mRNA_H-elongata_contig103023.255.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig103023.255.1
Unique NamemRNA_H-elongata_contig103023.255.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig103023.255.1 vs. uniprot
Match: D7G9I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9I6_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 2.480e-35
Identity = 77/121 (63.64%), Postives = 96/121 (79.34%), Query Frame = 1 
Query:    1 ERVRREKQRREEAAELLTQLRDKLETDKERARRTYMESRSFEVAVVHYTEAISSMEDLVYHVRLHGDENGS--VSTADEL-RRRLAPLFWSRAAAHIMIGRYRSAVTDCALALESNKDFDQ 354
            ER++RE+Q+R +A   L +LR + E+DKE ARRTYMES+SFE A + YT AI S+EDL++H++LHGDE G+     AD   R+RLAPL+WSRAAAHIMIGRYRSAV DCALALES  D+DQ
Sbjct:  225 ERMQREEQQRLQAVANLERLRKRHESDKESARRTYMESKSFEAAALEYTTAIRSLEDLLFHIKLHGDERGNRGEGAADGGGRKRLAPLYWSRAAAHIMIGRYRSAVKDCALALESAADWDQ 345
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig103023.255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9I6_ECTSI2.480e-3563.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig103023contigH-elongata_contig103023:1372..2087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-00_011450.1
Exons2
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929566.4778545-CDS-H-elongata_contig103023:1371..14901622929566.4778545-CDS-H-elongata_contig103023:1371..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103023 1372..1490 +
1691679073.2750082-CDS-H-elongata_contig103023:1371..14901691679073.2750082-CDS-H-elongata_contig103023:1371..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103023 1372..1490 +
1622929566.4913933-CDS-H-elongata_contig103023:1852..20871622929566.4913933-CDS-H-elongata_contig103023:1852..2087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103023 1853..2087 +
1691679073.2828228-CDS-H-elongata_contig103023:1852..20871691679073.2828228-CDS-H-elongata_contig103023:1852..2087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig103023 1853..2087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig103023.255.1prot_H-elongata_contig103023.255.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig103023 1372..2087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig103023.255.1

>prot_H-elongata_contig103023.255.1 ID=prot_H-elongata_contig103023.255.1|Name=mRNA_H-elongata_contig103023.255.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=118bp
ERVRREKQRREEAAELLTQLRDKLETDKERARRTYMESRSFEVAVVHYTE
AISSMEDLVYHVRLHGDENGSVSTADELRRRLAPLFWSRAAAHIMIGRYR
SAVTDCALALESNKDFDQ
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mRNA from alignment at H-elongata_contig103023:1372..2087+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig103023.255.1 ID=mRNA_H-elongata_contig103023.255.1|Name=mRNA_H-elongata_contig103023.255.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=716bp|location=Sequence derived from alignment at H-elongata_contig103023:1372..2087+ (Himanthalia elongata Himel1 dioecious)
GAACGGGTGCGTAGAGAGAAGCAACGGCGCGAGGAGGCTGCGGAGTTATT
GACTCAGCTTAGAGATAAGCTCGAGACCGACAAGGAGCGAGCGCGACGCA
CGTACATGGAGTCGAGGAGGTGATATCATGCCCTGGTCGAAGTATTTTTT
ACTATCGTTGATTTTCTCTAGCACCCCCCTATTATAGAAGAGTTACCTTA
AAAGCTCGATGAGAGAGAGAAAACGGTTTCGGTTCGTGTTTCGTGTTTCG
AGTTCGCCATTGTCAGATTAAATCCACCGCTCATTGATAAATTTTACGAA
ACTCCCTTGACTCTCTCCCTTCAAGTGAACCTGTTACTACCGATGTAATT
TAGCGTTGATTGTTCTGAGCTTTCCCAGTCGCACCGTTGCATTCGCTCGC
GGGTGGCATTTTGATATAATACTCTAGACTAACGCTTGTTCTCTTCCGTT
TATGGTCTTTGGTTCATGATTTTTTTGCCAGCTTTGAGGTTGCGGTTGTG
CACTACACGGAGGCCATCAGTTCCATGGAGGATCTGGTGTATCACGTAAG
GCTCCACGGGGACGAAAATGGGAGCGTCAGTACGGCCGACGAGCTGAGAA
GGCGTCTGGCGCCGCTCTTTTGGAGCCGGGCGGCGGCGCATATCATGATC
GGTAGATACCGCAGCGCTGTTACAGACTGCGCTCTGGCGCTTGAGTCTAA
CAAGGATTTCGATCAG
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Coding sequence (CDS) from alignment at H-elongata_contig103023:1372..2087+

>mRNA_H-elongata_contig103023.255.1 ID=mRNA_H-elongata_contig103023.255.1|Name=mRNA_H-elongata_contig103023.255.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=708bp|location=Sequence derived from alignment at H-elongata_contig103023:1372..2087+ (Himanthalia elongata Himel1 dioecious)
GAACGGGTGCGTAGAGAGAAGCAACGGCGCGAGGAGGCTGCGGAGTTATT
GACTCAGCTTAGAGATAAGCTCGAGACCGACAAGGAGCGAGCGCGACGCA
CGTACATGGAGTCGAGGAGGAACGGGTGCGTAGAGAGAAGCAACGGCGCG
AGGAGGCTGCGGAGTTATTGACTCAGCTTAGAGATAAGCTCGAGACCGAC
AAGGAGCGAGCGCGACGCACGTACATGGAGTCGAGGAGCTTTGAGGTTGC
GGTTGTGCACTACACGGAGGCCATCAGTTCCATGGAGGATCTGGTGTATC
ACGTAAGGCTCCACGGGGACGAAAATGGGAGCGTCAGTACGGCCGACGAG
CTGAGAAGGCGTCTGGCGCCGCTCTTTTGGAGCCGGGCGGCGGCGCATAT
CATGATCGGTAGATACCGCAGCGCTGTTACAGACTGCGCTCTGGCGCTTG
AGTCTAACAAGGATTTCGATCAGCTTTGAGGTTGCGGTTGTGCACTACAC
GGAGGCCATCAGTTCCATGGAGGATCTGGTGTATCACGTAAGGCTCCACG
GGGACGAAAATGGGAGCGTCAGTACGGCCGACGAGCTGAGAAGGCGTCTG
GCGCCGCTCTTTTGGAGCCGGGCGGCGGCGCATATCATGATCGGTAGATA
CCGCAGCGCTGTTACAGACTGCGCTCTGGCGCTTGAGTCTAACAAGGATT
TCGATCAG
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