mRNA_H-elongata_contig132900.2346.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132900.2346.1
Unique NamemRNA_H-elongata_contig132900.2346.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A6H5JFV2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV2_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.770e-49
Identity = 87/102 (85.29%), Postives = 92/102 (90.20%), Query Frame = 1
Query:    1 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 306
            RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTL+ET  EWR+RK A   ++  KLPI ELKKV +
Sbjct:  970 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWRQRKNALLSKSLAKLPISELKKVDH 1071          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: D7G8A0_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A0_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.550e-48
Identity = 86/99 (86.87%), Postives = 90/99 (90.91%), Query Frame = 1
Query:    1 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKK 297
            RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTL+ET  EWR+RK A   ++  KLPI ELKK
Sbjct:  880 RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLQETGEEWRQRKNALLSKSLAKLPISELKK 978          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: W7TAC7_9STRA (DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAC7_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 4.230e-22
Identity = 50/110 (45.45%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   25 LFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSEL---------TLRETPG-------EWRRRKAARWEEAFLKLPIPELKKVSN 306
            L   +AP+C  H +  +LL V+K+G N+GR+FYACS PRGE CDFFMW EDNP LV +EL         T  +  G       EW  R+   W+  F K+ IPELK  S 
Sbjct:  696 LLKEVAPKCTHHLQTARLLRVKKSGANRGRRFYACSFPRGEECDFFMWVEDNPILVAAELGFSSVAASPTAGDIAGLDISELDEWTDRQVEGWKRRFQKMTIPELKDTSK 805          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A7S4AC91_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AC91_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 9.330e-17
Identity = 39/90 (43.33%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   40 APRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 306
            AP+C +HQR  KL+ V+KT   N+GR+FYACS+PRGE CD F WA+D      + L    +   +  R+ A + + F KL +PELK+ ++
Sbjct:   66 APKCARHQRPCKLIKVKKTTSGNRGREFYACSMPRGEQCDHFQWADDTVEAARNILAKNTSYSSFITRQVAAYVDRFRKLTVPELKEETS 155          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A448ZEN4_9STRA (DNA helicase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEN4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.110e-15
Identity = 39/91 (42.86%), Postives = 55/91 (60.44%), Query Frame = 1
Query:   37 LAPRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 306
            +AP+C +HQR  KL+ VRK T  NKGR+FYACS+PRGE CD F WA+D      + L    +   +  R+     + F  L +PELK+ ++
Sbjct:  610 VAPKCARHQRPCKLIKVRKNTSGNKGREFYACSMPRGEQCDHFQWADDTVEAARATLAKNSSYSSFVTRQVVAHVDRFRTLTVPELKRETS 700          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A482SRV8_9ARCH (RecQ family ATP-dependent DNA helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRV8_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 1.120e-14
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   25 LFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEGCDFFMWAEDNPALV 192
            L  +LAP CP H    KLLTV+KTG NKGR+FYAC  P  + C+FF+WAEDNP L+
Sbjct:  125 LLEQLAPLCPGHSMPAKLLTVKKTGGNKGRRFYACCFPADQRCNFFLWAEDNPDLL 180          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A7S2Q2M5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q2M5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.000e-13
Identity = 40/85 (47.06%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   43 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELK 294
            P C +HQR  KLLTV+K T  NKGRKFY CS+PRGE CDFF W ED        L    +   +  R+ A     F +L +PEL+
Sbjct:  630 PMCTRHQRPCKLLTVKKNTKGNKGRKFYVCSMPRGEQCDFFKWEEDTVEATQRALLKSSSSSGFIARQVAASRIRFKELTVPELR 714          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: K0T7M4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T7M4_THAOC)

HSP 1 Score: 73.9 bits (180), Expect = 3.490e-13
Identity = 38/85 (44.71%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   43 PRCPQHQRAGKLLTVRKTGL-NKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELK 294
            P C +HQR  KLLTV+K    NKGRKF+ CS+PRGE CDFF W ED        L    +   +  R+ A  +  F +L +PEL+
Sbjct:  551 PLCTRHQRPCKLLTVKKNNKGNKGRKFFVCSMPRGEQCDFFKWEEDTIEATQRALLQSSSSSGFIARQVAAAKTRFKELTVPELR 635          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A1Z5KAS2_FISSO (DNA helicase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAS2_FISSO)

