prot_H-elongata_contig13680.2592.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13680.2592.1
Unique Nameprot_H-elongata_contig13680.2592.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length106
Homology
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Match: A0A6H5JEL3_9PHAE (Pre-mRNA-processing factor 19 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEL3_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 6.670e-53
Identity = 85/103 (82.52%), Postives = 100/103 (97.09%), Query Frame = 0
Query:    2 VSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEIRSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQALYQ 104
            +SGQTPETPV+SKKSG++YEKRLI+KYIDAEGKCPATGEELTADDL+++RS+ AVKPRP EAASIPGLL+ +QNEWDDLMLET++LKQHL+QTRQELSQ+LYQ
Sbjct:    5 ISGQTPETPVVSKKSGHIYEKRLIVKYIDAEGKCPATGEELTADDLLDVRSEGAVKPRPAEAASIPGLLSFLQNEWDDLMLETYTLKQHLNQTRQELSQSLYQ 107          
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Match: A0A835YI40_9STRA (Pre-mRNA-processing factor 19 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI40_9STRA)

HSP 1 Score: 159 bits (402), Expect = 2.150e-44
Identity = 73/103 (70.87%), Postives = 91/103 (88.35%), Query Frame = 0
Query:    2 VSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEIRSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQALYQ 104
            +SG+ PE PV+S+K+G+L+E+RLI KYIDAEGKCP TGE L  DDL++++S+K V+PRP  A SIPGLLA+MQNEWDDLM+ET++LKQHLD TRQELSQALYQ
Sbjct:    5 ISGEVPEVPVVSRKTGHLFERRLIEKYIDAEGKCPITGEPLGVDDLMDVKSNKVVRPRPATATSIPGLLALMQNEWDDLMVETYTLKQHLDTTRQELSQALYQ 107          
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Match: A0A7S1C5N2_9STRA (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5N2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.450e-39
Identity = 62/103 (60.19%), Postives = 83/103 (80.58%), Query Frame = 0
Query:    2 VSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEIRSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQALYQ 104
            +SG  PE PV+S+ +G+LYEKRLI K I A G+CP + EE+ ADDL+++++ K++KPRP  A S+PGLL+I+Q+EWD  MLE  +L+QHLD TRQELSQALYQ
Sbjct:   12 ISGTVPEEPVVSRTTGHLYEKRLITKAIAATGRCPVSNEEIDADDLVDVKAAKSIKPRPASATSVPGLLSILQDEWDATMLEVATLRQHLDSTRQELSQALYQ 114          
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Match: A0A6V1T7M8_HETAK (Pre-mRNA-processing factor 19 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T7M8_HETAK)

HSP 1 Score: 144 bits (364), Expect = 7.580e-39
Identity = 66/104 (63.46%), Postives = 86/104 (82.69%), Query Frame = 0
Query:    1 TVSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEIRSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQALYQ 104
            ++SG+ P+ PV+S KSG+L+EK LI KY+ +E  CP TG+EL+ +DL +++ +KAVKPRP+ A SIPGLL + QNEWDDLMLETH+LK HLD TRQ+LSQALYQ
Sbjct:    4 SISGEVPKVPVISVKSGHLFEKHLIEKYLKSESTCPVTGDELSIEDLKDVKVNKAVKPRPLTATSIPGLLNLFQNEWDDLMLETHTLKSHLDSTRQQLSQALYQ 107          
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Match: UPI00051C4BE2 (pre-mRNA-processing factor 19 homolog 1-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051C4BE2)

HSP 1 Score: 134 bits (338), Expect = 8.740e-39
Identity = 65/106 (61.32%), Postives = 82/106 (77.36%), Query Frame = 0
Query:    1 TVSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEIRSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQALYQVR 106
            ++SG+ PE PV+SKKSG L+EKRLI ++I   GKCP TGE LTADD+I +++ K VKPRPV+AASIPG+L + Q EWD LML   +L+Q L   RQELS ALYQV+
Sbjct:    4 SISGEVPEDPVVSKKSGLLFEKRLIERHISDYGKCPVTGEPLTADDIIPVKTGKIVKPRPVQAASIPGMLGMFQIEWDGLMLSNFALEQQLHTARQELSHALYQVK 109          
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Match: D8M7F8_BLAHO (Pre-mRNA-processing factor 19 n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M7F8_BLAHO)

HSP 1 Score: 141 bits (355), Expect = 1.100e-37
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 0
Query:    2 VSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEIRSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQALYQ 104
            +SG+ P  PV+SKK+GY+YEK LI KYI+AEGKCP TGEEL   DLI++++   VKP+P  A SIPGLL  +QNEWD +MLE+ +LK+HL   RQELSQALYQ
Sbjct:    5 ISGEVPHEPVVSKKTGYIYEKSLITKYIEAEGKCPITGEELDLSDLIDVKTQPLVKPKPTPATSIPGLLVSLQNEWDSMMLESFTLKKHLQAVRQELSQALYQ 107          
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Match: A0A444FYR8_ENSVE (Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444FYR8_ENSVE)

