mRNA_H-elongata_contig103102.261.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103102.261.1
Unique NamemRNA_H-elongata_contig103102.261.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: D8LKA1_ECTSI (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA1_ECTSI)

HSP 1 Score: 198 bits (504), Expect = 1.730e-57
Identity = 110/149 (73.83%), Postives = 115/149 (77.18%), Query Frame = 1
Query:    1 AANQERGKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKYKAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVASRAMAKTPA 447
            AAN E G K  AHVVPDAG +FAVRVHDFRLYH+VCRDVI RWMYPLVPDNA+TGGVQTQYTY R C YKAPGVNLPRSVRLGNGVVIGADVTVGEN VIERSVI    XXXXXXX                 +EG +VASRAM KTPA
Sbjct:  153 AANHELGNKILAHVVPDAGASFAVRVHDFRLYHEVCRDVILRWMYPLVPDNATTGGVQTQYTYSRVCNYKAPGVNLPRSVRLGNGVVIGADVTVGENTVIERSVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEGAIVASRAMTKTPA 301          
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A835YX04_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX04_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.610e-21
Identity = 67/138 (48.55%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    4 ANQERGKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNA--STGGVQTQYTY----------ERGCKYKAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAE 381
            AN E G K  AH+V      ++ RV D RLYH V RD+I RW YPLVPDNA  ST                   +RG  Y+  GV LPRSV +G G VIG DV VGE AV+         XXXXXXX+ DSY+W GAE
Sbjct:  254 ANVELGNKIMAHIV--GPREYSARVEDLRLYHAVSRDIIRRWTYPLVPDNAVSSTSXXXXXXXXXXXSACALRAQRGYVYRHRGVTLPRSVSVGAGTVIGPDVAVGEGAVLSGCXXXXXXXXXXXXXVTDSYVWEGAE 389          
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A0D7BDJ9_9AGAR (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Cylindrobasidium torrendii FP15055 ss-10 TaxID=1314674 RepID=A0A0D7BDJ9_9AGAR)

HSP 1 Score: 89.4 bits (220), Expect = 6.890e-18
Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 1
Query:   64 FAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKY--KAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVASRAMAK 438
            +A RV D R Y  V +D+++RW +PLVPDN   G   T Y + RG KY  K   V L R+ ++GN  +IG    + E+  I  SVIG  C       IVDSYL+ G  +G    IE +++  R + K
Sbjct:  273 YAARVKDTRSYESVSKDILSRWTFPLVPDNNYPGS--TSYEHIRGNKYIAKDSSVTLGRTSKVGNNTLIGPSTNISEDVHITSSVIGQDCIIGAGSVIVDSYLFDGVVVGPECVIEKSIIGERVVIK 397          
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: UPI001B87B174 (nucleotide-diphospho-sugar transferase n=1 Tax=Suillus paluster TaxID=48578 RepID=UPI001B87B174)

HSP 1 Score: 87.0 bits (214), Expect = 4.470e-17
Identity = 47/127 (37.01%), Postives = 71/127 (55.91%), Query Frame = 1
Query:   64 FAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKY--KAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVASRAMAK 438
            +A RV D R Y  V +D+++RW +PLVPD+   GG    Y + RG KY  K   V L R+ ++GN  +IG+   + +NA +  SV+G GC       + +SYL+ GA IG    +E +++ S    K
Sbjct:  277 YAARVRDTRSYDSVSKDILSRWTFPLVPDDNHPGG--HSYEHLRGNKYIAKDNSVTLSRTCKIGNNTLIGSKSQIADNAQVTASVLGQGCTVGAGSIVRNSYLFDGAIIGPNCVVEHSIIGSGVQIK 401          
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A6A6QTR6_9PEZI (Mannose-1-phosphate guanyltransferase n=1 Tax=Lophium mytilinum TaxID=390894 RepID=A0A6A6QTR6_9PEZI)

