prot_H-elongata_contig13772.2650.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13772.2650.1
Unique Nameprot_H-elongata_contig13772.2650.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length312
Homology
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 8.670e-32
Identity = 86/223 (38.57%), Postives = 123/223 (55.16%), Query Frame = 0
Query:   98 HRMLAHPSEDITRKTAEIMGIGTTG-QWGACEACFQAKAKRYAVPKTTDERASVKGQRFFVDVCGPMKHLSLSG----IIFVDDYTRFKVVKFVKRKSDTTAALLSLIADY---TTPQELSIKCVRTDNGGKFEGEFQYELDRRSITHEHTPPDTPQYNGVAERALQLLREKAIALMEELDNII-NVPRAK-LWTQAMFFACDVTDKSVTTSTDGVKSPFELW 310
            H    H  E++ +KTA+  G+  TG     C  C  +K +   + K+TD RA+ K  R F+++ G M+  S+ G    +I  DD TR+  V F+K KSD  AA    +ADY   T P E+ +   RTD GG+F+G+F     R  I  E TPP+TP+YNGVAERAL LL + A+A   +   +  + P +  LW +A+  AC   + + TT   G KSP EL+
Sbjct:  139 HNSHGHTHEELLQKTAKQQGVQLTGGPLLPCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFV--ARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATTGNPGHKSPEELF 359          
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.270e-29
Identity = 82/221 (37.10%), Postives = 115/221 (52.04%), Query Frame = 0
Query:   98 HRMLAHPSEDITRKTAEIMGIGTTGQWGACEACFQAKAKRYAVPKTTDERASVKGQRFFVDVCGPMKHLSLSG----IIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYTTPQELS-IKCVRTDNGGKF-EGEFQYELDRRSITHEHTPPDTPQYNGVAERALQLLREKAIALMEELDNII-NVPRAK-LWTQAMFFACDVTDKSVTTSTDGVKSPFELW 310
            H    H  E + R TA+  G    G+   C  C  AK     +P  T  RA  K QRFFV++ G  +  SL G    +I  DDYTR+  V F+K KSD   A    + +       S +  VR+DNGG+F EGEF     +  I  E TP  +P+YNGVAERAL L+++ AIA   +   +    P  + LW +A+ ++C+  + + TTS    KSP+E+W
Sbjct:  312 HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 532          
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.310e-29
Identity = 83/225 (36.89%), Postives = 117/225 (52.00%), Query Frame = 0
Query:   98 HRMLAHPSEDITRKTAEIMGIGTTGQWGACEACFQAKAKRYAVPKTTDERASVKGQRFFVDVCGPMKHLSLSG----IIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYTT---PQELSIKCVRTDNGGKF-EGEFQYELDRRSITHEHTPPDTPQYNGVAERALQLLREKAIALMEELDNII----NVPRAKLWTQAMFFACDVTDKSVTTSTDGVKSPFELW 310
            H    H  E + R TA+  G    G+   C  C  AK     +P  T  RA  K QR FVD+ G  +  SL G    +I  DDYTR+  V F+K KSD   A    +A+      P ++ +  VR+DNGG+F EGEF     +  I  E TP  +P+YNGVAERAL L+++ A+A   +   +     N P   LW +A+ ++C+  + + TTS    KSP+E+W
Sbjct:  514 HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 734          
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.340e-29
Identity = 83/225 (36.89%), Postives = 117/225 (52.00%), Query Frame = 0
Query:   98 HRMLAHPSEDITRKTAEIMGIGTTGQWGACEACFQAKAKRYAVPKTTDERASVKGQRFFVDVCGPMKHLSLSG----IIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYTT---PQELSIKCVRTDNGGKF-EGEFQYELDRRSITHEHTPPDTPQYNGVAERALQLLREKAIALMEELDNII----NVPRAKLWTQAMFFACDVTDKSVTTSTDGVKSPFELW 310
            H    H  E + R TA+  G    G+   C  C  AK     +P  T  RA  K QR FVD+ G  +  SL G    +I  DDYTR+  V F+K KSD   A    +A+      P ++ +  VR+DNGG+F EGEF     +  I  E TP  +P+YNGVAERAL L+++ A+A   +   +     N P   LW +A+ ++C+  + + TTS    KSP+E+W
Sbjct:  527 HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 747          
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.360e-29
Identity = 83/225 (36.89%), Postives = 117/225 (52.00%), Query Frame = 0