HSP 1 Score: 72.8 bits (177), Expect = 8.790e-13
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 1
Query:   40 APRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKVSN 306
            AP C  HQ+  KL+TV+K T  NKGRKFYACS PRGE CD F WA+D    + + L   ++   +  R+   +      L +PEL+ ++ 
Sbjct:  258 APSCSGHQQPCKLVTVKKNTRGNKGRKFYACSFPRGEQCDHFEWADDTQEAINAALQNNDSTSGFIARQVTGYVNQIRSLTVPELRTLTE 347          
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Match: A0A6S8XWW2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8XWW2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.570e-12
Identity = 37/85 (43.53%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   43 PRCPQHQRAGKLLTVRK-TGLNKGRKFYACSLPRGEGCDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELK 294
            P CP+H R  KLL V+K T  NKGRKFYACS+P+GE CDFF W +D      + L    +   +  R+ A   +    L +PEL+
Sbjct:  502 PVCPRHSRPCKLLIVKKNTTGNKGRKFYACSMPQGERCDFFQWEDDTVDATRTALLHSSSNSGFIARQVAAHVDRLKVLTVPELR 586          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132900.2346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFV2_9PHAE1.770e-4985.29DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G8A0_ECTSI1.550e-4886.87DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
W7TAC7_9STRA4.230e-2245.45DNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7S4AC91_9STRA9.330e-1743.33Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A448ZEN4_9STRA6.110e-1542.86DNA helicase n=1 Tax=Pseudo-nitzschia multistriata... [more]
A0A482SRV8_9ARCH1.120e-1460.71RecQ family ATP-dependent DNA helicase n=1 Tax=arc... [more]
A0A7S2Q2M5_9STRA1.000e-1347.06Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
K0T7M4_THAOC3.490e-1344.71Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1Z5KAS2_FISSO8.790e-1341.11DNA helicase n=1 Tax=Fistulifera solaris TaxID=151... [more]
A0A6S8XWW2_9STRA5.570e-1243.53Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132900contigH-elongata_contig132900:376..1703 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.6
Seed ortholog evalue3.1e-42
Seed eggNOG ortholog2880.D7G8A0
KEGG koko:K10730,ko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.879974-CDS-H-elongata_contig132900:375..5421622929788.879974-CDS-H-elongata_contig132900:375..542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132900 376..542 -
1691679158.0367827-CDS-H-elongata_contig132900:375..5421691679158.0367827-CDS-H-elongata_contig132900:375..542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132900 376..542 -
1622929788.8963606-CDS-H-elongata_contig132900:1561..17031622929788.8963606-CDS-H-elongata_contig132900:1561..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132900 1562..1703 -
1691679158.0477142-CDS-H-elongata_contig132900:1561..17031691679158.0477142-CDS-H-elongata_contig132900:1561..1703Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132900 1562..1703 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132900.2346.1prot_H-elongata_contig132900.2346.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132900 376..1703 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132900.2346.1

>prot_H-elongata_contig132900.2346.1 ID=prot_H-elongata_contig132900.2346.1|Name=mRNA_H-elongata_contig132900.2346.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
RNAREEEELFLRLAPRCPQHQRAGKLLTVRKTGLNKGRKFYACSLPRGEG
CDFFMWAEDNPALVLSELTLRETPGEWRRRKAARWEEAFLKLPIPELKKV
SN*
back to top

