mRNA_H-elongata_contig134939.2465.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig134939.2465.1
Unique NamemRNA_H-elongata_contig134939.2465.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig134939.2465.1 vs. uniprot
Match: D7FUF5_ECTSI (Conserved oligomeric Golgi complex subunit 7 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUF5_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 6.150e-39
Identity = 81/144 (56.25%), Postives = 100/144 (69.44%), Query Frame = 1 
Query:   10 REFGAVLELDESELTVLETLCGAKPAEDGLGHHPLRGDDRADPGDEEHTGEPEDT---EAARFCTAWLLCIGSGTVGCLLAKVLALPRLSQRGVKHLEADLKYLSNVFHALDLSAPPILERVTSLAELGTEDAYSHLAQETVAG 432
            R+ G  L+L ES+L +LETL GAK + +   H     D+     ++E           EAA+FCTAWLLC+GS TVGCLLAKVL+LP+LS+RG KHLEADLKYLSNV HALDL AP +LE V+ LA L  ++A +HL QETVAG
Sbjct:  774 RDCGLALDLGESDLMLLETLSGAKASTEPPKHRSAYSDNAEGGNNDEXXXXXXXXXXGEAAKFCTAWLLCVGSATVGCLLAKVLSLPQLSERGTKHLEADLKYLSNVLHALDLPAPSVLEHVSLLAGLSRDEAATHLVQETVAG 917
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BLAST of mRNA_H-elongata_contig134939.2465.1 vs. uniprot
Match: A0A061S3R8_9CHLO (Conserved oligomeric Golgi complex subunit 7 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S3R8_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 6.280e-5
Identity = 27/79 (34.18%), Postives = 42/79 (53.16%), Query Frame = 1 
Query:  160 EPEDTEAARFCTAWLLCIGSGTVGCLLAKVLALPRLSQRGVKHLEADLKYLSNVFHALDLSAPPILERVTSLAELGTED 396
            E ED E  +    WL  + +G+      K+LA+P+LS++G + L ADL+Y  NV  AL ++ P  L  +     L + D
Sbjct:  665 EDEDDELLQADADWLDKVATGSAELYTKKLLAIPKLSEKGAQQLSADLEYFCNVLSALSVAVPLTLTTIQVAVSLPSSD 743
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig134939.2465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUF5_ECTSI6.150e-3956.25Conserved oligomeric Golgi complex subunit 7 n=2 T... [more]
A0A061S3R8_9CHLO6.280e-534.18Conserved oligomeric Golgi complex subunit 7 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig134939contigH-elongata_contig134939:207..1205 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue7.4e-34
Seed eggNOG ortholog2880.D7FUF5
Preferred nameCOG7
KEGG koko:K10878,ko:K17586,ko:K20294
KEGG Pathwayko04113,map04113
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0000916,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005794,GO:0005802,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007010,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007276,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030029,GO:0030036,GO:0030865,GO:0030866,GO:0031032,GO:0031090,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032504,GO:0032506,GO:0032588,GO:0032991,GO:0033036,GO:0033206,GO:0033365,GO:0034067,GO:0034613,GO:0034645,GO:0036063,GO:0036211,GO:0036213,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044837,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048609,GO:0050821,GO:0051179,GO:0051234,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061640,GO:0065007,GO:0065008,GO:0070013,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046
EggNOG free text desc.retrograde vesicle-mediated transport, Golgi to ER
EggNOG OGsKOG4182@1,KOG4182@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size435
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929800.7866573-CDS-H-elongata_contig134939:206..3951622929800.7866573-CDS-H-elongata_contig134939:206..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134939 207..395 -
1691679162.50214-CDS-H-elongata_contig134939:206..3951691679162.50214-CDS-H-elongata_contig134939:206..395Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134939 207..395 -
