mRNA_H-elongata_contig133218.2361.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig133218.2361.1
Unique NamemRNA_H-elongata_contig133218.2361.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Match: D8LHW4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHW4_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.320e-58
Identity = 99/105 (94.29%), Postives = 104/105 (99.05%), Query Frame = 1 
Query:    1 QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKPAYNHV 315
            QDV+LLIADELHLLGGPEGPTLE+VVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLE++L GFDVNHFGSRMLAMAKPAYN+V
Sbjct: 1494 QDVALLIADELHLLGGPEGPTLEVVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLEIKLHGFDVNHFGSRMLAMAKPAYNYV 1598
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BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Match: A0A835YNN3_9STRA (Sec63 Brl domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN3_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.260e-41
Identity = 72/105 (68.57%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    1 QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKPAYNHV 315
            Q VSLL+ D++HLLGG EGP LE+VVSR RY++SQ E+ CRIV L + LANAKDVG+W+GA +HSL +F P  RP PLELRLQGFDV HFGSR+LAMAKP Y  V
Sbjct: 1501 QQVSLLVVDDIHLLGGKEGPVLEVVVSRARYVASQTERACRIVALGSPLANAKDVGEWMGAPSHSLFNFHPSARPSPLELRLQGFDVGHFGSRLLAMAKPTYQAV 1605
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BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Match: A0A7S4DAU8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAU8_HETAK)

HSP 1 Score: 154 bits (390), Expect = 1.700e-41
Identity = 74/105 (70.48%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKPAYNHV 315
            Q+V+L + DELHLLG  EGP LE+VVSR RY++SQLE+K RIVGLS+SLANAKDVGDW+GATAHS  +F P+VRPVPLEL +QG DV HFGSRMLA  K  YN +
Sbjct:  807 QEVALFLVDELHLLGAAEGPALEVVVSRARYVASQLERKVRIVGLSSSLANAKDVGDWMGATAHSNFNFHPNVRPVPLELFIQGSDVGHFGSRMLAFGKTVYNAI 911
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BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Match: A0A7S4K3C1_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4K3C1_GUITH)

HSP 1 Score: 152 bits (385), Expect = 7.960e-41
Identity = 68/105 (64.76%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:    1 QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKPAYNHV 315
            Q+VSL I DE+HL+GG +GP LE++ SRMRYI SQ E+K RIV LSAS+ANAKD+G+WIGA++HSL SF P+VRP+PLE+ +QGFD+ H+ SR+LAM+KP YN +
Sbjct:  708 QNVSLFIVDEIHLIGGDKGPVLEVITSRMRYIGSQTEQKTRIVALSASVANAKDLGEWIGASSHSLYSFHPNVRPIPLEIHIQGFDIPHYASRILAMSKPMYNAI 812
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BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Match: L1K0L5_GUITC (Uncharacterized protein n=4 Tax=Geminigeraceae TaxID=589343 RepID=L1K0L5_GUITC)

HSP 1 Score: 152 bits (385), Expect = 8.120e-41
Identity = 68/105 (64.76%), Postives = 89/105 (84.76%), Query Frame = 1 
Query:    1 QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKPAYNHV 315
            Q+VSL I DE+HL+GG +GP LE++ SRMRYI SQ E+K RIV LSAS+ANAKD+G+WIGA++HSL SF P+VRP+PLE+ +QGFD+ H+ SR+LAM+KP YN +
Sbjct: 1391 QNVSLFIVDEIHLIGGDKGPVLEVITSRMRYIGSQTEQKTRIVALSASVANAKDLGEWIGASSHSLYSFHPNVRPIPLEIHIQGFDIPHYASRILAMSKPMYNAI 1495
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BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Match: D6PNI9_9BRAS (AT1G20960-like protein (Fragment) n=1 Tax=Neslia paniculata TaxID=98023 RepID=D6PNI9_9BRAS)

HSP 1 Score: 139 bits (351), Expect = 6.210e-40
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 1 
Query:    1 QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKPAYNHV 315
            Q VSL I DELHL+GG  GP LE++VSRMRYISSQ+  K RIV LS SLANAKD+G+WIGA++H L +F P VRPVPLE+ +QG D++ F +RM AM KP Y  +
Sbjct:    1 QQVSLFIVDELHLIGGLGGPVLEVIVSRMRYISSQVNNKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDISSFEARMQAMTKPTYTAI 105
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BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Match: A0A2K3KB46_TRIPR (U5 small nuclear ribonucleoprotein 200 kDa helicase-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KB46_TRIPR)

HSP 1 Score: 142 bits (357), Expect = 7.890e-40
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1 
Query:    1 QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKPAYNHV 315
            Q VSL I DELHL+GG  GP LE++VSRMRYI+SQ+E K RIV LS SLANAKD+G+WIGAT+H L +F P VRPVPLE+ +QG D+ +F +RM AM KP Y  +
Sbjct:   73 QQVSLFIIDELHLIGGQGGPILEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFEARMQAMTKPTYTSI 177
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BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Match: A0A7S2BE45_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BE45_9STRA)

HSP 1 Score: 148 bits (374), Expect = 2.470e-39
Identity = 66/105 (62.86%), Postives = 85/105 (80.95%), Query Frame = 1 
Query:    1 QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKPAYNHV 315
            Q+V+L I DE+HL+GG EGPTLE+V SRMRY++ Q ++  RIV L  S+ANAKDVGDW+GAT H L SF P VRPVPL++ + G D++HFGSRMLAMAKPA++ +
Sbjct: 1359 QEVALCIVDEVHLIGGSEGPTLEVVASRMRYVADQTDRAARIVALGTSMANAKDVGDWLGATGHGLFSFHPQVRPVPLDMFVHGLDISHFGSRMLAMAKPAFSAI 1463
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BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Match: A0A7S4F5U3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F5U3_CHRCT)

HSP 1 Score: 147 bits (372), Expect = 4.600e-39
Identity = 67/102 (65.69%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    1 QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKPAY 306
            Q+VSLLI DE+HL+GG  GP LE+V+SRMRYISSQ+E +CRIV LS SLANAKD+ +WIG ++H + +F  +VRPVPLE+ +QGFD+ H  SR+LAMAKPAY
Sbjct: 1463 QNVSLLIVDEMHLIGGEVGPVLEVVISRMRYISSQMESRCRIVALSTSLANAKDLAEWIGCSSHGIFNFHSNVRPVPLEIHIQGFDIAHVPSRLLAMAKPAY 1564
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BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Match: A0A7S1ST31_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1ST31_9CHLO)

HSP 1 Score: 138 bits (348), Expect = 6.100e-39
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 1 
Query:    1 QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLANAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKPAYN 309
            Q+V+L I DELHLLGG  GP LE+V SRMRYIS+Q EK  RI+GL  SLANAKD+G+WIGA  H L +F P VRPVPL + +QGFD+ +F +RM AM++P Y+
Sbjct:  125 QNVALFIVDELHLLGGQNGPALEVVTSRMRYISAQTEKNIRIIGLCTSLANAKDLGEWIGAGTHGLFNFAPGVRPVPLSIHIQGFDIANFEARMKAMSRPTYS 227
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig133218.2361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHW4_ECTSI1.320e-5894.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YNN3_9STRA1.260e-4168.57Sec63 Brl domain-containing protein n=1 Tax=Tribon... [more]
A0A7S4DAU8_HETAK1.700e-4170.48Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4K3C1_GUITH7.960e-4164.76Hypothetical protein (Fragment) n=1 Tax=Guillardia... [more]
L1K0L5_GUITC8.120e-4164.76Uncharacterized protein n=4 Tax=Geminigeraceae Tax... [more]
D6PNI9_9BRAS6.210e-4062.86AT1G20960-like protein (Fragment) n=1 Tax=Neslia p... [more]
A0A2K3KB46_TRIPR7.890e-4063.81U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
A0A7S2BE45_9STRA2.470e-3962.86Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A7S4F5U3_CHRCT4.600e-3965.69Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S1ST31_9CHLO6.100e-3962.14Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig133218contigH-elongata_contig133218:515..1120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score205.7
Seed ortholog evalue1.1e-50
Seed eggNOG ortholog2880.D8LHW4
Preferred namebrr2
KEGG koko:K12854
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000375,GO:0000377,GO:0000388,GO:0000393,GO:0000398,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0032991,GO:0034622,GO:0034641,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046540,GO:0065003,GO:0070035,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:0140098,GO:1901360,GO:1990904
EggNOG free text desc.response to ionizing radiation
EggNOG OGsCOG1204@1,KOG0951@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size315
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929790.064299-CDS-H-elongata_contig133218:514..6311622929790.064299-CDS-H-elongata_contig133218:514..631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133218 515..631 +
1691679158.493226-CDS-H-elongata_contig133218:514..6311691679158.493226-CDS-H-elongata_contig133218:514..631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133218 515..631 +
1622929790.0789032-CDS-H-elongata_contig133218:922..11201622929790.0789032-CDS-H-elongata_contig133218:922..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133218 923..1120 +
1691679158.5060256-CDS-H-elongata_contig133218:922..11201691679158.5060256-CDS-H-elongata_contig133218:922..1120Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig133218 923..1120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig133218.2361.1prot_H-elongata_contig133218.2361.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig133218 515..1120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig133218.2361.1

>prot_H-elongata_contig133218.2361.1 ID=prot_H-elongata_contig133218.2361.1|Name=mRNA_H-elongata_contig133218.2361.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
QDVSLLIADELHLLGGPEGPTLEIVVSRMRYISSQLEKKCRIVGLSASLA
NAKDVGDWIGATAHSLVSFRPDVRPVPLELRLQGFDVNHFGSRMLAMAKP
AYNHV
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mRNA from alignment at H-elongata_contig133218:515..1120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig133218.2361.1 ID=mRNA_H-elongata_contig133218.2361.1|Name=mRNA_H-elongata_contig133218.2361.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig133218:515..1120+ (Himanthalia elongata Himel1 dioecious)
CAGGACGTGTCTCTTCTCATCGCCGACGAGCTGCATCTCCTTGGCGGTCC
TGAGGGGCCCACCCTTGAGATCGTGGTGAGCCGGATGAGGTACATCAGCA
GCCAGCTCGAGAAAAAGGTGAAGGTGTAGCGCTGCACGTAAGGGGGGGGG
GAGGAGGGGATGAAGAAGTCTATGGAAAGTGTGCCCGTGTGTCGAGTACA
CATTCATAGTCATTCCCTTTCTCTCTTAACTCTCTCTCTCTCTCTCTCAT
TCAAATATTTCAAATATTTCAAATCTGAATCTTCATCCTCAGATCGTGAA
CCCTCTGCTATGCTTCTCTCCTAACCCCCCCCCCCCCCTCTCTTAACCTC
TGCCTGAACTTCCCCTCTAATACCAATCAATACATATCGAAACCTATTGG
TATTACAGTGCCGCATCGTGGGACTGTCAGCCTCGCTGGCGAACGCGAAA
GACGTGGGCGACTGGATCGGCGCCACCGCGCACTCGCTGGTGAGCTTTAG
GCCGGACGTGAGACCCGTGCCCCTGGAGCTGAGGCTGCAAGGCTTTGACG
TGAATCACTTCGGGTCGCGCATGCTGGCCATGGCGAAGCCTGCTTACAAC
CACGTT
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Coding sequence (CDS) from alignment at H-elongata_contig133218:515..1120+

>mRNA_H-elongata_contig133218.2361.1 ID=mRNA_H-elongata_contig133218.2361.1|Name=mRNA_H-elongata_contig133218.2361.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig133218:515..1120+ (Himanthalia elongata Himel1 dioecious)
CAGGACGTGTCTCTTCTCATCGCCGACGAGCTGCATCTCCTTGGCGGTCC
TGAGGGGCCCACCCTTGAGATCGTGGTGAGCCGGATGAGGTACATCAGCA
GCCAGCTCGAGAAAAAGCAGGACGTGTCTCTTCTCATCGCCGACGAGCTG
CATCTCCTTGGCGGTCCTGAGGGGCCCACCCTTGAGATCGTGGTGAGCCG
GATGAGGTACATCAGCAGCCAGCTCGAGAAAAAGTGCCGCATCGTGGGAC
TGTCAGCCTCGCTGGCGAACGCGAAAGACGTGGGCGACTGGATCGGCGCC
ACCGCGCACTCGCTGGTGAGCTTTAGGCCGGACGTGAGACCCGTGCCCCT
GGAGCTGAGGCTGCAAGGCTTTGACGTGAATCACTTCGGGTCGCGCATGC
TGGCCATGGCGAAGCCTGCTTACAACCACGTTTGCCGCATCGTGGGACTG
TCAGCCTCGCTGGCGAACGCGAAAGACGTGGGCGACTGGATCGGCGCCAC
CGCGCACTCGCTGGTGAGCTTTAGGCCGGACGTGAGACCCGTGCCCCTGG
AGCTGAGGCTGCAAGGCTTTGACGTGAATCACTTCGGGTCGCGCATGCTG
GCCATGGCGAAGCCTGCTTACAACCACGTT
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