mRNA_H-elongata_contig132494.2325.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: D7FLP0_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP0_ECTSI) HSP 1 Score: 146 bits (368), Expect = 1.500e-40 Identity = 70/83 (84.34%), Postives = 77/83 (92.77%), Query Frame = 1
Query: 1 VLGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIP 249
+ GGGKIAV GKNVKICYEGCFPDGRVFDKN +R++PL+FR+GM+ VI GMDRGVEGMRVGGSREISIPAALGYGARG GPIP
Sbjct: 270 MFGGGKIAVPGKNVKICYEGCFPDGRVFDKNDNRRRPLRFRVGMKNVIAGMDRGVEGMRVGGSREISIPAALGYGARGTGPIP 352
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A6H5JKN3_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKN3_9PHAE) HSP 1 Score: 148 bits (373), Expect = 2.120e-40 Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 1
Query: 1 VLGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIP 249
+ GGGKIAV GKNVKICYEGCFPDGRVFDKN +R++PLQFR+GM+ VI GMDRGVEGMRVGGSREISIPAALGYGARG GPIP
Sbjct: 385 MFGGGKIAVPGKNVKICYEGCFPDGRVFDKNNNRRRPLQFRVGMKNVIAGMDRGVEGMRVGGSREISIPAALGYGARGTGPIP 467
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A835YI76_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI76_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.980e-28 Identity = 56/82 (68.29%), Postives = 65/82 (79.27%), Query Frame = 1
Query: 1 VLGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPI 246
VLG GK+A GK VK+ YEG FPDGRVFDKN +R+ PL FR+G+ +VI GM+RGVEGMRVGG RE+ IPAAL YG G GPI
Sbjct: 360 VLGAGKVASSGKQVKVLYEGSFPDGRVFDKNFNRRAPLGFRVGLGRVIKGMERGVEGMRVGGQREVYIPAALAYGKSGAGPI 441
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A7S2JPD6_9STRA (Peptidylprolyl isomerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JPD6_9STRA) HSP 1 Score: 97.8 bits (242), Expect = 1.670e-23 Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 1
Query: 1 VLGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIPG 252
++GGG + G+ V I YEG DG VFD+ +RK PL FR G +VI G++RG++GMR GG REI IP ALGYG +G GPIPG
Sbjct: 88 IIGGGPLIKSGRRVSILYEGKLTDGTVFDRKKNRKSPLMFRQGTGQVIRGLERGLDGMRTGGEREIIIPPALGYGEKGSGPIPG 171
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A7S2D527_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D527_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.790e-23 Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1
Query: 1 VLGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIP 249
++G G A LG+ VK+ YEG DG VFDK + P FRLG+++V+ GMD+GVEGM+VGG REI IP A+GYG + GPIP
Sbjct: 65 MIGTGPPAPLGRTVKLLYEGTLKDGTVFDKKDKARSPFTFRLGLREVVAGMDKGVEGMKVGGHREIKIPPAMGYGNKAVGPIP 147
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A7S1UBD1_9STRA (Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBD1_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 4.880e-21 Identity = 45/80 (56.25%), Postives = 61/80 (76.25%), Query Frame = 1
Query: 1 VLGGGKIAVLGKNVKICYEGCFP--DGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARG 234
++G GK GK V++ YEG DGR+FD NM+R +P +FR+G ++VI G+DRGVEGM+VGG R I++PAALGYGA+G
Sbjct: 224 IIGNGKPVRKGKQVRLTYEGFLKKEDGRMFDSNMNRGRPFKFRMGTREVIEGLDRGVEGMKVGGVRRITVPAALGYGAKG 303
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A7S3PV70_9STRA (Peptidylprolyl isomerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PV70_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 1.600e-20 Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 7 GGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIPGKPRSGFS 273
G G G+ V I Y G F DG+VFDKN S+ KPL FRLG +VI G+DRG+EGM+V G R I+IP+ +GYG++G G IPG + FS
Sbjct: 316 GNGSSCKTGRKVSINYVGTFLDGKVFDKNQSKGKPLTFRLGTGEVIKGLDRGLEGMKVNGERIITIPSEMGYGSKGSGNIPGDTKLCFS 404
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A7S2HCT7_9STRA (Peptidylprolyl isomerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HCT7_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 3.140e-20 Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 4 LGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPGPIP 249
+G G G V I YEG DG FDK +R+ PL FR+G+++V+ GMD G+EGMRVGG REI IPAA+GYG + GPIP
Sbjct: 314 IGAGYAVKSGAQVNILYEGTLTDGSTFDKRQNRRSPLSFRVGLREVVPGMDIGLEGMRVGGIREIHIPAAMGYGKKQTGPIP 395
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A6U0VPV4_9STRA (Peptidylprolyl isomerase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VPV4_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 8.700e-20 Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query: 1 VLGGGKIAVLGKNVKICYEGCF--PDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARG 234
V+G G GK V++ YEG DGR+FD NM+R +P +FRLG ++VI GMDRGVEGMR GG R I++P ALGYGA+G
Sbjct: 243 VIGNGNPLRKGKQVRLVYEGFLGKEDGRMFDSNMNRGRPFKFRLGTREVIEGMDRGVEGMREGGIRRITVPPALGYGAKG 322
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Match: A0A1G1IH55_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nitrospirae bacterium RIFCSPLOWO2_02_FULL_62_14 TaxID=1801717 RepID=A0A1G1IH55_9BACT) HSP 1 Score: 85.5 bits (210), Expect = 1.730e-19 Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = 1
Query: 4 LGGGKIAVLGKNVKICYEGCFPDGRVFDKNMSRKKPLQFRLGMQKVIVGMDRGVEGMRVGGSREISIPAALGYGARGPG 240
+G G A G+ V + Y G DG+ FD ++ RK+P +F LGM +VI G D GV+GM+VGG R+++IPAALGYG+RG G
Sbjct: 17 VGTGAEAKAGQTVSVHYTGWLTDGKKFDSSVDRKQPFEFPLGMGRVIKGWDEGVQGMKVGGKRKLTIPAALGYGSRGAG 95 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig132494.2325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig132494.2325.1 >prot_H-elongata_contig132494.2325.1 ID=prot_H-elongata_contig132494.2325.1|Name=mRNA_H-elongata_contig132494.2325.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp MLPRRARLRQKHEPQEAAAVPSRHAKGDRGHGQGGGGHARGRQPRDLYTGback to top mRNA from alignment at H-elongata_contig132494:78..1150+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig132494.2325.1 ID=mRNA_H-elongata_contig132494.2325.1|Name=mRNA_H-elongata_contig132494.2325.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1073bp|location=Sequence derived from alignment at H-elongata_contig132494:78..1150+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig132494:78..1150+ >mRNA_H-elongata_contig132494.2325.1 ID=mRNA_H-elongata_contig132494.2325.1|Name=mRNA_H-elongata_contig132494.2325.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig132494:78..1150+ (Himanthalia elongata Himel1 dioecious)back to top |