mRNA_H-elongata_contig100209.25.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 118 bits (295), Expect = 2.530e-28 Identity = 72/181 (39.78%), Postives = 103/181 (56.91%), Query Frame = 1 Query: 1 CETCFQAKAKRYTMSKTTDERASVRGQ*FFVDVGGPMKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDY---ITPQELSIKYVRTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII-NVPREK-LWTQVMLFACDVTNKSITT 528 C C +K + +SK+TD RA+ + F+++GG M+ S+GGN Y +I D+ TR+ V F+K KSD AA + DY P E+ + RTD GGEF+G+F R I E TPP+TP+YNGVAERALG+L + A+A + + + P LW + + AC N + TT Sbjct: 169 CLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFV--ARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSALASRIQAKEMFPDAPVSPGLWAEAISCACHQMNCTATT 347
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: B1PJ47_PHATR (Gag-pol polyprotein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B1PJ47_PHATR) HSP 1 Score: 111 bits (278), Expect = 3.130e-25 Identity = 66/176 (37.50%), Postives = 99/176 (56.25%), Query Frame = 1 Query: 1 CETCFQAKAKRYTMSKTTDERASVRGQ*FFVDVGGPMKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYITPQELSIKYVRTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNIINVPREKLWTQVMLFACDVTNKSITT 528 CE C AKAK+ ++SKTT+ RA G+ FVD+ GP + LG Y + VD+ TR + FVK++SD + L + + + KY+R DN GE + + D++ +T E T PDTPQ NGV ER + +L+++A A+M D + R LW + + A D+ N S+ T Sbjct: 602 CEGCCLAKAKQKSVSKTTNIRAKSPGERLFVDMSGPFTATILGSR-YQIQVVDDATRKGFIGFVKKRSDLSQWLEENVLSKLEGMQKQTKYLRADNAGENKNPLEKLCDKKGMTLELTAPDTPQQNGVVERRIAVLQQRANAMMMAAD-LTPEARALLWAEALNTANDLENISLNT 775
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5J7U9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7U9_9PHAE) HSP 1 Score: 103 bits (257), Expect = 3.910e-24 Identity = 67/182 (36.81%), Postives = 94/182 (51.65%), Query Frame = 1 Query: 1 CETCFQAKAKRYTMSKTTDERASVRGQ*FFVDVGGPMKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLS-LIEDYITPQELSIKYVRTDNGGEF-EGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII----NVPREKLWTQVMLFACDVTNKSITT 528 C C AK + T RA + Q FVD+ G + SLGG Y +I D+YTR+ V F+K KSD A L E+ + VR+DNGGEF EGEF + I E TP +P+Y+GVAERALG++ + A+A + + N P LW + + ++C+ N + TT Sbjct: 9 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYDGVAERALGLIEDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTT 188
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.400e-24 Identity = 65/167 (38.92%), Postives = 93/167 (55.69%), Query Frame = 1 Query: 40 MSKTTDERASVRGQ*FFVDVGGPMKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYIT---PQELSIKYVRTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII-NVPREK-LWTQVMLFACDVTNKSIT 525 + K+T RA + ++D+GG MK S+GGN Y +I D+++R+ V F+K KSD + DY T P E+ I RTD GGEF+G+F R I E TPP TP+YNGVAERALG++ + A+A + + + P LW + + AC N + T Sbjct: 9 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCI--ARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTAT 173
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5K1N9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1N9_9PHAE) HSP 1 Score: 106 bits (265), Expect = 1.680e-23 Identity = 67/180 (37.22%), Postives = 97/180 (53.89%), Query Frame = 1 Query: 1 CETCFQAKAKRYTMSKTTDERASVRGQ*FFVDVGGPMKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYITPQELS-IKYVRTDNGGEF-EGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII-NVPREK-LWTQVMLFACDVTNKSITT 528 C C AK + T RA + Q FFV++ G + SLGG Y +I D+YTR+ V F+K KSD A +++ S + VR+DNGGEF EGEF + I E TP +P+YNGVAERALG++++ AIA + + P + LW + + ++C+ N + TT Sbjct: 341 CLGCSTAKGLSEPIPNKTSTRAFKKLQRFFVELSGKARAQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLKEKRADGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAAIAARIQAPTLYPGAPNYRSLWAEAIAWSCNALNCTSTT 520
