 (57.32%), Query Frame = 1
Query:    1 WKRAIAREMKGQIARGVWQVVER-PKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLET----EIYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVAL 1194
            W +A++ E++G I  G + +  + P+G  V+  R VFK K D+ G+I K K RLVA+GF+Q  G+ Y E+ S T   ASIR+V+ +      E   LD++ A++++    E++++LP         +  LNK++YG+  A   +   L  +L   GF++S +DPCV R ++   V+ +I ++VDD+L A  TKR  E  V  L    P K+LGE  ++L C  +RDR AGT+ + Q  YI ++ ERF + +TS IP+       S +   ++  E EE   +P+RE+VG LMW A  TRP+ S A   +A+ +  P+ + W+AAQK L YL  T  L + Y  +         +VDAD+ + +  RRSVSG   ++A   +SWF   QK  ++++SE EY+A+
Sbjct:  433 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAYLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEPEYIAI 827          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 1.350e-70
Identity = 141/399 (35.34%), Postives = 223/399 (55.89%), Query Frame = 1
Query:   13 IAREMKGQIARGVWQVVER-PKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLETE----IYIELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVAL 1194
            ++ E++G I  G + +  + P G  V+  R VFK   D+  +I K K RLVA+GF+Q  G+ Y E+ S T   AS R+V+ +      E    D++ A++++E    ++++LP         V  LNK++YG+  A   +   L  EL+  GF++S +DPCV R ++   VV ++ ++VDD+L A  T    E  V  L    P K LGE  ++L C   RDR AGT+ + Q  YI ++ ERF V +TS IP+       S +   ++  E E    +P+RE+VG+LMW A  TRPDIS A   +A+ +  P+ +HW+AAQK L YL  T +L + +  +         +VDAD+ + ++ RRSVSG   ++A   + W  + QK  + ++SE+EY+A+
Sbjct:    1 MSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWNADETAKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTTSL-AEVVVAALGDFLPTKSLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-------SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDKSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAM 391          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR)

HSP 1 Score: 247 bits (630), Expect = 1.540e-70
Identity = 148/405 (36.54%), Postives = 225/405 (55.56%), Query Frame = 1
Query:    1 WKRAIAREMKGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYL----ETEIYIELPEAY--RDFRKHVGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSIIPSVAG---GKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYV 1188
            W  A+  EM   ++  VW +V  P G   +G + VFK K D  G I++YK RLVA+GF Q +GI Y E+ S    + S R+++ ++A   +E  Q+DV  A+L    E E+Y++ PE +   +    V  LN+++YG+  A   W       +   GF+ +  D C+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+GEASY +   I RDRN G L L Q  YI+ + ERF +   S  PSVA    G     S   Q D E E M+ IPY   VG+LM+A   TRPDI++A   L ++  NP   HW+AA+K ++YL  T+N  + Y  +     ++  + D+DY  C DTR+S SG   M+A  A+SW    Q +TA ++ E+E+V
Sbjct:  448 WHDAMKEEMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCS--PSVAPIVKGDRFELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKNFMLMY--KRTDNLEVIGYSDSDYAGCIDTRKSTSGYVFMLASGAVSWRSAKQTLTATSTMEAEFV 847          
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Match: A0A438E9F8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E9F8_VITVI)

HSP 1 Score: 238 bits (607), Expect = 8.370e-70
Identity = 149/405 (36.79%), Postives = 222/405 (54.81%), Query Frame = 1
Query:    1 WKRAIAREMKGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGFRQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYL----ETEIYIELPEAYRDFRKH--VGLLNKAMYGIIHAGLLW*NNLGIELEEKGFQRSQADPCVFRRILHGLVVVVIVVYVDDLLVASATKRDEEQAVRDLRSCFPIKDLGEASYYLECHITRDRNAGTLTLDQHQYIHTMAERFGVTKTSI--IPSVAGGKALSKSYSLQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPRPTHWRAAQKALQYLWRTRNLGITYGVEPVGGTKLSAWVDADYGTCSDTRRSVSGGAGMMADAAISWFLRVQKVTAVASSESEYVA 1191