1622929800.8204656-CDS-H-elongata_contig134939:959..12051622929800.8204656-CDS-H-elongata_contig134939:959..1205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134939 960..1205 -
1691679162.5133917-CDS-H-elongata_contig134939:959..12051691679162.5133917-CDS-H-elongata_contig134939:959..1205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig134939 960..1205 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig134939.2465.1prot_H-elongata_contig134939.2465.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig134939 207..1205 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig134939.2465.1

>prot_H-elongata_contig134939.2465.1 ID=prot_H-elongata_contig134939.2465.1|Name=mRNA_H-elongata_contig134939.2465.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
MFLREFGAVLELDESELTVLETLCGAKPAEDGLGHHPLRGDDRADPGDEE
HTGEPEDTEAARFCTAWLLCIGSGTVGCLLAKVLALPRLSQRGVKHLEAD
LKYLSNVFHALDLSAPPILERVTSLAELGTEDAYSHLAQETVAGE
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mRNA from alignment at H-elongata_contig134939:207..1205-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig134939.2465.1 ID=mRNA_H-elongata_contig134939.2465.1|Name=mRNA_H-elongata_contig134939.2465.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at H-elongata_contig134939:207..1205- (Himanthalia elongata Himel1 dioecious)
ATGTTCTTAAGAGAGTTCGGCGCGGTGCTGGAGCTAGATGAATCCGAGCT
GACGGTGCTGGAAACCCTTTGCGGAGCGAAACCGGCAGAAGACGGCTTGG
GCCATCACCCCCTCCGCGGAGACGATCGAGCTGATCCAGGGGATGAAGAG
CACACAGGGGAGCCCGAGGATACGGAGGCGGCCAGGTTTTGCACGGCGTG
GCTCTTGTGTATCGGCAGCGGGACTGTCGGCTGCCTCTTGGCGAAGGTAC
ACGCGGTGCATCAATAGTGTGTACATTATCGTTTAGTGTGGATGGTGTAT
ATGGTATGTATATTGTGTTTAGTGTGGATGCTGTGGATGGTGGGCAGAAT
CTTGGCGCACTACGCAATGCCGCCCCCGTTCCCCAGTAGGTGCATGTTTG
TACCAGCTGGGATGGGCGAGGTGACGAGAGAAAGTGTAAAATAGGCAACG
ACGCTATGAACGCACAAACGAAAAGACTCGCAGCACAAATCATCGTGCAG
GTAGAACATATTGCGAGCAGTATATTTTGGGGATGGGGCTGGCCCGATGG
CGAGAGAGCAGGAGGCACGTAACGAGGAATTACTGAAATACTCCTAAGTA
GCTCTGTATGGGGCGACATGGTGTCTTGCGTGTCAGCCAGGGGCTTCGAA
GCCCAGGACACCCGAAAACTACGATACGCCCACAAGCGACCAGCGATAAC
ATTGACGCTGCCACCGCATAGACAAGAGAAGGGTATTGCGTTGCAACCCG
AATACCGACGCGATTATTTAGCTCGGAATCGAAACCGCTAAACGACTTTT
CTGTCCTTAGGTATTGGCGCTGCCTCGGCTAAGCCAGCGCGGCGTGAAGC
ATCTGGAGGCGGATCTCAAGTACCTATCAAACGTGTTCCACGCGTTGGAT
TTGTCGGCGCCTCCCATTTTGGAGCGTGTGACGTCATTGGCTGAATTGGG
AACGGAGGACGCTTATAGTCACCTGGCTCAAGAGACGGTGGCCGGTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig134939:207..1205-

>mRNA_H-elongata_contig134939.2465.1 ID=mRNA_H-elongata_contig134939.2465.1|Name=mRNA_H-elongata_contig134939.2465.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig134939:207..1205- (Himanthalia elongata Himel1 dioecious)
ATGTTCTTAAGAGAGTTCGGCGCGGTGCTGGAGCTAGATGAATCCGAGCT
GACGGTGCTGGAAACCCTTTGCGGAGCGAAACCGGCAGAAGACGGCTTGG
GCCATCACCCCCTCCGCGGAGACGATCGAGCTGATCCAGGGGATGAAGAG
CACACAGGGGAGCCCGAGGATACGGAGGCGGCCAGGTTTTGCACGGCGTG
GCTCTTGTGTATCGGCAGCGGGACTGTCGGCTGCCTCTTGGCGAAGATGT
TCTTAAGAGAGTTCGGCGCGGTGCTGGAGCTAGATGAATCCGAGCTGACG
GTGCTGGAAACCCTTTGCGGAGCGAAACCGGCAGAAGACGGCTTGGGCCA
TCACCCCCTCCGCGGAGACGATCGAGCTGATCCAGGGGATGAAGAGCACA
CAGGGGAGCCCGAGGATACGGAGGCGGCCAGGTTTTGCACGGCGTGGCTC
TTGTGTATCGGCAGCGGGACTGTCGGCTGCCTCTTGGCGAAGGTATTGGC
GCTGCCTCGGCTAAGCCAGCGCGGCGTGAAGCATCTGGAGGCGGATCTCA
AGTACCTATCAAACGTGTTCCACGCGTTGGATTTGTCGGCGCCTCCCATT
TTGGAGCGTGTGACGTCATTGGCTGAATTGGGAACGGAGGACGCTTATAG
TCACCTGGCTCAAGAGACGGTGGCCGGTGAGGTATTGGCGCTGCCTCGGC
TAAGCCAGCGCGGCGTGAAGCATCTGGAGGCGGATCTCAAGTACCTATCA
AACGTGTTCCACGCGTTGGATTTGTCGGCGCCTCCCATTTTGGAGCGTGT
GACGTCATTGGCTGAATTGGGAACGGAGGACGCTTATAGTCACCTGGCTC
AAGAGACGGTGGCCGGTGAG
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