prot_H-elongata_contig100209.25.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig100209.25.1
Unique Nameprot_H-elongata_contig100209.25.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length141
Homology
[Close]
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.640e-22
Identity = 60/145 (41.38%), Postives = 82/145 (56.55%), Query Frame = 0 
Query:    1 MKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDY---ITPQELSIKYVRTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII-NVPREK-LWTQVMLFACDVTNKSITT 140
            M+  S+GGN Y +I  D+ TR+  V F+K KSD  AA    + DY     P E+ +   RTD GGEF+G+F     R  I  E TPP+TP+YNGVAERALG+L + A+A   +   +  + P    LW + +  AC   N + TT
Sbjct:    1 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEPYLADYRAETVPCEVFV--ARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATT 143
[Close]
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 7.290e-22
Identity = 60/145 (41.38%), Postives = 82/145 (56.55%), Query Frame = 0 
Query:    1 MKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDY---ITPQELSIKYVRTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII-NVPREK-LWTQVMLFACDVTNKSITT 140
            M+  S+GGN Y +I  D+ TR+  V F+K KSD  AA    + DY     P E+ +   RTD GGEF+G+F     R  I  E TPP+TP+YNGVAERALG+L + A+A   +   +  + P    LW + +  AC   N + TT
Sbjct:  205 MQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFV--ARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATT 347
[Close]
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 7.710e-21
Identity = 58/144 (40.28%), Postives = 80/144 (55.56%), Query Frame = 0 
Query:    1 MKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYIT---PQELSIKYVRTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII-NVPREK-LWTQVMLFACDVTNKSIT 139
            MK  S+GGN Y +I  D+++R+  V F+K KSD        + DY T   P E+ I   RTD GGEF+G+F     R  I  E TPP TP+YNGVAERALG++ + A+A   +   +  + P    LW + +  AC   N + T
Sbjct:   32 MKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCI--ARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTAT 173
[Close]
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.710e-19
Identity = 54/142 (38.03%), Postives = 77/142 (54.23%), Query Frame = 0 
Query:    1 MKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYITPQ-ELSIKYVRTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII-NVPREK-LWTQVMLFACDVTNKSIT 139
            MK  S+GGN Y +I  D+++R+    F+K KSD        + DY T      + + RTD GGEF+G+F     R  I  E TPP TP+YN VAERALG++ + A+A   +   +  + P    LWT+ +  AC   N + T
Sbjct:  202 MKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADYRTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTPKYNSVAERALGLITDAALASRIQAKQLYPDAPNHPGLWTEAISCACHQLNCTAT 343
[Close]
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.830e-19
Identity = 59/147 (40.14%), Postives = 81/147 (55.10%), Query Frame = 0 
Query:    1 MKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYIT---PQELSIKYVRTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALG---ILREKAIALMEELDNII-NVPREK-LWTQVMLFACDVTNKSIT 139
            MK  S+GGN Y +I  D+++R+  V F+K KSD    L   + DY T   P E+ I   RTD GGEF+G+F     R  I  E TPP TP+YNGVAERALG   ++ + A+A   +   +  + P    LW + +  AC   N + T
Sbjct:  656 MKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYI--ARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTAT 800
[Close]
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.840e-19
Identity = 54/142 (38.03%), Postives = 77/142 (54.23%), Query Frame = 0 
Query:    1 MKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYITPQELSIKYV-RTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII-NVPREK-LWTQVMLFACDVTNKSIT 139
            MK  S+GGN Y +I  D+++R+  V F+K KSD        + DY T       ++ R D GGEF+G+F     R  I  E TPP TP+YNGVAERALG++ + A+A   +   +  + P    LW + +  AC   N + T
Sbjct:  711 MKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTAT 852
[Close]
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: UPI0007F03497 (uncharacterized protein LOC108203536 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F03497)

HSP 1 Score: 92.4 bits (228), Expect = 4.560e-19
Identity = 51/133 (38.35%), Postives = 74/133 (55.64%), Query Frame = 0 
Query:    5 SLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYITPQELSIKYVRTDNGGEFEGE-FQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNIINVPREKLWTQVMLFACDVTNK 136
            SLGGNSY ++ VD+Y+R+   +F+K KSD   +  +L +     Q+ +I Y+RTD+G EFE   F+   D   ITH  + P TPQ NGV ER    L+E A  ++ E         +  W +VM  AC + N+
Sbjct:  864 SLGGNSYTLVIVDDYSRYTWTEFLKAKSDAFESFSALCKKIQNQQKNTIVYIRTDHGKEFENSSFKTFCDENGITHNFSAPYTPQSNGVVERKNRTLQEMANTMLNEYRR-----PKYFWAEVMSTACHILNR 991
[Close]
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 5.080e-19
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 0 
Query:    5 SLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLS-LIEDYITPQELSIKYVRTDNGGEF-EGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII----NVPREKLWTQVMLFACDVTNKSITT 140
            SLGG  Y +I  D+YTR+  V F+K KSD   A    L E+        +  VR+DNGGEF EGEF     +  I  E TP  +P+Y+GVAERALG++ + A+A   +   +     N P   LW + + ++C+  N + TT
Sbjct:   49 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTT 188
[Close]
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 8.730e-19
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 0 
Query:    5 SLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLS-LIEDYITPQELSIKYVRTDNGGEF-EGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII----NVPREKLWTQVMLFACDVTNKSITT 140
            SLGG  Y +I  D+YTR+  V F+K KSD   A    L E+        +  VR+DNGGEF EGEF     +  I  E TP  +P+YNGVAERALG++++ A+A   +   +     N P   LW + + ++C+  N + TT
Sbjct:  748 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTT 887
[Close]
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 8.760e-19
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 0 
Query:    5 SLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLS-LIEDYITPQELSIKYVRTDNGGEF-EGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII----NVPREKLWTQVMLFACDVTNKSITT 140
            SLGG  Y +I  D+YTR+  V F+K KSD   A    L E+        +  VR+DNGGEF EGEF     +  I  E TP  +P+YNGVAERALG++++ A+A   +   +     N P   LW + + ++C+  N + TT
Sbjct:  583 SLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTT 722
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKB4_9PHAE2.640e-2241.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE7.290e-2241.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE7.710e-2140.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L1A7_9PHAE1.710e-1938.03Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE1.830e-1940.14Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JAQ2_9PHAE1.840e-1938.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0007F034974.560e-1938.35uncharacterized protein LOC108203536 n=1 Tax=Daucu... [more]
A0A6H5J7U9_9PHAE5.080e-1938.73Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTI6_9PHAE8.730e-1939.44Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZQ8_9PHAE8.760e-1939.44Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 6..102
e-value: 2.4E-14
score: 53.6
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..140
score: 15.742
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..140
e-value: 6.3E-17
score: 63.4
NoneNo IPR availablePANTHERPTHR11439:SF250coord: 3..109
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..109
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 5..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100209contigH-elongata_contig100209:1250..1672 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100209.25.1mRNA_H-elongata_contig100209.25.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig100209 1142..1672 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig100209.25.1 ID=prot_H-elongata_contig100209.25.1|Name=mRNA_H-elongata_contig100209.25.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYITPQE
LSIKYVRTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALGIL
REKAIALMEELDNIINVPREKLWTQVMLFACDVTNKSITT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf