mRNA_H-elongata_contig137803.2654.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig137803.2654.1
Unique NamemRNA_H-elongata_contig137803.2654.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig137803.2654.1 vs. uniprot
Match: D7FN03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN03_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.290e-28
Identity = 73/123 (59.35%), Postives = 85/123 (69.11%), Query Frame = 1 
Query:    1 EWTSFDVSLALLVASAPLLLLHLLVSAAAFSRSLGPTVQAMSLMAKEAAKVLPLLACILFGCALALHVLYGEGSSLLEGTEYVSPLTEAEEYVDGFRTFGASCGTVLGAGLGVIRPPLDMDVP 369
            EW  F   +ALL ++APLLL  LL   AAF   LGPTV+A+SL+A+EA+KVLP LAC+L G ALALHV+YG+GS LLEGTE           VDGFRTFG SC TV  AG G I+  LD DVP
Sbjct:  568 EWRCFQGFVALLASAAPLLLFRLLGGVAAFLPVLGPTVKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTELPGGS------VDGFRTFGVSCRTVARAGFGDIQV-LDEDVP 683
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BLAST of mRNA_H-elongata_contig137803.2654.1 vs. uniprot
Match: A0A6H5L4C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C8_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.360e-28
Identity = 71/123 (57.72%), Postives = 85/123 (69.11%), Query Frame = 1 
Query:    1 EWTSFDVSLALLVASAPLLLLHLLVSAAAFSRSLGPTVQAMSLMAKEAAKVLPLLACILFGCALALHVLYGEGSSLLEGTEYVSPLTEAEEYVDGFRTFGASCGTVLGAGLGVIRPPLDMDVP 369
            EW  F   +AL  ++APLLL  LL   AAF   LGP V+A+SL+A+EA+KVLP LAC+L G ALALHV+YG+GS LLEGTE       +  +VDGFRTFG SC TV  AG G I+ P D DVP
Sbjct: 1274 EWMCFQGFVALFASAAPLLLFRLLRGVAAFLPVLGPAVKAISLLAREASKVLPSLACLLLGTALALHVMYGDGSPLLEGTEL------SGGFVDGFRTFGVSCRTVARAGFGDIQVP-DEDVP 1389
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig137803.2654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN03_ECTSI2.290e-2859.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4C8_9PHAE2.360e-2857.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig137803contigH-elongata_contig137803:102..1109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_002960.1
Exons2
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929818.4392552-CDS-H-elongata_contig137803:101..2181622929818.4392552-CDS-H-elongata_contig137803:101..218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137803 102..218 +
1691679169.6074445-CDS-H-elongata_contig137803:101..2181691679169.6074445-CDS-H-elongata_contig137803:101..218Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137803 102..218 +
1622929818.4602423-CDS-H-elongata_contig137803:854..11091622929818.4602423-CDS-H-elongata_contig137803:854..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137803 855..1109 +
1691679169.6152096-CDS-H-elongata_contig137803:854..11091691679169.6152096-CDS-H-elongata_contig137803:854..1109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig137803 855..1109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig137803.2654.1prot_H-elongata_contig137803.2654.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig137803 102..1109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig137803.2654.1

>prot_H-elongata_contig137803.2654.1 ID=prot_H-elongata_contig137803.2654.1|Name=mRNA_H-elongata_contig137803.2654.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
EWTSFDVSLALLVASAPLLLLHLLVSAAAFSRSLGPTVQAMSLMAKEAAK
VLPLLACILFGCALALHVLYGEGSSLLEGTEYVSPLTEAEEYVDGFRTFG
ASCGTVLGAGLGVIRPPLDMDVP*
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mRNA from alignment at H-elongata_contig137803:102..1109+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig137803.2654.1 ID=mRNA_H-elongata_contig137803.2654.1|Name=mRNA_H-elongata_contig137803.2654.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1008bp|location=Sequence derived from alignment at H-elongata_contig137803:102..1109+ (Himanthalia elongata Himel1 dioecious)
GAGTGGACCTCATTCGATGTGTCGCTAGCGCTGCTCGTCGCCTCGGCCCC
GCTTCTGCTCCTTCACCTTCTGGTTTCAGCCGCCGCCTTCTCTCGCTCCC
TCGGGCCGACGGTACAGGTAAAAAACTTTCTTTGTCATCGTCCCTTTTTT
TTCCACCTTTTTCTTATCGCTTTTACTCTTCTTCTTTTTTGTTTTACAGC
CTAGCGTGTTAAAGCGTGTTAGATAAATAACTGAGTGACGTTACGAACAG
ATGTTGCGTCACCACAGGTGACCGTCGCAGGTGGGAGGATTGACAATTTT
ATTACCTCTAGACTCCTAAGGCTGATTGATCCTGGTTTTGTTTCACTGCC
AAGATCTTCGGCTACAAAGGTGATATATGTAAATATATTACATCATAAAT
TATCAGCTTCTGCAACGCGATAGAAAACGCGGGAGTAGTATATGAATCGG
CAGCAAAAATATTTCGTTGCTGGTGTCGTGCCACCTGACGAAAAAACACT
GTTATCCTTGACCTCTAGGTTGCTTGTACGTGACATCTGTAAAAACCTTG
GACTGGAAACCCCTCGGCAGAAGCGTTTGGTTGTCACACGCGCATCTTGG
AGAGTACGCACGTCAGTCAGTCAGTCCATACTGTACCTGTAGAGGCGTGG
GACCCTACGATAACCCCCCACCTCAACAAACGCTTTCGCTCTCCCGCTTC
CCCGCTTTCGCGCGTCCCATCTTCCCCCAACCCCTCCCGACCACCGCTCT
AAGGCAATGTCGCTCATGGCCAAGGAGGCTGCCAAGGTCCTCCCGCTCCT
AGCGTGCATCCTCTTTGGCTGCGCGCTTGCATTGCACGTGCTCTACGGAG
AAGGCTCCTCGTTGCTGGAAGGGACGGAATACGTTTCTCCCCTGACCGAA
GCCGAGGAATACGTGGATGGGTTCCGGACCTTCGGAGCGTCCTGCGGAAC
GGTTCTCGGGGCGGGGCTGGGAGTCATCCGTCCCCCCCTCGATATGGACG
TACCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig137803:102..1109+

>mRNA_H-elongata_contig137803.2654.1 ID=mRNA_H-elongata_contig137803.2654.1|Name=mRNA_H-elongata_contig137803.2654.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig137803:102..1109+ (Himanthalia elongata Himel1 dioecious)
GAGTGGACCTCATTCGATGTGTCGCTAGCGCTGCTCGTCGCCTCGGCCCC
GCTTCTGCTCCTTCACCTTCTGGTTTCAGCCGCCGCCTTCTCTCGCTCCC
TCGGGCCGACGGTACAGGAGTGGACCTCATTCGATGTGTCGCTAGCGCTG
CTCGTCGCCTCGGCCCCGCTTCTGCTCCTTCACCTTCTGGTTTCAGCCGC
CGCCTTCTCTCGCTCCCTCGGGCCGACGGTACAGGCAATGTCGCTCATGG
CCAAGGAGGCTGCCAAGGTCCTCCCGCTCCTAGCGTGCATCCTCTTTGGC
TGCGCGCTTGCATTGCACGTGCTCTACGGAGAAGGCTCCTCGTTGCTGGA
AGGGACGGAATACGTTTCTCCCCTGACCGAAGCCGAGGAATACGTGGATG
GGTTCCGGACCTTCGGAGCGTCCTGCGGAACGGTTCTCGGGGCGGGGCTG
GGAGTCATCCGTCCCCCCCTCGATATGGACGTACCGTGAGCAATGTCGCT
CATGGCCAAGGAGGCTGCCAAGGTCCTCCCGCTCCTAGCGTGCATCCTCT
TTGGCTGCGCGCTTGCATTGCACGTGCTCTACGGAGAAGGCTCCTCGTTG
CTGGAAGGGACGGAATACGTTTCTCCCCTGACCGAAGCCGAGGAATACGT
GGATGGGTTCCGGACCTTCGGAGCGTCCTGCGGAACGGTTCTCGGGGCGG
GGCTGGGAGTCATCCGTCCCCCCCTCGATATGGACGTACCGTGA
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