            WK A+  EM      GVW +VE P G   +G + VFK K D  GRI++YK RLV +G+ Q +GI ++E+ S    + S R++L ++A    E  Q+DV  ++L    +  +Y+E P  + +  K   V  LNK++YG+  A   W       + + GF+++  D C++ R+  G   + +V+YVDD+L+AS       +    L + F +KDLGEASY L   I RDR  G L L Q  YI  + +RF +   S   +P V   K  SK+   Q D E EEMR IPY  +VG+LM+A   T PDI+F    L ++  NPR  HW+AA+  L YL  T++L +TY    +    +  + DAD+  C D ++S +G   MMA   +SW    Q +T  ++ E++YVA
Sbjct:   32 WKEAMDDEMNSMYMNGVWDLVELPHGCKPVGCKWVFKTKRDSSGRIERYKTRLVVKGYSQREGIDFKETFSPVSIKDSFRVILSIVAHFDLELHQMDVKTSFLNGDLDENVYMEQPTGFTEVGKEHLVCKLNKSIYGLKQASRQWYLKFDRIITQNGFKKNTVDRCIYLRV-SGSSYIFLVLYVDDILLASNDSDLLIETKHMLSTHFDMKDLGEASYVLSIKIFRDRANGVLKLSQRTYIKKILKRFNMHNCSSTKVPIVKDDK-FSKAQCPQNDDEREEMRTIPYLSLVGSLMYAQVCTHPDIAFVVGMLGRYLSNPRIEHWKAAKNVLMYLQGTKDLMLTYRRTNI--LDVVGFCDADFVGCIDDKKSTTGYIFMMAGGVVSWKSVKQTLTTSSTMEAKYVA 432          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig139071.2718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV80_9PHAE4.850e-7336.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE5.720e-7337.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE9.780e-7337.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE9.910e-7337.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.000e-7237.81Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5J594_9PHAE5.640e-7236.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LDZ0_9PHAE1.410e-7136.48CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JQD0_9PHAE1.350e-7035.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3LA50_TRIPR1.540e-7036.54Putative retrotransposon Ty1-copia subclass protei... [more]
A0A438E9F8_VITVI8.370e-7036.79Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig139071contigH-elongata_contig139071:3..1211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.0
Seed ortholog evalue1.8e-18
Seed eggNOG ortholog4081.Solyc03g062850.1.1
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGs37SNQ@33090,3GHRQ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1197
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig139071.2718.1prot_H-elongata_contig139071.2718.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig139071 780..1187 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.9228473-UTR-H-elongata_contig139071:2..7791622929824.9228473-UTR-H-elongata_contig139071:2..779Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139071 3..779 -
1691679173.6494803-UTR-H-elongata_contig139071:2..7791691679173.6494803-UTR-H-elongata_contig139071:2..779Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139071 3..779 -
1622929824.975734-UTR-H-elongata_contig139071:1187..12111622929824.975734-UTR-H-elongata_contig139071:1187..1211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139071 1188..1211 -
1691679173.679541-UTR-H-elongata_contig139071:1187..12111691679173.679541-UTR-H-elongata_contig139071:1187..1211Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig139071 1188..1211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929824.9414423-CDS-H-elongata_contig139071:779..8811622929824.9414423-CDS-H-elongata_contig139071:779..881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139071 780..881 -
1691679173.6622875-CDS-H-elongata_contig139071:779..8811691679173.6622875-CDS-H-elongata_contig139071:779..881Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139071 780..881 -
1622929824.961156-CDS-H-elongata_contig139071:893..11871622929824.961156-CDS-H-elongata_contig139071:893..1187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139071 894..1187 -
