prot_H-elongata_contig137803.2654.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig137803.2654.1
Unique Nameprot_H-elongata_contig137803.2654.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length124
Homology
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BLAST of mRNA_H-elongata_contig137803.2654.1 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.290e-28
Identity = 73/123 (59.35%), Postives = 85/123 (69.11%), Query Frame = 0 
Query:    1 EWTSFDVSLALLVASAPLLLLHLLVSAAAFSRSLGPTVQAMSLMAKEAAKVLPLLACILFGCALALHVLYGEGSSLLEGTEYVSPLTEAEEYVDGFRTFGASCGTVLGAGLGVIRPPLDMDVP 123
            EW  F   +ALL ++APLLL  LL   AAF   LGPTV+A+SL+A+EA+KVLP LAC+L G ALALHV+YG+GS LLEGTE           VDGFRTFG SC TV  AG G I+  LD DVP
Sbjct:  568 EWRCFQGFVALLASAAPLLLFRLLGGVAAFLPVLGPTVKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTELPGGS------VDGFRTFGVSCRTVARAGFGDIQV-LDEDVP 683
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BLAST of mRNA_H-elongata_contig137803.2654.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.360e-28
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 0 
Query:    1 EWTSFDVSLALLVASAPLLLLHLLVSAAAFSRSLGPTVQAMSLMAKEAAKVLPLLACILFGCALALHVLYGEGSSLLEGTEYVSPLTEAEEYVDGFRTFGASCGTVLGAGLGVIRPPLDMDVP 123
            EW  F   +AL  ++APLLL  LL   AAF   LGP V+A+SL+A+EA+KVLP LAC+L G ALALHV+YG+GS LLEGTE       +  +VDGFRTFG SC TV  AG G I+ P D DVP
Sbjct: 1274 EWMCFQGFVALFASAAPLLLFRLLRGVAAFLPVLGPAVKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTEL------SGGFVDGFRTFGVSCRTVARAGFGDIQVP-DEDVP 1389
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137803.2654.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN03_ECTSI2.290e-2859.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4C8_9PHAE2.360e-2857.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 51..70
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 31..50
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..123
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 49..71
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137803contigH-elongata_contig137803:102..1109 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137803.2654.1mRNA_H-elongata_contig137803.2654.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig137803 102..1109 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig137803.2654.1 ID=prot_H-elongata_contig137803.2654.1|Name=mRNA_H-elongata_contig137803.2654.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
EWTSFDVSLALLVASAPLLLLHLLVSAAAFSRSLGPTVQAMSLMAKEAAK
VLPLLACILFGCALALHVLYGEGSSLLEGTEYVSPLTEAEEYVDGFRTFG
ASCGTVLGAGLGVIRPPLDMDVP*
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