HSP 1 Score: 87.0 bits (214), Expect = 4.690e-17
Identity = 52/135 (38.52%), Postives = 73/135 (54.07%), Query Frame = 1
Query:   19 GKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKYKAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVAS 423
            GK    H+V D    +A RV +   Y  +C+D+++RW YPL PD+    G    Y  ++G  YK  GV L RS  +    VIG D +VGE  VI  S+     XXXXX  I  +Y+W    IGD +++E  ++AS
Sbjct:  856 GKTIHTHIVTDH---YAARVRNLHAYDSICKDIVSRWAYPLCPDSNLLRG--QSYRLQKGNIYKEQGVILARSCHINRKTVIGRDTSVGEGTVISNSIXXXXXXXXXXVSIEGAYIWDNTRIGDSSTVERAILAS 985          
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A4V6TNL6_WALIC (eIF-2B GDP-GTP exchange factor subunit epsilon n=2 Tax=Wallemia ichthyophaga TaxID=245174 RepID=A0A4V6TNL6_WALIC)

HSP 1 Score: 85.9 bits (211), Expect = 1.160e-16
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   19 GKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKYKAP-GVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVA 420
            GK    H + D    +A RV D R Y  + +D+I+RW YP+VPD    G    +  + RG +Y    GVN+  S R+G   V+G+  TV  ++ ++RSV+G G        +  SY+W    IG G SI  ++VA
Sbjct:  557 GKTIHVHAIEDEEGGYAARVMDSRSYDAISQDIISRWTYPMVPDECMPGS--DRLLHHRGHRYYGKQGVNVAESARVGVCSVLGSHCTVAAHSTLDRSVLGQGVAVGENTQLSHSYIWNKTSIGSGCSIYQSIVA 689          
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A1Y2J8Z8_PYCCO (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Trametes coccinea BRFM310 TaxID=1353009 RepID=A0A1Y2J8Z8_PYCCO)

HSP 1 Score: 84.7 bits (208), Expect = 2.880e-16
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   64 FAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKY--KAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVASR 426
            +A RV D R Y  V +D+++RW +PLVPD+   GG    Y + RG KY  K   V L R+ ++GN  +IG+  T+  NA +  SVIG  C       + ++Y++    IG G  +EG++V +R
Sbjct:  275 YAARVADTRSYDSVSKDILSRWTFPLVPDDNHPGG--HAYEHLRGNKYIAKDNSVVLSRTCKVGNNTLIGSHTTIEANATVHASVIGQRCTIGPGAVLRNAYIFDDTHIGAGCVVEGSIVGAR 395          
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: R9AFZ1_WALI9 (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Wallemia ichthyophaga (strain EXF-994 / CBS 113033) TaxID=1299270 RepID=R9AFZ1_WALI9)

HSP 1 Score: 84.0 bits (206), Expect = 5.240e-16
Identity = 47/135 (34.81%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   19 GKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKYKAP-GVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVVA 420
            GK    H + D    +A RV D R Y  + +D+I+RW YP+VPD    G    +  + RG +Y    GV++  S R+G   V+G+  TV  ++ ++RSV+G G        +  SY+W    IG G SI  ++VA
Sbjct:  262 GKTIHVHAIEDEEGGYAARVMDSRSYDAISQDIISRWTYPMVPDECMPGS--DRLLHHRGHRYYGKQGVDVAESARVGVCSVLGSHCTVAAHSTLDRSVLGQGVAVGENTQLSHSYIWNKTSIGSGCSIYQSIVA 394          
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: A0A2R5GM02_9STRA (eIF-2B GDP-GTP exchange factor subunit epsilon n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GM02_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.260e-16
Identity = 46/107 (42.99%), Postives = 61/107 (57.01%), Query Frame = 1
Query:    7 NQERGKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKYKAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGC 327
            N E G +  AH +    + +A RV  FR Y  + RDV+ RW+YPLVPD A+    +T Y  ERG +Y+  GV + RS  +G   VIGA   + E A I  SV+GD C
Sbjct:  266 NHELGYRIHAHELTSQ-SDYACRVRCFRTYDAISRDVVRRWLYPLVPD-ANWASEETAYALERGLRYRDEGVRVGRSSVIGQSCVIGAGSEIDEGATITTSVLGDHC 370          
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Match: UPI002007E904 (nucleotide-diphospho-sugar transferase n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI002007E904)

