mRNA_H-elongata_contig132754.2343.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132754.2343.1
Unique NamemRNA_H-elongata_contig132754.2343.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Match: A0A6H5J7V5_9PHAE (VHS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J7V5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.100e-32
Identity = 66/88 (75.00%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:   10 LSEVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERFMAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLPRR 273
            L+EV+R+LRK+LGS    VLSV+LTLAETLVKNC   V +E+ASERFMAA++KIARTYSFK +R S+AIADQ+LDIIQAWGEAFLPRR
Sbjct:   58 LTEVIRILRKKLGSSNTTVLSVALTLAETLVKNCHDPVHREIASERFMAAVAKIARTYSFKPNRQSLAIADQSLDIIQAWGEAFLPRR 145
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BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Match: A0A7S2CD66_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CD66_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.510e-22
Identity = 46/89 (51.69%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:    7 RLSEVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERFMAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLPRR 273
            RLSE VR++RKR+  + P+V+  SLTL ETLVKNC      +VA+++FM +M+ +ART+  K  R  + +AD+AL++IQAWGEAF+P+R
Sbjct:    2 RLSEAVRLIRKRIQHKNPRVVMTSLTLTETLVKNCHTAFHTQVATKKFMDSMAAVARTFGSKMGRDELEVADKALELIQAWGEAFMPQR 90
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BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Match: A0A4D9CTC8_9STRA (VHS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTC8_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.040e-21
Identity = 44/84 (52.38%), Postives = 67/84 (79.76%), Query Frame = 1 
Query:   16 EVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERFMAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLP 267
            E++R +RKRL  +  +V+ ++L L ET+VKNCG  V KEVA+ +FMA M+++ARTYS +T + ++ +AD+A+D+IQ+WGEAFLP
Sbjct:   64 EIIRQIRKRLQHRSTRVVHMALELIETVVKNCGPSVHKEVATPKFMATMARVARTYSERTGKENLQVADKAMDLIQSWGEAFLP 147
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BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Match: A0A835YSD0_9STRA (VHS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.400e-20
Identity = 44/88 (50.00%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:   10 LSEVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERFMAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLPRR 273
            ++EVVR +RKRL  +   V+ ++LTL ETLVKNCG  + +E+A E FM  M+ +A+ ++ +TSR S+ +A++ LD+IQ+WGEAFLP+R
Sbjct:   63 VAEVVRAVRKRLAHKSIPVVMLALTLTETLVKNCGMPLHREIAKENFMQDMTVLAKRHTTRTSRESLQVANKTLDLIQSWGEAFLPQR 150
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BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Match: A0A0P1AM73_PLAHL (VHS domain-containing protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AM73_PLAHL)

HSP 1 Score: 89.4 bits (220), Expect = 8.030e-19
Identity = 45/88 (51.14%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:   10 LSEVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERFMAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLPRR 273
            L E +R LR RLG    +V+ ++LTL E++VKNCG  V +E+A+E+FM+ M ++ RT+S K  R S+ IA + LD++QAWGEAFLP R
Sbjct:   78 LKESIRYLRLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATEQFMSEMEELHRTHSNKRGRQSMEIASRVLDMVQAWGEAFLPFR 165
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BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Match: W2PST9_PHYPN (VHS domain-containing protein n=56 Tax=Phytophthora TaxID=4783 RepID=W2PST9_PHYPN)

HSP 1 Score: 86.7 bits (213), Expect = 6.770e-18
Identity = 44/88 (50.00%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   10 LSEVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERFMAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLPRR 273
            L E +R L+ RLG    +V+ ++LTL E++VKNCG  V +E+A+E+FM  M  + RT++ K  R S+ IA + LD+IQAWGEAFLP R
Sbjct:    2 LKESIRYLKLRLGDPSSRVVILALTLTESIVKNCGGLVHQEIATEQFMGEMEALYRTHANKRGRDSMEIASRVLDMIQAWGEAFLPFR 89
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BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Match: A0A329S7I2_9STRA (VHS domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S7I2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.340e-17
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   10 LSEVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERFMAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLPRR 273
            L E +R L+ RLG    +V+ ++LTL E++VKNCG  V +E+A+E+FM  M  + RT++ K  R S+ IA + LD++QAWGEAFLP R
Sbjct:   82 LKESIRYLKLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATEQFMGEMETLYRTHANKRGRESMEIASRVLDMVQAWGEAFLPFR 169
[Close]
BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Match: A0A3M6VSQ9_9STRA (VHS domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VSQ9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.790e-17
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1 
Query:   10 LSEVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERFMAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLPRR 273
            L E VR LR RLG    +V+ ++LTL E++VKNCG  V +E+ASE FM  M  + R ++ K  R S+ IA + LD+IQAWGEAFLP R
Sbjct:   11 LKESVRYLRLRLGDPSSRVVVLALTLTESIVKNCGDLVHQEIASESFMNEMEALYRIHANKRGRTSMEIASRVLDMIQAWGEAFLPFR 98
[Close]
BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Match: G5AI13_PHYSP (VHS domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AI13_PHYSP)

HSP 1 Score: 85.5 bits (210), Expect = 1.800e-17
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:   10 LSEVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERFMAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLPRR 273
            L E +R L+ RLG    +V+ ++LTL E++VKNCG  V +E+A+E FM+ M  + RT++ K  R S+ IA + LD++QAWGEAFLP R
Sbjct:   82 LKESIRYLKLRLGDPSSRVVILALTLTESIVKNCGDLVHQEIATEPFMSEMEALYRTHASKRGRDSMEIASRVLDMVQAWGEAFLPYR 169
[Close]
BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Match: H3H7R0_PHYRM (VHS domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7R0_PHYRM)

HSP 1 Score: 85.1 bits (209), Expect = 2.460e-17
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:   10 LSEVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERFMAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLPRR 273
            L E +R L+ RLG    +V+ ++LTL E++VKNCG  V +EVA+E FM  M  + RT++ K  R S+ IA + LD++QAWGEAFLP R
Sbjct:   83 LKESIRYLKLRLGDPSTRVVILALTLTESIVKNCGDLVHQEVATEPFMGEMEALYRTHANKRGRESMEIASRVLDMVQAWGEAFLPFR 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132754.2343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7V5_9PHAE1.100e-3275.00VHS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2CD66_9STRA4.510e-2251.69Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A4D9CTC8_9STRA3.040e-2152.38VHS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A835YSD0_9STRA9.400e-2050.00VHS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A0P1AM73_PLAHL8.030e-1951.14VHS domain-containing protein n=1 Tax=Plasmopara h... [more]
W2PST9_PHYPN6.770e-1850.00VHS domain-containing protein n=56 Tax=Phytophthor... [more]
A0A329S7I2_9STRA1.340e-1748.86VHS domain-containing protein n=2 Tax=Phytophthora... [more]
A0A3M6VSQ9_9STRA1.790e-1752.27VHS domain-containing protein n=2 Tax=Peronospora ... [more]
G5AI13_PHYSP1.800e-1748.86VHS domain-containing protein n=1 Tax=Phytophthora... [more]
H3H7R0_PHYRM2.460e-1750.00VHS domain-containing protein n=1 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132754contigH-elongata_contig132754:535..1284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.9e-29
Seed eggNOG ortholog2880.D7FWE4
Preferred nameGGA2
KEGG koko:K12346,ko:K12404,ko:K20524
KEGG TC2.A.55.1
KEGG Pathwayko04142,map04142
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005938,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0015031,GO:0015629,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019538,GO:0019941,GO:0030029,GO:0030036,GO:0030163,GO:0030479,GO:0030863,GO:0030864,GO:0031984,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042886,GO:0043130,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0061645,GO:0070273,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097435,GO:0098657,GO:0098791,GO:0099568,GO:1901564,GO:1901565,GO:1901575,GO:1901981
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG1087@1,KOG1087@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-09_003990.1
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.6257842-CDS-H-elongata_contig132754:534..6301622929788.6257842-CDS-H-elongata_contig132754:534..630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132754 535..630 -
1691679157.9791324-CDS-H-elongata_contig132754:534..6301691679157.9791324-CDS-H-elongata_contig132754:534..630Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132754 535..630 -
1622929788.643348-CDS-H-elongata_contig132754:1107..12841622929788.643348-CDS-H-elongata_contig132754:1107..1284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132754 1108..1284 -
1691679157.992082-CDS-H-elongata_contig132754:1107..12841691679157.992082-CDS-H-elongata_contig132754:1107..1284Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132754 1108..1284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132754.2343.1prot_H-elongata_contig132754.2343.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132754 535..1284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132754.2343.1

