prot_H-elongata_contig134939.2465.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig134939.2465.1
Unique Nameprot_H-elongata_contig134939.2465.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length145
Homology
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BLAST of mRNA_H-elongata_contig134939.2465.1 vs. uniprot
Match: D7FUF5_ECTSI (Conserved oligomeric Golgi complex subunit 7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF5_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 6.150e-39
Identity = 81/144 (56.25%), Postives = 100/144 (69.44%), Query Frame = 0 
Query:    4 REFGAVLELDESELTVLETLCGAKPAEDGLGHHPLRGDDRADPGDEEHTGEPEDT---EAARFCTAWLLCIGSGTVGCLLAKVLALPRLSQRGVKHLEADLKYLSNVFHALDLSAPPILERVTSLAELGTEDAYSHLAQETVAG 144
            R+ G  L+L ES+L +LETL GAK + +   H     D+     ++E           EAA+FCTAWLLC+GS TVGCLLAKVL+LP+LS+RG KHLEADLKYLSNV HALDL AP +LE V+ LA L  ++A +HL QETVAG
Sbjct:  774 RDCGLALDLGESDLMLLETLSGAKASTEPPKHRSAYSDNAEGGNNDEXXXXXXXXXXGEAAKFCTAWLLCVGSATVGCLLAKVLSLPQLSERGTKHLEADLKYLSNVLHALDLPAPSVLEHVSLLAGLSRDEAATHLVQETVAG 917
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BLAST of mRNA_H-elongata_contig134939.2465.1 vs. uniprot
Match: A0A061S3R8_9CHLO (Conserved oligomeric Golgi complex subunit 7 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S3R8_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 6.280e-5
Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 0 
Query:   54 EPEDTEAARFCTAWLLCIGSGTVGCLLAKVLALPRLSQRGVKHLEADLKYLSNVFHALDLSAPPILERVTSLAELGTED 132
            E ED E  +    WL  + +G+      K+LA+P+LS++G + L ADL+Y  NV  AL ++ P  L  +     L + D
Sbjct:  665 EDEDDELLQADADWLDKVATGSAELYTKKLLAIPKLSEKGAQQLSADLEYFCNVLSALSVAVPLTLTTIQVAVSLPSSD 743
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134939.2465.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUF5_ECTSI6.150e-3956.25Conserved oligomeric Golgi complex subunit 7 n=2 T... [more]
A0A061S3R8_9CHLO6.280e-534.18Conserved oligomeric Golgi complex subunit 7 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019335Conserved oligomeric Golgi complex subunit 7PANTHERPTHR21443CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7coord: 49..130
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..85
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 86..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134939contigH-elongata_contig134939:207..1205 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134939.2465.1mRNA_H-elongata_contig134939.2465.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig134939 207..1205 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig134939.2465.1 ID=prot_H-elongata_contig134939.2465.1|Name=mRNA_H-elongata_contig134939.2465.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MFLREFGAVLELDESELTVLETLCGAKPAEDGLGHHPLRGDDRADPGDEE
HTGEPEDTEAARFCTAWLLCIGSGTVGCLLAKVLALPRLSQRGVKHLEAD
LKYLSNVFHALDLSAPPILERVTSLAELGTEDAYSHLAQETVAGE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019335COG7