mRNA_H-elongata_contig132494.2325.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig132494.2325.1
Unique NamemRNA_H-elongata_contig132494.2325.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: D7FLP0_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP0_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.500e-40
Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 1
Query:    1 VLGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIP 249
            + GGGKIAV GKNVKICYEGCFPDGRVFDKN +R++PL+FR+GM+ VI GMDRGVEGMRVGGSREISIPAALGYGARG GPIP
Sbjct:  270 MFGGGKIAVPGKNVKICYEGCFPDGRVFDKNDNRRRPLRFRVGMKNVIAGMDRGVEGMRVGGSREISIPAALGYGARGTGPIP 352          
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A6H5JKN3_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN3_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.120e-40
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 1
Query:    1 VLGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIP 249
            + GGGKIAV GKNVKICYEGCFPDGRVFDKN +R++PLQFR+GM+ VI GMDRGVEGMRVGGSREISIPAALGYGARG GPIP
Sbjct:  385 MFGGGKIAVPGKNVKICYEGCFPDGRVFDKNNNRRRPLQFRVGMKNVIAGMDRGVEGMRVGGSREISIPAALGYGARGTGPIP 467          
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A835YI76_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI76_9STRA)

HSP 1 Score: 115 bits (289), Expect = 1.980e-28
Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 VLGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPI 246
            VLG GK+A  GK VK+ YEG FPDGRVFDKN +R+ PL FR+G+ +VI GM+RGVEGMRVGG RE+ IPAAL YG  G GPI
Sbjct:  360 VLGAGKVASSGKQVKVLYEGSFPDGRVFDKNFNRRAPLGFRVGLGRVIKGMERGVEGMRVGGQREVYIPAALAYGKSGAGPI 441          
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A7S2JPD6_9STRA (Peptidylprolyl isomerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JPD6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 1.670e-23
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 VLGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIPG 252
            ++GGG +   G+ V I YEG   DG VFD+  +RK PL FR G  +VI G++RG++GMR GG REI IP ALGYG +G GPIPG
Sbjct:   88 IIGGGPLIKSGRRVSILYEGKLTDGTVFDRKKNRKSPLMFRQGTGQVIRGLERGLDGMRTGGEREIIIPPALGYGEKGSGPIPG 171          
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A7S2D527_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D527_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.790e-23
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1
Query:    1 VLGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIP 249
            ++G G  A LG+ VK+ YEG   DG VFDK    + P  FRLG+++V+ GMD+GVEGM+VGG REI IP A+GYG +  GPIP
Sbjct:   65 MIGTGPPAPLGRTVKLLYEGTLKDGTVFDKKDKARSPFTFRLGLREVVAGMDKGVEGMKVGGHREIKIPPAMGYGNKAVGPIP 147          
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A7S1UBD1_9STRA (Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBD1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 4.880e-21
Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 VLGGGKIAVLGKNVKICYEGCFP--DGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARG 234
            ++G GK    GK V++ YEG     DGR+FD NM+R +P +FR+G ++VI G+DRGVEGM+VGG R I++PAALGYGA+G
Sbjct:  224 IIGNGKPVRKGKQVRLTYEGFLKKEDGRMFDSNMNRGRPFKFRMGTREVIEGLDRGVEGMKVGGVRRITVPAALGYGAKG 303          
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A7S3PV70_9STRA (Peptidylprolyl isomerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV70_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.600e-20
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    7 GGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIPGKPRSGFS 273
            G G     G+ V I Y G F DG+VFDKN S+ KPL FRLG  +VI G+DRG+EGM+V G R I+IP+ +GYG++G G IPG  +  FS
Sbjct:  316 GNGSSCKTGRKVSINYVGTFLDGKVFDKNQSKGKPLTFRLGTGEVIKGLDRGLEGMKVNGERIITIPSEMGYGSKGSGNIPGDTKLCFS 404          
