prot_H-elongata_contig132636.2334.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig132636.2334.1
Unique Nameprot_H-elongata_contig132636.2334.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length117
Homology
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: D7FNY3_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY3_ECTSI)

HSP 1 Score: 196 bits (499), Expect = 2.440e-57
Identity = 97/113 (85.84%), Postives = 102/113 (90.27%), Query Frame = 0
Query:    1 MCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAE 113
            +CQTYGVEAARASIVAEI GVFG YGI+VDPRHLGLVADHMTF GGYR +NR GMADFSSPC QMSFETTT F+ KAAVA  SD+LKSPSARIVMGRVG FGTGMFDLRQPAE
Sbjct:  528 VCQTYGVEAARASIVAEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGNFGTGMFDLRQPAE 640          
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A6H5KJ16_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ16_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 1.070e-55
Identity = 96/113 (84.96%), Postives = 103/113 (91.15%), Query Frame = 0
Query:    1 MCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAE 113
            +CQTYGVEAARASIV+EI GVFG YGI+VDPRHLGLVADHMTF GGYR +NR GMADFSSPC QMSFETTT F+ KAAVA  SD+LKSPSARIVMGRVG+FGTGMFDLRQPAE
Sbjct: 1757 VCQTYGVEAARASIVSEITGVFGAYGIAVDPRHLGLVADHMTFDGGYRPLNRAGMADFSSPCLQMSFETTTDFMAKAAVARSSDRLKSPSARIVMGRVGSFGTGMFDLRQPAE 1869          
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A836C8M0_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 3.620e-43
Identity = 79/114 (69.30%), Postives = 90/114 (78.95%), Query Frame = 0
Query:    1 MCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAEI 114
            M  +YGVEA RA+I  EIA VF VYGI VD RHLGL+AD+MTFYGGYRAMNRIGM D +SP  QMSFETT +FL +AA+    +KLKSPSARIVMG+VG FGTG FDL  P E+
Sbjct: 1548 MLMSYGVEACRAAITKEIAAVFAVYGIGVDARHLGLIADYMTFYGGYRAMNRIGMKDIASPFLQMSFETTASFLVQAALDSKVEKLKSPSARIVMGQVGDFGTGQFDLMVPVEV 1661          
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A7S2G4R6_9STRA (DNA-directed RNA polymerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4R6_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.260e-39
Identity = 72/106 (67.92%), Postives = 85/106 (80.19%), Query Frame = 0
Query:    4 TYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMAD-FSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDL 108
            TYGVEAAR +IVAE+ GVF VYGIS+D RHL L+AD MTF GGYRA NR+G+A+  SSP  QMSFETT  FLT+AAV G  D+L+SPSARIVMG++   GTG F+L
Sbjct:   77 TYGVEAARGAIVAEVRGVFDVYGISIDARHLSLIADTMTFSGGYRAFNRLGIAEGSSSPYLQMSFETTATFLTEAAVRGDPDRLQSPSARIVMGQLAKQGTGAFEL 182          
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: W7TZA0_9STRA (DNA-directed RNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZA0_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.000e-38
Identity = 73/114 (64.04%), Postives = 90/114 (78.95%), Query Frame = 0
Query:    1 MCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAEI 114
            M QTYGVEAARA+IV EI GVFG YGI+VDPRHLGLVAD MT+ GG+RA+NRIGM++ SSP  QMSFETT  FLT+AA+    D L++PSA++VMG+    GTG FD+  P ++
Sbjct: 1146 MHQTYGVEAARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTGSFDIMIPVDM 1259          
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: K8YRY5_NANGC (DNA-directed RNA polymerase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YRY5_NANGC)

HSP 1 Score: 147 bits (371), Expect = 1.020e-38
Identity = 73/114 (64.04%), Postives = 90/114 (78.95%), Query Frame = 0
Query:    1 MCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAEI 114
            M QTYGVEAARA+IV EI GVFG YGI+VDPRHLGLVAD MT+ GG+RA+NRIGM++ SSP  QMSFETT  FLT+AA+    D L++PSA++VMG+    GTG FD+  P ++
Sbjct: 1736 MHQTYGVEAARATIVKEIKGVFGAYGIAVDPRHLGLVADFMTYQGGFRALNRIGMSEVSSPFLQMSFETTATFLTEAALNSEKDDLQTPSAKLVMGQPTGNGTGSFDIMIPVDM 1849          
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A7R9ZT77_9STRA (DNA-directed RNA polymerase n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZT77_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.130e-38
Identity = 69/104 (66.35%), Postives = 80/104 (76.92%), Query Frame = 0
Query:    5 YGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDL 108
            YGVEAAR +IV ++  VFG YGI VDPRHL L+AD+MT+ GGY AMNRIGM D SSP  QMSFETT  FLT+AA++G  D+LKSPSA IV+GR    GTG F L
Sbjct:   41 YGVEAARNNIVDQVRSVFGAYGIEVDPRHLTLIADYMTYSGGYTAMNRIGMKDTSSPFLQMSFETTATFLTQAALSGTCDQLKSPSANIVVGRPIRHGTGAFSL 144          
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A7S0N8V3_9CHLO (DNA-directed RNA polymerase n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N8V3_9CHLO)

