mRNA_H-elongata_contig103065.257.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103065.257.1
Unique NamemRNA_H-elongata_contig103065.257.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig103065.257.1 vs. uniprot
Match: D7G007_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G007_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 4.510e-29
Identity = 74/130 (56.92%), Postives = 90/130 (69.23%), Query Frame = 1 
Query:   25 LLVPGMLRCTFSAKSNRLSSLHLSFDPSLPARQLARAAMLQGRATASMAGMMAGLLGMGGTSAAGT-GAEGGGSPPGCTGAAASSRGLTSAEM-SGVPQEAFAGQEEGVLHSVLEDLLEGRVSSTLVHNP 408
            LLVPGML+ +FS KSNRL S+  SFDP++PARQLARAAMLQGRAT  MAGMMAG+LGMGG   +    A+GGG P      A+ S G       +      F GQ+EGVLHSVL+D+ E RVSST++ +P
Sbjct:  311 LLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMAAKGGGVPSAARDRASESSGAXXXXXXTAANPPPFVGQDEGVLHSVLQDIREWRVSSTVLDDP 440
[Close]
BLAST of mRNA_H-elongata_contig103065.257.1 vs. uniprot
Match: A0A6H5KRD8_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD8_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.560e-20
Identity = 54/80 (67.50%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:   13 RSQHLLVPGMLRCTFSAKSNRLSSLHLSFDPSLPARQLARAAMLQGRATASMAGMMAGLLGMGGTSAAGTGAEGGGSPPG 252
            RS  LLVPGML+ +FS KSNRL S+  SFDP++PARQLARAAMLQGRAT  MAGMMAG+LGMGG   +   A  GG  PG
Sbjct:  531 RSPQLLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMAAKGGGVPG 610
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103065.257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G007_ECTSI4.510e-2956.92BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KRD8_9PHAE3.560e-2067.50BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103065contigH-elongata_contig103065:260..1227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue1e-24
Seed eggNOG ortholog2880.D7G007
EggNOG OGs2EF6K@1,2SKEU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_003405.1
Exons2
Model size423
Cds size423
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929566.584615-CDS-H-elongata_contig103065:259..4101622929566.584615-CDS-H-elongata_contig103065:259..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103065 260..410 -
1691679073.3121681-CDS-H-elongata_contig103065:259..4101691679073.3121681-CDS-H-elongata_contig103065:259..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103065 260..410 -
1622929566.5962665-CDS-H-elongata_contig103065:955..12271622929566.5962665-CDS-H-elongata_contig103065:955..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103065 956..1227 -
1691679073.3211415-CDS-H-elongata_contig103065:955..12271691679073.3211415-CDS-H-elongata_contig103065:955..1227Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103065 956..1227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103065.257.1prot_H-elongata_contig103065.257.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103065 260..1227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103065.257.1

>prot_H-elongata_contig103065.257.1 ID=prot_H-elongata_contig103065.257.1|Name=mRNA_H-elongata_contig103065.257.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MLKHRSQHLLVPGMLRCTFSAKSNRLSSLHLSFDPSLPARQLARAAMLQG
RATASMAGMMAGLLGMGGTSAAGTGAEGGGSPPGCTGAAASSRGLTSAEM
SGVPQEAFAGQEEGVLHSVLEDLLEGRVSSTLVHNPTHGES
back to top