1691679173.6712143-CDS-H-elongata_contig139071:893..11871691679173.6712143-CDS-H-elongata_contig139071:893..1187Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig139071 894..1187 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig139071.2718.1

>prot_H-elongata_contig139071.2718.1 ID=prot_H-elongata_contig139071.2718.1|Name=mRNA_H-elongata_contig139071.2718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MKGQIARGVWQVVERPKGKTVLGTRVVFKRKIDKDGRIKKYKFRLVAQGF
RQVKGIHYEESSSMTPAQASIRMVLGMIAALGWEARQLDVDMAYLETEIY
IELPEAYRDFRKHVGLLNKAMYGIIHAGLLW*
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mRNA from alignment at H-elongata_contig139071:3..1211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig139071.2718.1 ID=mRNA_H-elongata_contig139071.2718.1|Name=mRNA_H-elongata_contig139071.2718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1209bp|location=Sequence derived from alignment at H-elongata_contig139071:3..1211- (Himanthalia elongata Himel1 dioecious)
TGGAAAAGGGCAATCGCGCGCGAGATGAAAGGGCAAATTGCTCGAGGCGT ATGGCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGTTGGGCACGAGAG TAGTTTTCAAGCGAAAAATCGACAAGGATGGAAGGATCAAAAAGTATAAA TTTCGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGA GGAATCCTCCTCTATGACTCCTGCGCAGGCCAGCATTAGAATGGTACTGG GCATGATCGCGGCTCTCGGCTGGGAGGCGCGGCAGCTGGACGTCGATATG GCCTACCTGGAGACCGAAGTGGAGGAGTAGATCTACATTGAGCTCCCGGA AGCATACCGTGACTTCAGGAAACATGTCGGCCTACTAAATAAGGCAATGT ACGGAATCATCCACGCCGGGTTGCTGTGGTAAAACAACCTCGGGATCGAG CTCGAGGAGAAGGGTTTCCAGAGATCTCAAGCCGACCCATGTGTGTTCCG GCGGATTCTCCACGGGTTAGTGGTAGTCGTCATTGTGGTCTACGTCGACG ACCTGCTGGTTGCTAGTGCGACGAAACGTGATGAGGAGCAAGCGGTAAGG GACCTGCGCTCCTGTTTCCCAATCAAGGATCTGGGGGAGGCTTCGTATTA CCTGGAATGCCACATCACGCGGGACCGGAACGCCGGGACACTGACGCTCG ACCAGCATCAGTACATACATACTATGGCGGAACGTTTTGGCGTGACGAAG ACCAGCATCATCCCGTCCGTGGCAGGAGGAAAAGCCCTTTCGAAATCATA CAGCCTGCAAACAGACGCAGAGGTTGAAGAAATGCGCCAGATTCCCTACC GAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGCCCGAC ATTTCATTCGCTGCGCACCAACTGGCGAAATTCAACGACAACCCGAGACC GACACATTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTC GGAACCTCGGGATCACCTACGGAGTGGAACCGGTGGGGGGGACCAAGTTA TCAGCGTGGGTTGACGCAGACTACGGCACCTGCTCGGACACGCGTCGCTC AGTGTCGGGAGGGGCGGGGATGATGGCTGACGCGGCCATTAGTTGGTTCT TACGAGTGCAAAAGGTAACGGCGGTGGCGTCGTCCGAATCGGAATACGTC GCGCTGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig139071:3..1211-

>mRNA_H-elongata_contig139071.2718.1 ID=mRNA_H-elongata_contig139071.2718.1|Name=mRNA_H-elongata_contig139071.2718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig139071:3..1211- (Himanthalia elongata Himel1 dioecious)
ATGAAAGGGCAAATTGCTCGAGGCGTATGGCAGGTGGTGGAGCGCCCAAA
AGGGAAGACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGAAAAATCGACA
AGGATGGAAGGATCAAAAAGTATAAATTTCGTCTCGTGGCGCAGGGTTTC
AGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTATGACTCCTGC
GCAGGCCAGCATTAGAATGGTACTGGGCATGATCGCGGCTCTCGGCTGGG
AGGCGCGGCAGCTGGACGTCGATATGGCCTACCTGGAGACCGAAATGAAA
GGGCAAATTGCTCGAGGCGTATGGCAGGTGGTGGAGCGCCCAAAAGGGAA
GACGGTGTTGGGCACGAGAGTAGTTTTCAAGCGAAAAATCGACAAGGATG
GAAGGATCAAAAAGTATAAATTTCGTCTCGTGGCGCAGGGTTTCAGGCAG
GTCAAAGGCATACACTACGAGGAATCCTCCTCTATGACTCCTGCGCAGGC
CAGCATTAGAATGGTACTGGGCATGATCGCGGCTCTCGGCTGGGAGGCGC
GGCAGCTGGACGTCGATATGGCCTACCTGGAGACCGAAATCTACATTGAG
CTCCCGGAAGCATACCGTGACTTCAGGAAACATGTCGGCCTACTAAATAA
GGCAATGTACGGAATCATCCACGCCGGGTTGCTGTGGTAAATCTACATTG
AGCTCCCGGAAGCATACCGTGACTTCAGGAAACATGTCGGCCTACTAAAT
AAGGCAATGTACGGAATCATCCACGCCGGGTTGCTGTGGTAA
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