HSP 1 Score: 133 bits (335), Expect = 1.520e-37
Identity = 68/110 (61.82%), Postives = 81/110 (73.64%), Query Frame = 0
Query:    1 MCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQ 110
            M QTYG+EAARA++V E++GVFGVYGI VD RHL L+AD MTF G YRA NR+G+   +SP  +MSFET T FLT A + G +D + SPSARIVMGRV   GTG   L Q
Sbjct:   25 MMQTYGIEAARAALVKEVSGVFGVYGIGVDNRHLSLIADFMTFSGDYRACNRMGINSSTSPFLKMSFETATNFLTDATLHGQTDTMGSPSARIVMGRVVEMGTGAISLLQ 134          
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A7S1CFD6_9STRA (DNA-directed RNA polymerase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFD6_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.270e-37
Identity = 72/110 (65.45%), Postives = 86/110 (78.18%), Query Frame = 0
Query:    4 TYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAE 113
            TYGVEAAR++I  E+  VFGVYGISVDPRHLGL+AD+MT  GGYRA+NRIGM   +SP  +MSFETTT FLT+A + G ++ + SPSARIVMGRV   GTG FDL  P +
Sbjct: 1662 TYGVEAARSAITKEVTAVFGVYGISVDPRHLGLIADYMTSSGGYRALNRIGMDARASPYLKMSFETTTKFLTQACLHGEAENMDSPSARIVMGRVVGSGTGAFDLLAPLD 1771          
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Match: A0A507ES14_9FUNG (DNA-directed RNA polymerase subunit n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507ES14_9FUNG)

HSP 1 Score: 143 bits (361), Expect = 2.270e-37
Identity = 74/111 (66.67%), Postives = 85/111 (76.58%), Query Frame = 0
Query:    3 QTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAMNRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGTFGTGMFDLRQPAE 113
            +TYGVEAARASI+ EI  VFGVYGISVD RHL L+AD+MTF GGY+A NRIGM    SP  QMSFETT  FLT A V+G  D L+SPSARIV+G+V   GTG FD+R P +
Sbjct: 1694 KTYGVEAARASIMNEIGAVFGVYGISVDRRHLSLIADYMTFEGGYKAFNRIGMNSNPSPFAQMSFETTAKFLTTATVSGDVDTLESPSARIVLGQVVRGGTGAFDIRVPLQ 1804          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132636.2334.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNY3_ECTSI2.440e-5785.84DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJ16_9PHAE1.070e-5584.96DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
A0A836C8M0_9STRA3.620e-4369.30DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2G4R6_9STRA1.260e-3967.92DNA-directed RNA polymerase n=1 Tax=Florenciella p... [more]
W7TZA0_9STRA1.000e-3864.04DNA-directed RNA polymerase n=1 Tax=Nannochloropsi... [more]
K8YRY5_NANGC1.020e-3864.04DNA-directed RNA polymerase subunit n=2 Tax=Monodo... [more]
A0A7R9ZT77_9STRA1.130e-3866.35DNA-directed RNA polymerase n=1 Tax=Craspedostauro... [more]
A0A7S0N8V3_9CHLO1.520e-3761.82DNA-directed RNA polymerase n=1 Tax=Pyramimonas ob... [more]
A0A7S1CFD6_9STRA2.270e-3765.45DNA-directed RNA polymerase n=1 Tax=Bicosoecida sp... [more]
A0A507ES14_9FUNG2.270e-3766.67DNA-directed RNA polymerase subunit n=1 Tax=Chytri... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.150.390coord: 63..106
e-value: 1.9E-8
score: 35.9
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..110
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..112
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 1..60
e-value: 2.4E-13
score: 50.1
IPR015699DNA-directed RNA pol I, largest subunitPANTHERPTHR19376:SF11DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1coord: 1..110

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132636contigH-elongata_contig132636:1212..1562 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132636.2334.1mRNA_H-elongata_contig132636.2334.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig132636 1212..1586 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig132636.2334.1 ID=prot_H-elongata_contig132636.2334.1|Name=mRNA_H-elongata_contig132636.2334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MCQTYGVEAARASIVAEIAGVFGVYGISVDPRHLGLVADHMTFYGGYRAM
NRIGMADFSSPCQQMSFETTTAFLTKAAVAGHSDKLKSPSARIVMGRVGT
FGTGMFDLRQPAEITV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5
IPR015699DNA-dir_RNA_pol1_lsu