Query:   98 HRMLAHPSEDITRKTAEIMGIGTTGQWGACEACFQAKAKRYAVPKTTDERASVKGQRFFVDVCGPMKHLSLSG----IIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYTT---PQELSIKCVRTDNGGKF-EGEFQYELDRRSITHEHTPPDTPQYNGVAERALQLLREKAIALMEELDNII----NVPRAKLWTQAMFFACDVTDKSVTTSTDGVKSPFELW 310
            H    H  E + R TA+  G    G+   C  C  AK     +P  T  RA  K QR FVD+ G  +  SL G    +I  DDYTR+  V F+K KSD   A    +A+      P ++ +  VR+DNGG+F EGEF     +  I  E TP  +P+YNGVAERAL L+++ A+A   +   +     N P   LW +A+ ++C+  + + TTS    KSP+E+W
Sbjct:  670 HCAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 890          
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 4.450e-29
Identity = 82/220 (37.27%), Postives = 116/220 (52.73%), Query Frame = 0
Query:  103 HPSEDITRKTAEIMGIGTTGQWGACEACFQAKAKRYAVPKTTDERASVKGQRFFVDVCGPMKHLSLSG----IIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYTT---PQELSIKCVRTDNGGKF-EGEFQYELDRRSITHEHTPPDTPQYNGVAERALQLLREKAIALMEELDNII----NVPRAKLWTQAMFFACDVTDKSVTTSTDGVKSPFELW 310
            H  E + R TA+  G    G+   C  C  AK     +P  T  RA  K QR FVD+ G  +  SL G    +I  DDYTR+  V F+K KSD   A    +A+      P ++ +  VR+DNGG+F EGEF     +  I  E TP  +P+YNGVAERAL L+++ A+A   +   +     N P   LW +A+ ++C+  + + TTS    KSP+E+W
Sbjct:  684 HSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 899          
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Match: B1PJ47_PHATR (Gag-pol polyprotein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B1PJ47_PHATR)

HSP 1 Score: 127 bits (319), Expect = 6.040e-29
Identity = 80/216 (37.04%), Postives = 118/216 (54.63%), Query Frame = 0
Query:   98 HRMLAHPSEDITRKTAEIMGIGTTGQWGACEACFQAKAKRYAVPKTTDERASVKGQRFFVDVCGPMKHLSLSG---IIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYTTPQELSIKCVRTDNGGKFEGEFQYELDRRSITHEHTPPDTPQYNGVAERALQLLREKAIALMEELDNIINVPRAKLWTQAMFFACDVTDKSVTTSTDGVKSPFELW 310
            H  L H  E + +KT +   I  TG+  +CE C  AKAK+ +V KTT+ RA   G+R FVD+ GP     L     I  VDD TR   + FVK++SD +  L   +       +   K +R DN G+ +   +   D++ +T E T PDTPQ NGV ER + +L+++A A+M   D +    RA LW +A+  A D+ + S+ T +D  KSP +L+
Sbjct:  573 HDKLGHKGEVLLKKTLKHHSIKVTGELQSCEGCCLAKAKQKSVSKTTNIRAKSPGERLFVDMSGPFTATILGSRYQIQVVDDATRKGFIGFVKKRSDLSQWLEENVLSKLEGMQKQTKYLRADNAGENKNPLEKLCDKKGMTLELTAPDTPQQNGVVERRIAVLQQRANAMMMAAD-LTPEARALLWAEALNTANDLENISLNTMSD--KSPDKLF 785          
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 2.190e-27
Identity = 80/225 (35.56%), Postives = 116/225 (51.56%), Query Frame = 0
Query:   98 HRMLAHPSEDITRKTAEIMGIGTTGQWGACEACFQAKAKRYAVPKTTDERASVKGQRFFVDVCGPMKHLSLSG----IIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYTT---PQELSIKCVRTDNGGKF-EGEFQYELDRRSITHEHTPPDTPQYNGVAERALQLLREKAIALMEELDNII----NVPRAKLWTQAMFFACDVTDKSVTTSTDGVKSPFELW 310
            H    H  E + R TA+  G    G+   C  C  AK     +P  T  RA+ + QR F+D+ G  +  SL G    +I  D YTR+  V F+K KSD   A    +A+      P ++ +  VR+DNGG+F EGEF     +  I  E TP  +P+YNGVAERAL L+++ A+A   +   +     N P    W +A+ +AC+  + + TTS    KSP+E+W
Sbjct:  540 HYAHGHSHEVLLRTTAKQQGTTLVGELRECLGCSTAKGLSKLIPNKTSTRAAKRLQRVFMDLSGKARVQSLVGKWYTLIVKDVYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGTPNYP--SFWAEAIAWACNALNCTSTTSNPEKKSPYEMW 760          
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 2.820e-27
Identity = 75/201 (37.31%), Postives = 107/201 (53.23%), Query Frame = 0
Query:  122 GQWGACEACFQAKAKRYAVPKTTDERASVKGQRFFVDVCGPMKHLSLSG----IIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYTT---PQELSIKCVRTDNGGKF-EGEFQYELDRRSITHEHTPPDTPQYNGVAERALQLLREKAIALMEELDNII----NVPRAKLWTQAMFFACDVTDKSVTTSTDGVKSPFELW 310
