prot_H-elongata_contig102774.241.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig102774.241.1
Unique Nameprot_H-elongata_contig102774.241.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length38
Homology
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BLAST of mRNA_H-elongata_contig102774.241.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.250e-9
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 0 
Query:    1 YEITGLETGTLYFVRLFAKNQMIGWGKASSTTPVSMTP 38
            YEI  +ETG+ YFVR+FA+NQM+GWG+AS TTP SM P
Sbjct: 8273 YEIVDVETGSQYFVRMFARNQMVGWGEASPTTPRSMVP 8310
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102774.241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNA6_ECTSI1.250e-968.42Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1..38
e-value: 1.3E-5
score: 27.0
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 1..38
score: 10.675
IPR036116Fibronectin type III superfamilySUPERFAMILY49265Fibronectin type IIIcoord: 1..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102774contigH-elongata_contig102774:606..719 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102774.241.1mRNA_H-elongata_contig102774.241.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig102774 606..719 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig102774.241.1 ID=prot_H-elongata_contig102774.241.1|Name=mRNA_H-elongata_contig102774.241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
YEITGLETGTLYFVRLFAKNQMIGWGKASSTTPVSMTP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR003961FN3_dom
IPR036116FN3_sf