HSP 1 Score: 83.6 bits (205), Expect = 7.280e-16
Identity = 45/120 (37.50%), Postives = 68/120 (56.67%), Query Frame = 1
Query:   64 FAVRVHDFRLYHQVCRDVITRWMYPLVPDNASTGGVQTQYTYERGCKY--KAPGVNLPRSVRLGNGVVIGADVTVGENAVIERSVIGDGCXXXXXXXIVDSYLWAGAEIGDGASIEGTVV 417
            +A RV D R Y  V +D+++RW +PLVPD+   GG    Y + RG KY  K   V L R+ ++GN  +IGA  TV  +A +  SV+G  C       + D+Y++    +G G  +EG++V
Sbjct:  275 YAARVADTRSYDAVSKDILSRWTFPLVPDDNHPGG--HLYEHLRGNKYIAKDNSVTLSRTCKVGNNTLIGAGSTVAAHATVHASVVGQRCTIGPGAVLRDAYVFDDTHVGAGCVVEGSIV 392          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103102.261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKA1_ECTSI1.730e-5773.83eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
A0A835YX04_9STRA7.610e-2148.55eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A0D7BDJ9_9AGAR6.890e-1839.37eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
UPI001B87B1744.470e-1737.01nucleotide-diphospho-sugar transferase n=1 Tax=Sui... [more]
A0A6A6QTR6_9PEZI4.690e-1738.52Mannose-1-phosphate guanyltransferase n=1 Tax=Loph... [more]
A0A4V6TNL6_WALIC1.160e-1635.56eIF-2B GDP-GTP exchange factor subunit epsilon n=2... [more]
A0A1Y2J8Z8_PYCCO2.880e-1637.40eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
R9AFZ1_WALI95.240e-1634.81eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
A0A2R5GM02_9STRA7.260e-1642.99eIF-2B GDP-GTP exchange factor subunit epsilon n=1... [more]
UPI002007E9047.280e-1637.50nucleotide-diphospho-sugar transferase n=1 Tax=Epi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103102contigH-elongata_contig103102:712..2320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue1.9e-48
Seed eggNOG ortholog2880.D8LKA1
Preferred nameEIF2B5
KEGG koko:K03240,ko:K03859
KEGG ReactionR05916
KEGG Pathwayko00563,ko01100,ko03013,map00563,map01100,map03013
GOsGO:0000003,GO:0001541,GO:0002181,GO:0002183,GO:0002253,GO:0002376,GO:0002429,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007272,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0008135,GO:0008150,GO:0008152,GO:0008366,GO:0008406,GO:0008585,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010001,GO:0010033,GO:0010035,GO:0010038,GO:0010226,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010941,GO:0010942,GO:0014002,GO:0014003,GO:0019222,GO:0019538,GO:0019899,GO:0021537,GO:0021543,GO:0021761,GO:0021766,GO:0021782,GO:0022008,GO:0022414,GO:0023052,GO:0030154,GO:0030900,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0032045,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034248,GO:0034250,GO:0034284,GO:0034641,GO:0034645,GO:0034976,GO:0042063,GO:0042221,GO:0042552,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045137,GO:0045727,GO:0045948,GO:0046545,GO:0046660,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048708,GO:0048709,GO:0048731,GO:0048856,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050851,GO:0050852,GO:0050896,GO:0051020,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051716,GO:0060255,GO:0060322,GO:0061458,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:2000112
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1208@1,KOG1461@2759
Ec32 ortholog descriptioneukaryotic translation initiation factor 2B epsilon subunit
Ec32 orthologEc-01_009500.1
COG Functional cat.JM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Hectar predicted targeting categoryother localisation
Exons3
Model size447
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103102.261.1prot_H-elongata_contig103102.261.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103102 712..2320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929567.3238392-CDS-H-elongata_contig103102:711..9161622929567.3238392-CDS-H-elongata_contig103102:711..916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103102 712..916 -
1691679073.4109967-CDS-H-elongata_contig103102:711..9161691679073.4109967-CDS-H-elongata_contig103102:711..916Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103102 712..916 -
1622929567.33767-CDS-H-elongata_contig103102:1240..14291622929567.33767-CDS-H-elongata_contig103102:1240..1429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103102 1241..1429 -
1691679073.4285617-CDS-H-elongata_contig103102:1240..14291691679073.4285617-CDS-H-elongata_contig103102:1240..1429Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103102 1241..1429 -
1622929567.3536043-CDS-H-elongata_contig103102:2267..23201622929567.3536043-CDS-H-elongata_contig103102:2267..2320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103102 2268..2320 -
1691679073.438346-CDS-H-elongata_contig103102:2267..23201691679073.438346-CDS-H-elongata_contig103102:2267..2320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103102 2268..2320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103102.261.1

