mRNA_H-elongata_contig10274.237.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10274.237.1
Unique NamemRNA_H-elongata_contig10274.237.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10274.237.1 vs. uniprot
Match: A0A6H5JRF5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRF5_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.870e-31
Identity = 82/154 (53.25%), Postives = 100/154 (64.94%), Query Frame = 1 
Query:   25 QYAKGAITAVDLVRYLEKDVASKVSGCDLDDVVAAALARIPDTRKQDLLSKASRGRAIGPGGAAVSSGMSRGGS-DVIVNGQCGN-YAMSQGGQRVSSGKSTIYNGVEIGKEVR*EGVRLV*AFDRHLVVA-FSGIEPGLTRGALMRLYEHTIG 477
            QYA+GAITA DLVR LE++V   + GCDL+D VAAAL   PD RK+DLLSKAS GRAIGPGG+    G SRGG  DV V G  G  Y MSQGG R+SSGKS+I+NGVE+GKE     +++    +  LV A  S +E    R       +H +G
Sbjct:  124 QYAQGAITAGDLVRSLEREVVVLIPGCDLEDAVAAALEATPDMRKRDLLSKASGGRAIGPGGSTRRLGASRGGRPDVTVEGGRGQQYLMSQGGARISSGKSSIFNGVEVGKEGTPLKIKVTTRSNVALVAAEVSNLEQIRARNGAGAFSKHFVG 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10274.237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRF5_9PHAE2.870e-3153.25Protein kinase domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10274contigH-elongata_contig10274:5924..7242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue1e-28
Seed eggNOG ortholog2880.D7FIA7
Preferred nameTTK
KEGG koko:K08866,ko:K17388
KEGG Pathwayko04022,ko04024,ko04062,ko04071,ko04110,ko04111,ko04270,ko04310,ko04360,ko04510,ko04530,ko04611,ko04670,ko04810,ko04921,ko05130,ko05131,ko05132,ko05200,ko05205,map04022,map04024,map04062,map04071,map04110,map04111,map04270,map04310,map04360,map04510,map04530,map04611,map04670,map04810,map04921,map05130,map05131,map05132,map05200,map05205
GOsGO:0000003,GO:0000075,GO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0001932,GO:0001934,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007060,GO:0007088,GO:0007093,GO:0007094,GO:0007140,GO:0007143,GO:0007276,GO:0007292,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008284,GO:0009611,GO:0009888,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010562,GO:0010564,GO:0010604,GO:0010639,GO:0010646,GO:0010647,GO:0010862,GO:0010948,GO:0010965,GO:0015630,GO:0016020,GO:0016043,GO:0016301,GO:0016310,GO:0016321,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018107,GO:0018108,GO:0018193,GO:0018209,GO:0018210,GO:0018212,GO:0019220,GO:0019222,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030071,GO:0031099,GO:0031101,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031577,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033316,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0036211,GO:0040007,GO:0040020,GO:0042060,GO:0042127,GO:0042246,GO:0042325,GO:0042327,GO:0042592,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043515,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044446,GO:0044464,GO:0044703,GO:0044779,GO:0044877,GO:0045132,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0045937,GO:0046777,GO:0046983,GO:0048232,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048589,GO:0048609,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051246,GO:0051247,GO:0051321,GO:0051445,GO:0051447,GO:0051641,GO:0051704,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060249,GO:0060255,GO:0060393,GO:0065007,GO:0065008,GO:0070727,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0072698,GO:0080090,GO:0090092,GO:0090100,GO:0098687,GO:0098813,GO:0140013,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1901993,GO:1901994,GO:1902099,GO:1902100,GO:1902102,GO:1902103,GO:1902850,GO:1903046,GO:1903047,GO:1903096,GO:1905132,GO:1905133,GO:1905359,GO:1905818,GO:1905819,GO:2000241,GO:2000242,GO:2000816,GO:2001251
EggNOG free text desc.protein localization to meiotic spindle midzone
EggNOG OGsKOG0596@1,KOG0596@2759
EC2.7.11.1,2.7.12.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase-like domain
Ec32 orthologEc-11_001190.1
Exons3
Model size818
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10274.237.1prot_H-elongata_contig10274.237.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10274 6437..7242 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.6666338-UTR-H-elongata_contig10274:5923..63771622929564.6666338-UTR-H-elongata_contig10274:5923..6377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10274 5924..6377 -
1691679072.3943205-UTR-H-elongata_contig10274:5923..63771691679072.3943205-UTR-H-elongata_contig10274:5923..6377Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10274 5924..6377 -
