|
|
Homology
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A6H5JDM9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM9_9PHAE) HSP 1 Score: 278 bits (710), Expect = 3.160e-76 Identity = 148/264 (56.06%), Postives = 177/264 (67.05%), Query Frame = 3
Query: 372 EAGKGELANANWGLRDFPAMVLPANAVVGPKQKSGTLPSQLGSLRPEFKSDCLFLLTLQT-SADEPADDDK------DKGETDGR-TYEARVDQMRGELVGVNCNFSANIKVQFK----NPLKGNTWSYPAMILLFCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPAPLE*RGG 1127
EAG+ A A R+FPAMV+P AV Q+SG LPSQ SLR E+ CLFLLTLQT D+ ++D +KG + + D MRGE+VGVNC+FSA I+VQ + SY + + CVL MC+ CCR+G +LA+R YG+NF VP+RFQPPKFDY RPIP ELV+Q+ ETAGGQ SEE RD+E GN LEC ICYA+VD L DYMLTPCDHVFHQGCL RWMD+K CPTCR+ELP LE R G
Sbjct: 517 EAGEAAAALA----REFPAMVVPKVAVAAESQESGPLPSQWYSLRKEYGQGCLFLLTLQTVEEDKGWNEDSFIGAVGEKGGDEASIARKPLADLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAVSYSVLFTMVCVLQMCLFCCRVGLMLAQRRYGRNFMVPQRFQPPKFDYRRPIPPELVEQARTETAGGQPSEESRDLEAGNCLECTICYAAVDAELGDYMLTPCDHVFHQGCLTRWMDIKTTCPTCRQELPPALERRDG 776
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: D8LPM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM4_ECTSI) HSP 1 Score: 190 bits (482), Expect = 1.720e-46 Identity = 102/195 (52.31%), Postives = 129/195 (66.15%), Query Frame = 3
Query: 414 RDFPAMVLPANAVVGPKQKSGTLPSQLGSLRPEFKSDCLFLLTLQT-SADEPADDD-------KDKGETDGRTYEARVDQMRGELVGVNCNFSANIKVQFK----NPLKGNTWSYPAMILLFCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLE 962
R+FPAMV+P AV Q+SG LPSQ +LR E+ CLFLLTLQT D+ DDD ++ G+ + D MRGE+VGVNC+FSA I+VQ + +Y + + C+L MC+LCCR+G +LA+R YG+NF VP+RFQPPKFDYHRPIP ELV+Q+ ETAGGQ SEE RD+E GN LE
Sbjct: 528 REFPAMVVPKVAVATDGQESGPLPSQWYNLRKEYGQGCLFLLTLQTVEEDKGWDDDGIIGAVGEEGGDEAANARKPLADLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAVNYSVVFTMVCLLQMCLLCCRVGLMLAQRRYGRNFMVPQRFQPPKFDYHRPIPPELVEQAQTETAGGQPSEESRDLEAGNCLE 722
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A835Z9L2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L2_9STRA) HSP 1 Score: 115 bits (287), Expect = 2.280e-24 Identity = 53/120 (44.17%), Postives = 79/120 (65.83%), Query Frame = 3
Query: 744 CVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELP 1103
CVL + + ++ IL + +G +FF+P RF P K++Y+RP+PS +++ ++ E D+ETG ECAICY VD +L+ +M+TPCDH FH CL +W+++KMECPTCR LP
Sbjct: 181 CVLLVLWVSVQVCVILMQDRFGPHFFIPARFLPQKYNYYRPVPSGPQYEAA-------ETSETADLETGTGPECAICYNVVDPSLRTHMVTPCDHCFHTECLQQWINIKMECPTCRSTLP 293
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A7S2HH52_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HH52_9STRA) HSP 1 Score: 115 bits (288), Expect = 2.670e-24 Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 3
Query: 774 RIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELP 1103
++G + ++ G F +P +F P K++Y RP+P L Q+S++T +E G+ LEC ICY+++D A +DYM+TPCDH+FH CL RWM+ KMECP CR LP
Sbjct: 218 QVGILYLQQRIGPRFMIPAQFLPAKYNYMRPLPPALA-QTSQDT-----------VENGSSLECVICYSTIDQATRDYMITPCDHIFHPTCLERWMEQKMECPVCRHVLP 315