mRNA from alignment at H-elongata_contig132900:376..1703-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132900.2346.1 ID=mRNA_H-elongata_contig132900.2346.1|Name=mRNA_H-elongata_contig132900.2346.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1328bp|location=Sequence derived from alignment at H-elongata_contig132900:376..1703- (Himanthalia elongata Himel1 dioecious)
AGAAACGCCCGCGAAGAAGAGGAGCTCTTCCTGAGACTCGCGCCTCGGTG CCCGCAGCACCAGAGAGCAGGGAAGCTGCTGACGGTTCGGAAGACGGGCC TCAACAAGGGCAGGAAGTTTTACGCCTGCAGCCTCCCTCGAGGTTCGTTT CCTTACAGTACAAGATGCATGATGCTGCCACGGCGCCGCTGGATCTTTTT GTCGTACATCCATGCATTTGTAATATATATATATAATTCACTGAACCGAT GCTCTTTTTCTTTCTTCCCTCCTTGAAACAAGGACACATGACCAGGCTCG AGTACTGTAACAAACGTTTTTTAGAGAAATATAATAAAAACGCTCCCAAG TACCTTTTGTGGTACTTGAAGTATATTAGACTAATATATAGTATAATTTA GTATAGTATAATATTGTACTACATCTGCATTATGGATATATGGATAATGC TATGCCTAACCACCACACACAGTTCACTCCCTAGGCTCTGGTTTGGCGTC TCCATATGATGAATAATCACATATGACGATTTTGTGCTTAAATGTGGTTA AAATATCCACATTCGAACCTGGCGATAGTTGGTCCCCTGGAATACCTCTC ATGGTGCTAAGAAGGCGTGGATGTTCGGAAGGTTCTAATGAGTTTGTATG TTTTTTAGCATAAATATAGTACAGTATAGTAGAGTATAATATAGTATAGT ATAATGGTACGTAGTAAAGTAAAGTCGCGCCCGCTGAGTGTACTATTGAT ACATATAACTCTCCAGTGTCCAGTGTCCAATCAACCCATGGGATGTCATG TCATGTCATGGCACTCTCCGGTTTGACGAAGCAAGCGCAAAGGATGATGT ATAACCGGTATGGTTCAAGTTTCATTCTTGTAAAACGCAGCTCGGCCGGT GAAAACTCGGCATATCGCTCCGTCCCTCCCGGCGTTGTTGGAAAATCGAC GTATCCCCCCATCCAATCTACGGTGTCGTTGACCAATCAGACGCGCGCGC AGCGGCGGAGACTTGCGATGTCCATCCCCCTAGCATTTGTTTTTGCGGGG ATCTCTCTCTATTTCTCCTTCGTAGCCCTCTTTTTGAGTACCCACGTCAC ACTGAAACAGACAAAAAAAAATTATACCTCTCCTCCCTCAATCAAAACCT CCCGTGGGCAGGAGAGGGCTGCGACTTCTTCATGTGGGCGGAGGATAACC CGGCCCTCGTGCTGTCAGAGCTCACGCTCCGAGAAACCCCCGGGGAGTGG CGCCGGCGGAAGGCGGCGCGATGGGAGGAGGCGTTTCTGAAGCTCCCAAT CCCCGAGCTTAAGAAGGTCTCGAACTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig132900:376..1703-

>mRNA_H-elongata_contig132900.2346.1 ID=mRNA_H-elongata_contig132900.2346.1|Name=mRNA_H-elongata_contig132900.2346.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig132900:376..1703- (Himanthalia elongata Himel1 dioecious)
AGAAACGCCCGCGAAGAAGAGGAGCTCTTCCTGAGACTCGCGCCTCGGTG
CCCGCAGCACCAGAGAGCAGGGAAGCTGCTGACGGTTCGGAAGACGGGCC
TCAACAAGGGCAGGAAGTTTTACGCCTGCAGCCTCCCTCGAGAGAAACGC
CCGCGAAGAAGAGGAGCTCTTCCTGAGACTCGCGCCTCGGTGCCCGCAGC
ACCAGAGAGCAGGGAAGCTGCTGACGGTTCGGAAGACGGGCCTCAACAAG
GGCAGGAAGTTTTACGCCTGCAGCCTCCCTCGAGGAGAGGGCTGCGACTT
CTTCATGTGGGCGGAGGATAACCCGGCCCTCGTGCTGTCAGAGCTCACGC
TCCGAGAAACCCCCGGGGAGTGGCGCCGGCGGAAGGCGGCGCGATGGGAG
GAGGCGTTTCTGAAGCTCCCAATCCCCGAGCTTAAGAAGGTCTCGAACTG
AGAGAGGGCTGCGACTTCTTCATGTGGGCGGAGGATAACCCGGCCCTCGT
GCTGTCAGAGCTCACGCTCCGAGAAACCCCCGGGGAGTGGCGCCGGCGGA
AGGCGGCGCGATGGGAGGAGGCGTTTCTGAAGCTCCCAATCCCCGAGCTT
AAGAAGGTCTCGAACTGA
back to top