mRNA from alignment at H-elongata_contig103065:260..1227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103065.257.1 ID=mRNA_H-elongata_contig103065.257.1|Name=mRNA_H-elongata_contig103065.257.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=968bp|location=Sequence derived from alignment at H-elongata_contig103065:260..1227- (Himanthalia elongata Himel1 dioecious)
ATGCTGAAACACAGGTCGCAGCACCTGCTGGTCCCCGGAATGCTCCGCTG
CACGTTCAGCGCTAAGTCTAACCGGCTGTCCAGCCTGCACCTTTCCTTTG
ACCCCAGTCTGCCGGCCCGTCAGCTGGCCCGCGCCGCGATGCTGCAGGGT
CGCGCGACGGCCAGCATGGCGGGCATGATGGCCGGACTCCTTGGCATGGG
GGGCACGAGCGCGGCGGGGACCGGGGCTGAAGGGGGGGGGTCTCCGCCGG
GGTGCACGGGGGCGGCAGCGAGGTGCGGAGTGGGGGGGTCTGCAATGTGC
CGTTTATTTATTTTCTCTGGTTCTGTCGCTGCTGCGGGTGTTTAATGTGC
TGCTGCGAGTTTTCAAAGATTCGTGTTGTTTTGTACTGGTATGGTACGTT
ATGCTTATCAGTGGTTGTTGATGACGTCATTCACCCCCCTTGGGGAAGAG
AGGGAGTAGGAGCGTCATGTTTTGCGTGCGTATGCTGGTAGGCCATTAGG
CTTTTCTGGAGATCTCAGCGGTTAAAGACCTGCCGTGTGTCGTGTCAACC
TATATAACAATATATATATATTGTTATATCTATAATATCCTCTATAAATA
ATATAGCCGCGTGCCCGGGGACACCGCCAGTCTTGCGATAAATGTTTGGT
ATAATTATGCATTTGAGTTCGATGGGCCACCTTCCTCGACCATATAACCT
ACCGTCGTTACACTCCTTTACACATACCCTACATTCCTGAGTCGATCGCA
TTTGTGTATTTGTTTGCTTGCTCTGGGGCGGGGCGGGGGGGGGATGCGTT
GCACTGTTCCTGTGGAGCAGCCGCGGTCTGACGAGCGCTGAAATGAGTGG
AGTTCCACAGGAGGCGTTCGCGGGGCAAGAAGAGGGGGTTCTCCATTCCG
TTCTGGAGGATCTACTCGAGGGTAGGGTCAGCTCCACGCTGGTGCACAAC
CCCACGCACGGTGAGTCA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig103065:260..1227-

>mRNA_H-elongata_contig103065.257.1 ID=mRNA_H-elongata_contig103065.257.1|Name=mRNA_H-elongata_contig103065.257.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig103065:260..1227- (Himanthalia elongata Himel1 dioecious)
ATGCTGAAACACAGGTCGCAGCACCTGCTGGTCCCCGGAATGCTCCGCTG
CACGTTCAGCGCTAAGTCTAACCGGCTGTCCAGCCTGCACCTTTCCTTTG
ACCCCAGTCTGCCGGCCCGTCAGCTGGCCCGCGCCGCGATGCTGCAGGGT
CGCGCGACGGCCAGCATGGCGGGCATGATGGCCGGACTCCTTGGCATGGG
GGGCACGAGCGCGGCGGGGACCGGGGCTGAAGGGGGGGGGTCTCCGCCGG
GGTGCACGGGGGCGGCAGCGAGATGCTGAAACACAGGTCGCAGCACCTGC
TGGTCCCCGGAATGCTCCGCTGCACGTTCAGCGCTAAGTCTAACCGGCTG
TCCAGCCTGCACCTTTCCTTTGACCCCAGTCTGCCGGCCCGTCAGCTGGC
CCGCGCCGCGATGCTGCAGGGTCGCGCGACGGCCAGCATGGCGGGCATGA
TGGCCGGACTCCTTGGCATGGGGGGCACGAGCGCGGCGGGGACCGGGGCT
GAAGGGGGGGGGTCTCCGCCGGGGTGCACGGGGGCGGCAGCGAGCAGCCG
CGGTCTGACGAGCGCTGAAATGAGTGGAGTTCCACAGGAGGCGTTCGCGG
GGCAAGAAGAGGGGGTTCTCCATTCCGTTCTGGAGGATCTACTCGAGGGT
AGGGTCAGCTCCACGCTGGTGCACAACCCCACGCACGGTGAGTCACAGCC
GCGGTCTGACGAGCGCTGAAATGAGTGGAGTTCCACAGGAGGCGTTCGCG
GGGCAAGAAGAGGGGGTTCTCCATTCCGTTCTGGAGGATCTACTCGAGGG
TAGGGTCAGCTCCACGCTGGTGCACAACCCCACGCACGGTGAGTCA
back to top