HSP 1 Score: 131 bits (330), Expect = 1.360e-37
Identity = 63/103 (61.17%), Postives = 80/103 (77.67%), Query Frame = 0
Query:    2 VSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEIRSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQALYQ 104
            VSG+ PE PV+SKKSG L+E+RLI  +I + GKCP T E+LT DDL+ ++++K VKPRP++AASIPGLL + QNEWD LML   +L+Q L   RQELS ALYQ
Sbjct:   12 VSGEVPEEPVVSKKSGLLFERRLIEHHITSHGKCPVTKEDLTTDDLVLVKTNKVVKPRPLQAASIPGLLGMFQNEWDALMLSNFALEQQLHTARQELSHALYQ 114          
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Match: A0A6U8B0X1_9EUGL (Pre-mRNA-processing factor 19 n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8B0X1_9EUGL)

HSP 1 Score: 140 bits (354), Expect = 2.170e-37
Identity = 64/103 (62.14%), Postives = 83/103 (80.58%), Query Frame = 0
Query:    2 VSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEIRSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQALYQ 104
            VSG +PE PV+S+K+G+L+EKR+I KYI   GKCP T +ELT DDL+ + S K  KPRP +A+SIPGLL++ QNEWD LM+E++++KQHLD  RQELS ALYQ
Sbjct:   10 VSGISPEEPVVSRKTGHLFEKRIIEKYIQQHGKCPVTDQELTMDDLLSVESSKTPKPRPAQASSIPGLLSLFQNEWDSLMIESYTMKQHLDTVRQELSHALYQ 112          
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Match: A0A446ITD5_TRITD (Pre-mRNA-processing factor 19 n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446ITD5_TRITD)

HSP 1 Score: 130 bits (327), Expect = 3.550e-37
Identity = 60/103 (58.25%), Postives = 81/103 (78.64%), Query Frame = 0
Query:    2 VSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEIRSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQALYQ 104
            +SG+ P+ PV+SK+SG L+E+RLI +YI+  GKCP T EEL+ DD++ ++++K V+PRP++AASIPGLL I QNEWD LML   +L+Q L   RQELS ALYQ
Sbjct:    5 ISGEVPDEPVVSKRSGLLFERRLIERYIEDHGKCPVTKEELSMDDIVLVKTNKVVRPRPLQAASIPGLLGIFQNEWDALMLSNFALEQQLHTARQELSHALYQ 107          
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Match: A0A061S8V8_9CHLO (Pre-mRNA-processing factor 19 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8V8_9CHLO)

HSP 1 Score: 138 bits (348), Expect = 1.390e-36
Identity = 63/103 (61.17%), Postives = 86/103 (83.50%), Query Frame = 0
Query:    2 VSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEIRSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQALYQ 104
            +SG  PE PV+S+ SG+L+EKRLILK+++ + +CP TGEEL+ DDL++++++KAVKPR   A+SIPGLL + QNEWD LMLE+H+LKQ+L + RQELS ALYQ
Sbjct:    5 ISGHVPEEPVVSRSSGHLFEKRLILKHLETDPRCPVTGEELSKDDLLDLQTNKAVKPRTAPASSIPGLLGLFQNEWDALMLESHNLKQNLHKLRQELSHALYQ 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13680.2592.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEL3_9PHAE6.670e-5382.52Pre-mRNA-processing factor 19 n=2 Tax=Ectocarpus T... [more]
A0A835YI40_9STRA2.150e-4470.87Pre-mRNA-processing factor 19 n=1 Tax=Tribonema mi... [more]
A0A7S1C5N2_9STRA1.450e-3960.19Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=B... [more]
A0A6V1T7M8_HETAK7.580e-3963.46Pre-mRNA-processing factor 19 n=1 Tax=Heterosigma ... [more]
UPI00051C4BE28.740e-3961.32pre-mRNA-processing factor 19 homolog 1-like n=1 T... [more]
D8M7F8_BLAHO1.100e-3763.11Pre-mRNA-processing factor 19 n=1 Tax=Blastocystis... [more]
A0A444FYR8_ENSVE1.360e-3761.17Pre-mRNA-processing factor 19 (Fragment) n=1 Tax=E... [more]
A0A6U8B0X1_9EUGL2.170e-3762.14Pre-mRNA-processing factor 19 n=1 Tax=Eutreptiella... [more]
A0A446ITD5_TRITD3.550e-3758.25Pre-mRNA-processing factor 19 n=2 Tax=Triticum tur... [more]
A0A061S8V8_9CHLO1.390e-3661.17Pre-mRNA-processing factor 19 n=2 Tax=Tetraselmis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003613U box domainSMARTSM00504Ubox_2coord: 3..63
e-value: 2.8E-9
score: 46.8
IPR003613U box domainPROSITEPS51698U_BOXcoord: 1..67
score: 20.621
IPR013915Pre-mRNA-splicing factor 19PFAMPF08606Prp19coord: 63..104
e-value: 2.0E-20
score: 72.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..54
e-value: 4.5E-17
score: 63.3
IPR038959Pre-mRNA-processing factor 19PANTHERPTHR43995FAMILY NOT NAMEDcoord: 2..104
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 2..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13680contigH-elongata_contig13680:1423..2842 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13680.2592.1mRNA_H-elongata_contig13680.2592.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13680 1423..2842 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13680.2592.1 ID=prot_H-elongata_contig13680.2592.1|Name=mRNA_H-elongata_contig13680.2592.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
TVSGQTPETPVLSKKSGYLYEKRLILKYIDAEGKCPATGEELTADDLIEI
RSDKAVKPRPVEAASIPGLLAIMQNEWDDLMLETHSLKQHLDQTRQELSQ
ALYQVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR013915Pre-mRNA_splic_Prp19
IPR013083Znf_RING/FYVE/PHD
IPR038959Prp19