1622929564.6855714-UTR-H-elongata_contig10274:6435..64361622929564.6855714-UTR-H-elongata_contig10274:6435..6436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10274 6436..6436 -
1691679072.4091115-UTR-H-elongata_contig10274:6435..64361691679072.4091115-UTR-H-elongata_contig10274:6435..6436Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10274 6436..6436 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929564.7033937-CDS-H-elongata_contig10274:6436..66171622929564.7033937-CDS-H-elongata_contig10274:6436..6617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10274 6437..6617 -
1691679072.4350564-CDS-H-elongata_contig10274:6436..66171691679072.4350564-CDS-H-elongata_contig10274:6436..6617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10274 6437..6617 -
1622929564.7216883-CDS-H-elongata_contig10274:7060..72421622929564.7216883-CDS-H-elongata_contig10274:7060..7242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10274 7061..7242 -
1691679072.4506876-CDS-H-elongata_contig10274:7060..72421691679072.4506876-CDS-H-elongata_contig10274:7060..7242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10274 7061..7242 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10274.237.1

>prot_H-elongata_contig10274.237.1 ID=prot_H-elongata_contig10274.237.1|Name=mRNA_H-elongata_contig10274.237.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MRTINTSLQYAKGAITAVDLVRYLEKDVASKVSGCDLDDVVAAALARIPD
TRKQDLLSKASRGRAIGPGGAAVSSGMSRGGSDVIVNGQCGNYAMSQGGQ
RVSSGKSTIYNGVEIGKEVR*
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mRNA from alignment at H-elongata_contig10274:5924..7242-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10274.237.1 ID=mRNA_H-elongata_contig10274.237.1|Name=mRNA_H-elongata_contig10274.237.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1319bp|location=Sequence derived from alignment at H-elongata_contig10274:5924..7242- (Himanthalia elongata Himel1 dioecious)
ATGCGGACGATTAACACTTCATTGCAGTATGCGAAGGGGGCCATCACCGC
TGTCGACCTGGTGCGGTATCTCGAAAAAGACGTAGCGAGTAAGGTGTCCG
GCTGTGATCTCGACGACGTCGTGGCAGCTGCGCTGGCGAGGATCCCCGAC
ACCCGTAAGCAAGATCTTCTCTCCAAGGCCAGGTGAGGTTTTGAAGCTAA
TCTAACCTGACCCTGCGAAGGTAGGCTTGTTAGCGCTTCAGCAGCAGCGC
CTACATCCGGGTTTTTCTGGACCCTGTTGGGACGCCACGCCAGCCAATGC
GACTGTCCATCGATCCACTCTAAGCCAATCATCTATGTGAGACACACAAA
ATATTAATACTTGATATAGCTTCAGAGTAGCAATAGAGAAGAGGATCCGT
GGTTCGATGGGGATATACTGAAGACCTCTCCACGCAGCGAGTAGCCTAAC
GGCCTCTCGAGTGGCTTAGACACACAGACGACCGGAAATTTTCCAGATCA
TATGCTCCTGAATTGGACTGGTTCATCGTGCACAGCGAGATGCGGCCAAT
GGAGCAGCGTGCTACGCCAGCCTAACGAAAATCCCTACCACCGCTATTCT
TGTATTTCAACACGCAAACGTCCAGTCGCGGGAGAGCTATCGGCCCCGGA
GGGGCAGCCGTGTCTTCTGGAATGTCGCGCGGGGGCTCGGACGTCATCGT
GAACGGGCAATGCGGAAATTATGCCATGAGCCAGGGGGGACAGCGAGTCA
GCAGCGGGAAAAGCACGATATACAACGGAGTGGAGATCGGGAAGGAGGTG
AGGTGAGGTGAGGCCTGCTTTATTTTTGTCTAGCTTGTTTACCGAAAGAG
GCACTCCTTGCCAAGAAGGTGTCCGGTTGGTTTGAGCCTTCGATAGGCAC
CTCGTCGTGGCTTTTTCCGGAATCGAACCAGGCCTCACCCGCGGTGCCTT
GATGCGACTCTACGAACATACGATTGGGTTAATTTCCCCCCAAGCGAACC
AAGAAATAATTTCCCGGAGAATGTCCAGATTACAAATTGACACCGCGTTT
TTGCGCGCGCGTTCGCCATCGATGAACGCGGGACAATCTCTCCTTCAAGC
AAGCTCACCCTTCTGTCTCTTCGCCCTCTAAGGTAATCAGAGTGACCGAA
CTGTCGCCAAGGTGGGCATGTCCGCGGACCCCGTAATCCCCACACCCTCG
CATTGCGATATCGTACTATGTAGCCCATCCCGTACGTGCAAATAAATTGT
GGGGTTTTGGTGGGGGGGCGAATGGACCAGGATGTACCGCTAAAGCTCAA
GGTAACCACGAGATCGAAC
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Coding sequence (CDS) from alignment at H-elongata_contig10274:5924..7242-

>mRNA_H-elongata_contig10274.237.1 ID=mRNA_H-elongata_contig10274.237.1|Name=mRNA_H-elongata_contig10274.237.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig10274:5924..7242- (Himanthalia elongata Himel1 dioecious)
ATGCGGACGATTAACACTTCATTGCAGTATGCGAAGGGGGCCATCACCGC
TGTCGACCTGGTGCGGTATCTCGAAAAAGACGTAGCGAGTAAGGTGTCCG
GCTGTGATCTCGACGACGTCGTGGCAGCTGCGCTGGCGAGGATCCCCGAC
ACCCGTAAGCAAGATCTTCTCTCCAAGGCCAGATGCGGACGATTAACACT
TCATTGCAGTATGCGAAGGGGGCCATCACCGCTGTCGACCTGGTGCGGTA
TCTCGAAAAAGACGTAGCGAGTAAGGTGTCCGGCTGTGATCTCGACGACG
TCGTGGCAGCTGCGCTGGCGAGGATCCCCGACACCCGTAAGCAAGATCTT
CTCTCCAAGGCCAGTCGCGGGAGAGCTATCGGCCCCGGAGGGGCAGCCGT
GTCTTCTGGAATGTCGCGCGGGGGCTCGGACGTCATCGTGAACGGGCAAT
GCGGAAATTATGCCATGAGCCAGGGGGGACAGCGAGTCAGCAGCGGGAAA
AGCACGATATACAACGGAGTGGAGATCGGGAAGGAGGTGAGGTGATCGCG
GGAGAGCTATCGGCCCCGGAGGGGCAGCCGTGTCTTCTGGAATGTCGCGC
GGGGGCTCGGACGTCATCGTGAACGGGCAATGCGGAAATTATGCCATGAG
CCAGGGGGGACAGCGAGTCAGCAGCGGGAAAAGCACGATATACAACGGAG
TGGAGATCGGGAAGGAGGTGAGGTGA
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