>prot_H-elongata_contig103102.261.1 ID=prot_H-elongata_contig103102.261.1|Name=mRNA_H-elongata_contig103102.261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=149bp
AANQERGKKNRAHVVPDAGTTFAVRVHDFRLYHQVCRDVITRWMYPLVPD
NASTGGVQTQYTYERGCKYKAPGVNLPRSVRLGNGVVIGADVTVGENAVI
ERSVIGDGCRIGVGAKIVDSYLWAGAEIGDGASIEGTVVASRAMAKTPA
back to top

mRNA from alignment at H-elongata_contig103102:712..2320-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103102.261.1 ID=mRNA_H-elongata_contig103102.261.1|Name=mRNA_H-elongata_contig103102.261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1609bp|location=Sequence derived from alignment at H-elongata_contig103102:712..2320- (Himanthalia elongata Himel1 dioecious)
GCGGCGAATCAAGAACGCGGAAAAAAGAACCGGGCGCACGTGGTCCCCGA TGCGTAAGAGAACCCCCCCCCCCCCCGCGCGCGTGCGAGATATATAATCG AGCAAATATACTGCCCCAGGGGTTCGATCGAACCAGACATTTTTCGATGA GGGTTTGATGCAGGTTGGGCTCATGGAAACGAAATCCTAATTAAATATTT ATGTCTGTCTGTGTGTTTAGTTTGTTGAGGTATTTTGCCCCAGTGCCATT TTGGCTTGGTTATCCTAGTGCTGGACTCGCGGGTGGTGTGTGTGTGTGTG TGCGTGTGTGCGAGAGCGCCGTGATGTGTCAGCCGACCAAAAGGATGATG ACTTCCCTCAGCCCTTCTCCACCCCTCCCGCGTACTCCATCTCTCCCTGC CCCTCGGCTTTTCTCGATTTTGCCCCGAGGAGATAGGGAGGGGGGGAAGG GGAGGCGAAAGCGGAGAAGGTCCGTGCGGATAAAATGGATACCTGAGCGC TCACTTTCGCACTCACGCACGCATCGCTCGGCAAGACAGGATGATACTAG CCTGGCGTGCGTAAATTAATTTTGACGCGACATCAAGTCTCTGTTCCTCC CACCACTCAGTCTCTACCAAGCAGACCTCCCATGGTGTCTCACTGACTCA ATGCTTGCAGTGATTGGCCGCCGGACTCCCATTCCGAGCGTACATCAAAC CGTAATCGACCGAAGCCTTCGACTATTCCGCCTCGGGATTTTCCACCGTT GAGGCCTTACTTCCTCACATCCCATCCGCGTCCTCTCCTGCCTCCCCGAT TCGATCGATCGTGCCAACGTCTGAACCTCCCCTGGGGTGATAACGCGTGA TGTTTCTGTTGGGGTGATAACGCGGGGTGTACTCTACGTAGAGGCACCAC CTTTGCGGTGCGAGTGCACGACTTCCGCCTCTACCACCAGGTCTGCCGCG ACGTGATCACGAGATGGATGTATCCCCTTGTTCCCGACAACGCCAGCACG GGGGGAGTGCAAACCCAATATACGTACGAGCGGGGCTGCAAGTACAAGGC CCCCGGGGTCAACCTCCCCAGATCGGTCAGGTAAAACACAGCGCCCGATT CTTCCTCCACACCATACCTCTCTCCCTCCCCCCCCTAAAAAACAAAATGT GATCACTACGCAACCGCGGTAGTCGGGTAGGCACGGGGCAAAAGGAGTTG AAAATTCTCGCCTTACCCGTGAATCAATGGAACTCCAATGGGCGTTTTCT CTACATCAAAAACTCGTCGCTCTTACGAGCCGCCGTAGCAATGTGTGTCC GACTTCATGTCATCACCCGGTCTGCCGCGGTGTGTCGATACCACACCTAC CTATATCCTATATCGCGGTGCGCTACATGATGGACCGCGGCATCACATGC GCAGGCTTGGGAACGGCGTGGTGATCGGTGCGGACGTTACAGTGGGTGAA AATGCGGTGATCGAGCGCAGCGTCATCGGGGATGGTTGCCGGATAGGCGT CGGCGCGAAGATCGTGGACTCCTACTTGTGGGCCGGAGCCGAAATTGGGG ACGGTGCTTCGATTGAGGGAACGGTCGTGGCCTCCCGGGCGATGGCCAAG ACTCCAGCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig103102:712..2320-