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A7S2HCT7_9STRA (Peptidylprolyl isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HCT7_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.140e-20
Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    4 LGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIP 249
            +G G     G  V I YEG   DG  FDK  +R+ PL FR+G+++V+ GMD G+EGMRVGG REI IPAA+GYG +  GPIP
Sbjct:  314 IGAGYAVKSGAQVNILYEGTLTDGSTFDKRQNRRSPLSFRVGLREVVPGMDIGLEGMRVGGIREIHIPAAMGYGKKQTGPIP 395          
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A6U0VPV4_9STRA (Peptidylprolyl isomerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VPV4_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 8.700e-20
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 VLGGGKIAVLGKNVKICYEGCF--PDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARG 234
            V+G G     GK V++ YEG     DGR+FD NM+R +P +FRLG ++VI GMDRGVEGMR GG R I++P ALGYGA+G
Sbjct:  243 VIGNGNPLRKGKQVRLVYEGFLGKEDGRMFDSNMNRGRPFKFRLGTREVIEGMDRGVEGMREGGIRRITVPPALGYGAKG 322          
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A1G1IH55_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nitrospirae bacterium RIFCSPLOWO2_02_FULL_62_14 TaxID=1801717 RepID=A0A1G1IH55_9BACT)

HSP 1 Score: 85.5 bits (210), Expect = 1.730e-19
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    4 LGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPG 240
            +G G  A  G+ V + Y G   DG+ FD ++ RK+P +F LGM +VI G D GV+GM+VGG R+++IPAALGYG+RG G
Sbjct:   17 VGTGAEAKAGQTVSVHYTGWLTDGKKFDSSVDRKQPFEFPLGMGRVIKGWDEGVQGMKVGGKRKLTIPAALGYGSRGAG 95          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLP0_ECTSI1.500e-4084.34Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JKN3_9PHAE2.120e-4085.54Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
A0A835YI76_9STRA1.980e-2868.29Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A7S2JPD6_9STRA1.670e-2355.95Peptidylprolyl isomerase n=1 Tax=Leptocylindrus da... [more]
A0A7S2D527_9STRA1.790e-2355.42Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]
A0A7S1UBD1_9STRA4.880e-2156.25Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva ... [more]
A0A7S3PV70_9STRA1.600e-2053.93Peptidylprolyl isomerase n=1 Tax=Chaetoceros debil... [more]
A0A7S2HCT7_9STRA3.140e-2054.88Peptidylprolyl isomerase n=1 Tax=Dictyocha speculu... [more]
A0A6U0VPV4_9STRA8.700e-2057.50Peptidylprolyl isomerase n=1 Tax=Pinguiococcus pyr... [more]
A0A1G1IH55_9BACT1.730e-1951.90Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nitros... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig132494contigH-elongata_contig132494:78..1150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size301
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig132494.2325.1prot_H-elongata_contig132494.2325.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig132494 137..1133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.629762-UTR-H-elongata_contig132494:77..1361622929786.629762-UTR-H-elongata_contig132494:77..136Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132494 78..136 +
1691679157.2462547-UTR-H-elongata_contig132494:77..1361691679157.2462547-UTR-H-elongata_contig132494:77..136Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132494 78..136 +
1622929786.724258-UTR-H-elongata_contig132494:1133..11501622929786.724258-UTR-H-elongata_contig132494:1133..1150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132494 1134..1150 +
1691679157.2857847-UTR-H-elongata_contig132494:1133..11501691679157.2857847-UTR-H-elongata_contig132494:1133..1150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig132494 1134..1150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929786.6498456-CDS-H-elongata_contig132494:136..2041622929786.6498456-CDS-H-elongata_contig132494:136..204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132494 137..204 +