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 106 bits (264), Expect = 2.330e-23 Identity = 68/183 (37.16%), Postives = 98/183 (53.55%), Query Frame = 1 Query: 1 CETCFQAKAKRYTMSKTTDERASVRGQ*FFVDVGGPMKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYIT---PQELSIKYVRTDNGGEFEGEFQCELDRRSITHEHTPPDTPQYNGVAERALG---ILREKAIALMEELDNII-NVPREK-LWTQVMLFACDVTNKSIT 525 C C + + + K+T RA + ++D+GG MK S+GGN Y +I D+++R+ V F+K KSD L + DY T P E+ I RTD GGEF+G+F R I E TPP TP+YNGVAERALG ++ + A+A + + + P LW + + AC N + T Sbjct: 620 CLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYI--ARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGALGLITDAALASRIQATQLFPDAPNHPGLWAEAISCACHQLNCTAT 800
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5JTI6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI6_9PHAE) HSP 1 Score: 106 bits (264), Expect = 2.360e-23 Identity = 68/182 (37.36%), Postives = 95/182 (52.20%), Query Frame = 1 Query: 1 CETCFQAKAKRYTMSKTTDERASVRGQ*FFVDVGGPMKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLS-LIEDYITPQELSIKYVRTDNGGEF-EGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII----NVPREKLWTQVMLFACDVTNKSITT 528 C C AK + T RA + Q FVD+ G + SLGG Y +I D+YTR+ V F+K KSD A L E+ + VR+DNGGEF EGEF + I E TP +P+YNGVAERALG++++ A+A + + N P LW + + ++C+ N + TT Sbjct: 708 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTT 887
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 106 bits (264), Expect = 2.370e-23 Identity = 68/182 (37.36%), Postives = 95/182 (52.20%), Query Frame = 1 Query: 1 CETCFQAKAKRYTMSKTTDERASVRGQ*FFVDVGGPMKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLS-LIEDYITPQELSIKYVRTDNGGEF-EGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII----NVPREKLWTQVMLFACDVTNKSITT 528 C C AK + T RA + Q FVD+ G + SLGG Y +I D+YTR+ V F+K KSD A L E+ + VR+DNGGEF EGEF + I E TP +P+YNGVAERALG++++ A+A + + N P LW + + ++C+ N + TT Sbjct: 543 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTT 722
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 106 bits (264), Expect = 2.380e-23 Identity = 68/182 (37.36%), Postives = 95/182 (52.20%), Query Frame = 1 Query: 1 CETCFQAKAKRYTMSKTTDERASVRGQ*FFVDVGGPMKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLS-LIEDYITPQELSIKYVRTDNGGEF-EGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII----NVPREKLWTQVMLFACDVTNKSITT 528 C C AK + T RA + Q FVD+ G + SLGG Y +I D+YTR+ V F+K KSD A L E+ + VR+DNGGEF EGEF + I E TP +P+YNGVAERALG++++ A+A + + N P LW + + ++C+ N + TT Sbjct: 556 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTT 735
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 106 bits (264), Expect = 2.390e-23 Identity = 68/182 (37.36%), Postives = 95/182 (52.20%), Query Frame = 1 Query: 1 CETCFQAKAKRYTMSKTTDERASVRGQ*FFVDVGGPMKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLS-LIEDYITPQELSIKYVRTDNGGEF-EGEFQCELDRRSITHEHTPPDTPQYNGVAERALGILREKAIALMEELDNII----NVPREKLWTQVMLFACDVTNKSITT 528 C C AK + T RA + Q FVD+ G + SLGG Y +I D+YTR+ V F+K KSD A L E+ + VR+DNGGEF EGEF + I E TP +P+YNGVAERALG++++ A+A + + N P LW + + ++C+ N + TT Sbjct: 699 CLGCSTAKGLSKPIPNKTSTRAVKKLQRVFVDLSGKARVQSLGGKWYTLIVKDDYTRWNRVYFLKHKSDAAEAFERYLAENRANGAPSDVMVVRSDNGGEFFEGEFGRVCRKYCIKQEFTPAHSPEYNGVAERALGLIKDAALAARIQAPTLYPGAPNYP--SLWAEAIAWSCNALNCTSTT 878 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100209.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100209.25.1 >prot_H-elongata_contig100209.25.1 ID=prot_H-elongata_contig100209.25.1|Name=mRNA_H-elongata_contig100209.25.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp MKHSSLGGNSYVVIFVDNYTRFKVVKFVKRKSDTTAALLSLIEDYITPQEback to top mRNA from alignment at H-elongata_contig100209:1142..1672+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100209.25.1 ID=mRNA_H-elongata_contig100209.25.1|Name=mRNA_H-elongata_contig100209.25.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=531bp|location=Sequence derived from alignment at H-elongata_contig100209:1142..1672+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100209:1142..1672+ >mRNA_H-elongata_contig100209.25.1 ID=mRNA_H-elongata_contig100209.25.1|Name=mRNA_H-elongata_contig100209.25.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig100209:1142..1672+ (Himanthalia elongata Himel1 dioecious)back to top |