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Homology
BLAST of mRNA_H-elongata_contig102774.241.1 vs. uniprot
Match: D7FNA6_ECTSI (Similar to titin isoform N2-B n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNA6_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 1.250e-9 Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 Query: 1 YEITGLETGTLYFVRLFAKNQMIGWGKASSTTPVSMTP 114
YEI +ETG+ YFVR+FA+NQM+GWG+AS TTP SM P
Sbjct: 8273 YEIVDVETGSQYFVRMFARNQMVGWGEASPTTPRSMVP 8310
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102774.241.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7FNA6_ECTSI | 1.250e-9 | 68.42 | Similar to titin isoform N2-B n=1 Tax=Ectocarpus s... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 62.0 |
| Seed ortholog evalue | 6.9e-08 |
| Seed eggNOG ortholog | 2880.D7FNA6 |
| KEGG ko | ko:K12567 |
| KEGG Pathway | ko05410,ko05414,map05410,map05414 |
| EggNOG free text desc. | cytoskeletal protein binding |
| EggNOG OGs | KOG0613@1,KOG0613@2759 |
| EC | 2.7.11.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko01001,ko04131,ko04147,ko04812 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 1 |
| Model size | 114 |
| Cds size | 114 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929565.1218257-CDS-H-elongata_contig102774:605..719 | 1622929565.1218257-CDS-H-elongata_contig102774:605..719 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102774 606..719 - |
| 1691679072.6134014-CDS-H-elongata_contig102774:605..719 | 1691679072.6134014-CDS-H-elongata_contig102774:605..719 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig102774 606..719 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102774.241.1 >prot_H-elongata_contig102774.241.1 ID=prot_H-elongata_contig102774.241.1|Name=mRNA_H-elongata_contig102774.241.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=38bp
YEITGLETGTLYFVRLFAKNQMIGWGKASSTTPVSMTP back to topmRNA from alignment at H-elongata_contig102774:606..719- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig102774.241.1 ID=mRNA_H-elongata_contig102774.241.1|Name=mRNA_H-elongata_contig102774.241.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=114bp|location=Sequence derived from alignment at H-elongata_contig102774:606..719- (Himanthalia elongata Himel1 dioecious)
TACGAGATCACAGGCCTGGAAACAGGTACCCTGTATTTCGTGCGGCTATT
TGCCAAGAACCAGATGATTGGATGGGGAAAGGCCTCTTCTACAACGCCTG
TATCCATGACGCCA back to topCoding sequence (CDS) from alignment at H-elongata_contig102774:606..719- >mRNA_H-elongata_contig102774.241.1 ID=mRNA_H-elongata_contig102774.241.1|Name=mRNA_H-elongata_contig102774.241.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=228bp|location=Sequence derived from alignment at H-elongata_contig102774:606..719- (Himanthalia elongata Himel1 dioecious)
TACGAGATCACAGGCCTGGAAACAGGTACCCTGTATTTCGTGCGGCTATT
TGCCAAGAACCAGATGATTGGATGGGGAAAGGCCTCTTCTACAACGCCTG
TATCCATGACGCCATACGAGATCACAGGCCTGGAAACAGGTACCCTGTAT
TTCGTGCGGCTATTTGCCAAGAACCAGATGATTGGATGGGGAAAGGCCTC
TTCTACAACGCCTGTATCCATGACGCCA back to top
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