1691679157.2590914-CDS-H-elongata_contig132494:136..2041691679157.2590914-CDS-H-elongata_contig132494:136..204Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132494 137..204 +
1622929786.6959257-CDS-H-elongata_contig132494:693..7841622929786.6959257-CDS-H-elongata_contig132494:693..784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132494 694..784 +
1691679157.2709818-CDS-H-elongata_contig132494:693..7841691679157.2709818-CDS-H-elongata_contig132494:693..784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132494 694..784 +
1622929786.7127404-CDS-H-elongata_contig132494:1067..11331622929786.7127404-CDS-H-elongata_contig132494:1067..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132494 1068..1133 +
1691679157.2780247-CDS-H-elongata_contig132494:1067..11331691679157.2780247-CDS-H-elongata_contig132494:1067..1133Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig132494 1068..1133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig132494.2325.1

>prot_H-elongata_contig132494.2325.1 ID=prot_H-elongata_contig132494.2325.1|Name=mRNA_H-elongata_contig132494.2325.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MLPRRARLRQKHEPQEAAAVPSRHAKGDRGHGQGGGGHARGRQPRDLYTG
GLGVRRAWTGPDSGQTKIWFFGWS*
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mRNA from alignment at H-elongata_contig132494:78..1150+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig132494.2325.1 ID=mRNA_H-elongata_contig132494.2325.1|Name=mRNA_H-elongata_contig132494.2325.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1073bp|location=Sequence derived from alignment at H-elongata_contig132494:78..1150+ (Himanthalia elongata Himel1 dioecious)
GTCCTGGGAGGCGGGAAGATAGCGGTTCTAGGAAAGAACGTGAAGATTTG CTACGAGGGATGCTTCCCCGACGGGCGCGTCTTCGACAAAAACATGAGCC GCAAGAAGCCGCTGCAGTTCCGTCTCGGTGAGGATTGAGGAGGAGACGTT TCAATCACCGAGGCGTGTACCCACGTGCAGCGCGCGCGCAACTTGCTCTA AATTGTCTCCTAGGTTGTCGGTGTTGCTGGATTTTGGGGACTTGTCGTTT AAGATATCCATAATACCCCTGTAATATGACGGTGTGGCTACGCCCGGTCA ACGGAAAATGGACTTCGTGTGGCGCAAGGAGTCGCCCACTAACAACCATA GCTGCCGAGTAAGCGAACGACTCCGTGTGGACGTAGTGTACTATTTGACC TAAACCCCACATCGTGATGACCTTGCACGCTTGTTGACGATTTTGTCTGA TTATTATTGTCATGGCGCCTAAATAATTAATTTCGCTTCATTTTTGTATT GATTCGCAAGTAATATCGGGTCTCCTAGGGACCCTTTTAATGTCCATCCT AACCCCCCCCCTCTTGTTTCGATTCGTGATTGGGTGGGGAATATTGTTTT TGGTATGGCGGGACAGGCATGCAAAAGGTGATCGTGGGCATGGACAGGGG GGTGGAGGGCATGCGCGTGGGCGGCAGCCGAGAGATCTCTATACCGGCGG CCTTGGGGTGAGAAGAGAAAAAACGTTCGATAGCGATTACGTAATGAAAA ACAAACATAAAACGGTGTAACGTTGAACGTATCCATTGCCGATAACTATC CGGAATTTCGACGTCAAGCGCGTCCCAAAGTTGCGCTACGATTGTCGTGC AAGCCTGAGGTCTTCGCCTCGACACCCGCGCCCCCCGCGTAATGATCATG GGTTGAACTTGAGGGTGCTCTCCTCGGGAAGGGGGGGGGGGGAGACGGAC GCCGTCCCTCCTTACCGTGGTCGCTTCCGGCTATGACAAGGTACGGCGCG CGTGGACCGGGCCCGATTCCGGGCAAACCAAGATCTGGTTTTTCGGGTGG AGCTGATCGACGTCGGGGGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig132494:78..1150+

>mRNA_H-elongata_contig132494.2325.1 ID=mRNA_H-elongata_contig132494.2325.1|Name=mRNA_H-elongata_contig132494.2325.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig132494:78..1150+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCCCCGACGGGCGCGTCTTCGACAAAAACATGAGCCGCAAGAAGC
CGCTGCAGTTCCGTCTCGATGCTTCCCCGACGGGCGCGTCTTCGACAAAA
ACATGAGCCGCAAGAAGCCGCTGCAGTTCCGTCTCGGCATGCAAAAGGTG
ATCGTGGGCATGGACAGGGGGGTGGAGGGCATGCGCGTGGGCGGCAGCCG
AGAGATCTCTATACCGGCGGCCTTGGGGCATGCAAAAGGTGATCGTGGGC
ATGGACAGGGGGGTGGAGGGCATGCGCGTGGGCGGCAGCCGAGAGATCTC
TATACCGGCGGCCTTGGGGTACGGCGCGCGTGGACCGGGCCCGATTCCGG
GCAAACCAAGATCTGGTTTTTCGGGTGGAGCTGAGTACGGCGCGCGTGGA
CCGGGCCCGATTCCGGGCAAACCAAGATCTGGTTTTTCGGGTGGAGCTGA
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