>mRNA_H-elongata_contig103102.261.1 ID=mRNA_H-elongata_contig103102.261.1|Name=mRNA_H-elongata_contig103102.261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=894bp|location=Sequence derived from alignment at H-elongata_contig103102:712..2320- (Himanthalia elongata Himel1 dioecious)
GCGGCGAATCAAGAACGCGGAAAAAAGAACCGGGCGCACGTGGTCCCCGA
TGCGCGGCGAATCAAGAACGCGGAAAAAAGAACCGGGCGCACGTGGTCCC
CGATGCAGGCACCACCTTTGCGGTGCGAGTGCACGACTTCCGCCTCTACC
ACCAGGTCTGCCGCGACGTGATCACGAGATGGATGTATCCCCTTGTTCCC
GACAACGCCAGCACGGGGGGAGTGCAAACCCAATATACGTACGAGCGGGG
CTGCAAGTACAAGGCCCCCGGGGTCAACCTCCCCAGATCGGTCAGAGGCA
CCACCTTTGCGGTGCGAGTGCACGACTTCCGCCTCTACCACCAGGTCTGC
CGCGACGTGATCACGAGATGGATGTATCCCCTTGTTCCCGACAACGCCAG
CACGGGGGGAGTGCAAACCCAATATACGTACGAGCGGGGCTGCAAGTACA
AGGCCCCCGGGGTCAACCTCCCCAGATCGGTCAGGCTTGGGAACGGCGTG
GTGATCGGTGCGGACGTTACAGTGGGTGAAAATGCGGTGATCGAGCGCAG
CGTCATCGGGGATGGTTGCCGGATAGGCGTCGGCGCGAAGATCGTGGACT
CCTACTTGTGGGCCGGAGCCGAAATTGGGGACGGTGCTTCGATTGAGGGA
ACGGTCGTGGCCTCCCGGGCGATGGCCAAGACTCCAGCAGCTTGGGAACG
GCGTGGTGATCGGTGCGGACGTTACAGTGGGTGAAAATGCGGTGATCGAG
CGCAGCGTCATCGGGGATGGTTGCCGGATAGGCGTCGGCGCGAAGATCGT
GGACTCCTACTTGTGGGCCGGAGCCGAAATTGGGGACGGTGCTTCGATTG
AGGGAACGGTCGTGGCCTCCCGGGCGATGGCCAAGACTCCAGCA
back to top