>prot_H-elongata_contig132754.2343.1 ID=prot_H-elongata_contig132754.2343.1|Name=mRNA_H-elongata_contig132754.2343.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
PRRLSEVVRVLRKRLGSQEPQVLSVSLTLAETLVKNCGAHVQKEVASERF
MAAMSKIARTYSFKTSRASIAIADQALDIIQAWGEAFLPRR
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mRNA from alignment at H-elongata_contig132754:535..1284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132754.2343.1 ID=mRNA_H-elongata_contig132754.2343.1|Name=mRNA_H-elongata_contig132754.2343.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=750bp|location=Sequence derived from alignment at H-elongata_contig132754:535..1284- (Himanthalia elongata Himel1 dioecious)
CCCCGAAGGTTGTCGGAAGTCGTCCGAGTCCTACGCAAGCGACTTGGGTC
ACAGGAACCGCAAGTTCTCTCGGTGAGCTTGACACTCGCCGAGACTCTCG
TCAAAAACTGTGGCGCGCACGTCCAGAAAGAAGTCGCTTCGGAGCGTTTC
ATGGCCGCCATGTCAAAGATAGCGAGGGTGAGCGGTTATGAGAAAATAAT
ATTTTACGAGAAAATTCGTCGGGCTAGGAGAAGGACATGGACCCTGACAG
TGTTGGTTCAAGGTTGAGGAAAAGCTTTGGGAATTGGTATCGAGGGATGT
CCGCCACGCCAGAGTAAGGCGCTTGCTTCTCGCCCATGATGTACTAATAG
TGTAGACAGGAGAATCGCGGGCTTTCCTGTCGAAATTCTACGTGAACGTT
TACTACGCTCTACTCTTGGGTCGACCTTGACATGGTGGTGAAAGAAGGGA
GCCGTCTTCCATGTGCACTCTGCTGACGTTTCCCTCATCCCTCCAGTGAA
AAACGCCTTTTTGGTGTCTATGTTGCCCATGACGTAGCGCCAGATCGTGT
TTCACCGCGAAGAGGTAGCTATGCTGAAATAAAATATATTACGCACCCAT
TAAAAAACCGTCATTCTTTTTCTTCTTATTATTTTATCACTATTGAAATA
ACAGACGTACTCGTTCAAGACCAGTCGAGCAAGCATTGCCATCGCCGATC
AAGCGCTAGACATCATCCAGGCCTGGGGAGAAGCGTTCTTACCTCGACGG
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Coding sequence (CDS) from alignment at H-elongata_contig132754:535..1284-

>mRNA_H-elongata_contig132754.2343.1 ID=mRNA_H-elongata_contig132754.2343.1|Name=mRNA_H-elongata_contig132754.2343.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig132754:535..1284- (Himanthalia elongata Himel1 dioecious)
CCCCGAAGGTTGTCGGAAGTCGTCCGAGTCCTACGCAAGCGACTTGGGTC
ACAGGAACCGCAAGTTCTCTCGGTGAGCTTGACACTCGCCGAGACTCTCG
TCAAAAACTGTGGCGCGCACGTCCAGAAAGAAGTCGCTTCGGAGCGTTTC
ATGGCCGCCATGTCAAAGATAGCGAGGCCCCGAAGGTTGTCGGAAGTCGT
CCGAGTCCTACGCAAGCGACTTGGGTCACAGGAACCGCAAGTTCTCTCGG
TGAGCTTGACACTCGCCGAGACTCTCGTCAAAAACTGTGGCGCGCACGTC
CAGAAAGAAGTCGCTTCGGAGCGTTTCATGGCCGCCATGTCAAAGATAGC
GAGGACGTACTCGTTCAAGACCAGTCGAGCAAGCATTGCCATCGCCGATC
AAGCGCTAGACATCATCCAGGCCTGGGGAGAAGCGTTCTTACCTCGACGG
ACGTACTCGTTCAAGACCAGTCGAGCAAGCATTGCCATCGCCGATCAAGC
GCTAGACATCATCCAGGCCTGGGGAGAAGCGTTCTTACCTCGACGG
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