            G+   C  C  AK     +P  T  RA  K QR FVD+ G  +  SL G    +I  DDYTR+  V F+K KSD   A    +A+      P ++ +  VR+DNGG+F EGEF     +  I  E TP  +P+Y+GVAERAL L+ + A+A   +   +     N P   LW +A+ ++C+  + + TTS    KSP+E+W
Sbjct:    4 GELWECLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMV--VRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTTSNPEKKSPYEMW 200          
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 2.550e-26
Identity = 82/223 (36.77%), Postives = 114/223 (51.12%), Query Frame = 0
Query:   98 HRMLAHPSEDITRKTAEIMGIGTT-GQWGACEACFQAKAKRYAVPKTTDERASVKGQRFFVDVCGPMKHLSLSG----IIFVDDYTRFKVVKFVKRKSDTTAALLSLIADYTT---PQELSIKCVRTDNGGKFEGEFQYELDRRSITHEHTPPDTPQYNGVAERALQLLREKAIALMEELDNII-NVPRAK-LWTQAMFFACDVTDKSVTTSTDGVKSPFELW 310
            H    H  E + R TAE  G+  T G    C  C  +KA+   V K T  RA     R ++D+ G MK  S+ G    +I  DD++R+  V F+K KSD        +ADY T   P E  I   R D GG+F+G+F     R  I  E TPP TP+YNGVAERAL L+ + A+A   +   +  + P    LW +A+  AC   + + T S +G KS +E++
Sbjct:  645 HLAHGHAHETLLRITAEQQGVQLTDGPLLPCLGCSMSKAQVKPVQKCTSTRAVQNFFRVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFI--ARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTATKSNEGDKSAYEMF 865          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13772.2650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE8.670e-3238.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K1N9_9PHAE2.270e-2937.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZQ8_9PHAE3.310e-2936.89Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.340e-2936.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE3.360e-2936.89Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JTI6_9PHAE4.450e-2937.27Integrase catalytic domain-containing protein n=1 ... [more]
B1PJ47_PHATR6.040e-2937.04Gag-pol polyprotein n=1 Tax=Phaeodactylum tricornu... [more]
A0A6H5JXF7_9PHAE2.190e-2735.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7U9_9PHAE2.820e-2737.31Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAQ2_9PHAE2.550e-2636.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 255..275
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 96..268
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 170..260
e-value: 3.6E-11
score: 43.3
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 137..311
score: 16.672
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 141..311
e-value: 1.0E-17
score: 66.0
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 96..268
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 153..311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13772contigH-elongata_contig13772:4145..5248 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13772.2650.1mRNA_H-elongata_contig13772.2650.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13772 2058..5269 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13772.2650.1 ID=prot_H-elongata_contig13772.2650.1|Name=mRNA_H-elongata_contig13772.2650.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=312bp
MSHTRAGMSAYKKASPGMTVEITDGNTLPVDGFGRIKIDLDQPGHTTKMV
KMDDVAYVPGISRNLRSTLKAVEQWKKPLIYYRDKAVLGFPGSESLVHRM
LAHPSEDITRKTAEIMGIGTTGQWGACEACFQAKAKRYAVPKTTDERASV
KGQRFFVDVCGPMKHLSLSGIIFVDDYTRFKVVKFVKRKSDTTAALLSLI
ADYTTPQELSIKCVRTDNGGKFEGEFQYELDRRSITHEHTPPDTPQYNGV
AERALQLLREKAIALMEELDNIINVPRAKLWTQAMFFACDVTDKSVTTST
DGVKSPFELWF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf