prot_H-elongata_contig132900.2346.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig132900.2346.1
Unique Nameprot_H-elongata_contig132900.2346.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length103
Homology
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.770e-49
Identity = 87/102 (85.29%), Postives = 92/102 (90.20%), Query Frame = 0
Query:    1 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 102
            RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTL+ET  EWR+RK A   ++  KLPI ELKKV +
Sbjct:  970 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWRQRKNALLSKSLAKLPISELKKVDH 1071          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.550e-48
Identity = 86/99 (86.87%), Postives = 90/99 (90.91%), Query Frame = 0
Query:    1 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKK 99
            RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTL+ET  EWR+RK A   ++  KLPI ELKK
Sbjct:  880 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWRQRKNALLSKSLAKLPISELKK 978          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.230e-22
Identity = 50/110 (45.45%), Postives = 63/110 (57.27%), Query Frame = 0
Query:    9 LFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSEL---------TLRETPG-------EWRRRKAARWEEAFLKLPIPELKKVSN 102
            L   +AP+C  H +  +LL V+K+G N+GR+FYACS PRGE CDFFMW EDNP LV +EL         T  +  G       EW  R+   W+  F K+ IPELK  S 
Sbjct:  696 LLKEVAPKCTHHLQTARLLRVKKSGANRGRRFYACSFPRGEECDFFMWVEDNPILVAAELGFSSVAASPTAGDIAGLDISELDEWTDRQVEGWKRRFQKMTIPELKDTSK 805          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A7S4AC91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AC91_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 9.330e-17
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 0
Query:   14 APRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 102
            AP+C +HQR  KL+ V+KT   N+GR+FYACS+PRGE CD F WA+D      + L    +   +  R+ A + + F KL +PELK+ ++
Sbjct:   66 APKCARHQRPCKLIKVKKTTSGNRGREFYACSMPRGEQCDHFQWADDTVEAARNILAKNTSYSSFITRQVAAYVDRFRKLTVPELKEETS 155          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A448ZEN4_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEN4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.110e-15
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 0
Query:   13 LAPRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 102
            +AP+C +HQR  KL+ VRK T  NKGR+FYACS+PRGE CD F WA+D      + L    +   +  R+     + F  L +PELK+ ++
Sbjct:  610 VAPKCARHQRPCKLIKVRKNTSGNKGREFYACSMPRGEQCDHFQWADDTVEAARATLAKNSSYSSFVTRQVVAHVDRFRTLTVPELKRETS 700          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A482SRV8_9ARCH (RecQ family ATP-dependent DNA helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRV8_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 1.120e-14
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0
Query:    9 LFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALV 64
            L  +LAP CP H    KLLTV+KTG NKGR+FYAC  P  + C+FF+WAEDNP L+
Sbjct:  125 LLEQLAPLCPGHSMPAKLLTVKKTGGNKGRRFYACCFPADQRCNFFLWAEDNPDLL 180          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A7S2Q2M5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q2M5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.000e-13
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 0
Query:   15 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELK 98
            P C +HQR  KLLTV+K T  NKGRKFY CS+PRGE CDFF W ED        L    +   +  R+ A     F +L +PEL+
Sbjct:  630 PMCTRHQRPCKLLTVKKNTKGNKGRKFYVCSMPRGEQCDFFKWEEDTVEATQRALLKSSSSSGFIARQVAASRIRFKELTVPELR 714          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: K0T7M4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T7M4_THAOC)

HSP 1 Score: 73.9 bits (180), Expect = 3.490e-13
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 0
Query:   15 PRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELK 98
            P C +HQR  KLLTV+K    NKGRKF+ CS+PRGE CDFF W ED        L    +   +  R+ A  +  F +L +PEL+
Sbjct:  551 PLCTRHQRPCKLLTVKKNNKGNKGRKFFVCSMPRGEQCDFFKWEEDTIEATQRALLQSSSSSGFIARQVAAAKTRFKELTVPELR 635          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A1Z5KAS2_FISSO (DNA helicase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAS2_FISSO)

HSP 1 Score: 72.8 bits (177), Expect = 8.790e-13
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 0
Query:   14 APRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 102
            AP C  HQ+  KL+TV+K T  NKGRKFYACS PRGE CD F WA+D    + + L   ++   +  R+   +      L +PEL+ ++ 
Sbjct:  258 APSCSGHQQPCKLVTVKKNTRGNKGRKFYACSFPRGEQCDHFEWADDTQEAINAALQNNDSTSGFIARQVTGYVNQIRSLTVPELRTLTE 347          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A6S8XWW2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XWW2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.570e-12
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 0
Query:   15 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELK 98
            P CP+H R  KLL V+K T  NKGRKFYACS+P+GE CDFF W +D      + L    +   +  R+ A   +    L +PEL+
Sbjct:  502 PVCPRHSRPCKLLIVKKNTTGNKGRKFYACSMPQGERCDFFQWEDDTVDATRTALLHSSSNSGFIARQVAAHVDRLKVLTVPELR 586          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFV2_9PHAE1.770e-4985.29DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G8A0_ECTSI1.550e-4886.87DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
W7TAC7_9STRA4.230e-2245.45DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7S4AC91_9STRA9.330e-1743.33Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A448ZEN4_9STRA6.110e-1542.86DNA helicase n=1 Tax=Pseudo-nitzschia multistriata... [more]
A0A482SRV8_9ARCH1.120e-1460.71RecQ family ATP-dependent DNA helicase n=1 Tax=arc... [more]
A0A7S2Q2M5_9STRA1.000e-1347.06Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0T7M4_THAOC3.490e-1344.71Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1Z5KAS2_FISSO8.790e-1341.11DNA helicase n=1 Tax=Fistulifera solaris TaxID=151... [more]
A0A6S8XWW2_9STRA5.570e-1243.53Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010666Zinc finger, GRF-typePFAMPF06839zf-GRFcoord: 16..59
e-value: 4.7E-16
score: 58.6
NoneNo IPR availablePANTHERPTHR22993FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASEcoord: 14..60
NoneNo IPR availablePANTHERPTHR22993:SF10ENDONUCLEASE 8-LIKE 3coord: 14..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132900contigH-elongata_contig132900:376..1703 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132900.2346.1mRNA_H-elongata_contig132900.2346.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig132900 376..1703 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig132900.2346.1 ID=prot_H-elongata_contig132900.2346.1|Name=mRNA_H-elongata_contig132900.2346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEG
CDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKV
SN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010666Znf_GRF