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A5J4XT81_9CHLO (Putative RING finger-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XT81_9CHLO) HSP 1 Score: 111 bits (278), Expect = 1.530e-21 Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 3
Query: 741 FCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPI-PSELVDQSSRETAGGQDSEEG-RDIETGNL-LECAICYASVDDAL-QDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPAP 1109
FC++ + L + +L + +G +FVP+RF P K+DYHRP+ P E+ + G DS G D+ETG+ +EC IC D + M+TPC+H FH CL RWMDVKMECPTCRR LP P
Sbjct: 482 FCMVLVAWLSLQAAVLLCQTVWGPRWFVPKRFLPAKYDYHRPVVPREVAE-------GALDSSSGPADVETGDAGVECVICMNPADVGQPRTRMVTPCNHFFHNHCLQRWMDVKMECPTCRRSLPTP 601
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A7S1E5W2_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E5W2_9STRA) HSP 1 Score: 101 bits (251), Expect = 5.240e-21 Identity = 56/147 (38.10%), Postives = 69/147 (46.94%), Query Frame = 3
Query: 786 ILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRE-----------TAGGQDSEEGRDIETGN----------------------------LLECAICYASVDDALQ-DYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPA 1106
++A+ YG F +P RF PPKFDYHR IP L+ + E TA +E TG L+C IC +D Q YML PC+H+FH+ CL +WMDVKMECPTCR ELPA
Sbjct: 15 LIAQSKYGARFMIPARFLPPKFDYHRAIPPSLLPPEAEEQDMKSEQVKPSTAPTLQNESPEHTTTGTRNRLKKKNGSQEHVTTTMTTEAVEVPTPALDCVICCNGIDHHNQKSYMLAPCEHIFHKDCLIQWMDVKMECPTCRTELPA 161
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: UPI0006450D8C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450D8C) HSP 1 Score: 109 bits (272), Expect = 7.960e-21 Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 3
Query: 741 FCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPAP 1109
+C + + C ++ + + YG FFVP+RF PPK+ Y RPI + + ++ EEG+ C IC +++ +YM+TPCDH+FH+ CL RWMD KMECPTCRR +PAP
Sbjct: 490 YCAIMVIWTCIQVLTLWLQDKYGPQFFVPKRFLPPKYQYTRPISNSI-----------RNREEGQG--------CVICINDIEENDSEYMITPCDHLFHERCLLRWMDFKMECPTCRRPIPAP 593
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A7S1VXN9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXN9_9STRA) HSP 1 Score: 107 bits (268), Expect = 5.380e-20 Identity = 67/169 (39.64%), Postives = 85/169 (50.30%), Query Frame = 3
Query: 729 MILLFCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSEL-----VDQSS--------------------------RETAGGQDSEEGRD--IETGN---------LLECAICYASVDDA-LQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPA 1106
M++L+ L CVL + + YG F +P RF PPKFDY RPIP L VD+SS R + G DS G +ET N L+C ICY S+D + + YML PCDH+FH+ CL +WM+VKMECP CR+ELPA
Sbjct: 749 MLILWVGLQACVL-------VMQGKYGTRFMIPARFLPPKFDYSRPIPPSLLPSPTVDESSGGMLDSDVVPVSTTGVTRNRIKGNRSRTGSHGHDSSNGTTTILETTNDCTGGENAATLDCVICYNSIDTSNRRGYMLAPCDHIFHRECLEQWMEVKMECPICRKELPA 910
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A7S4RC09_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RC09_9STRA) HSP 1 Score: 107 bits (268), Expect = 6.580e-20 Identity = 67/169 (39.64%), Postives = 85/169 (50.30%), Query Frame = 3
Query: 729 MILLFCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSEL-----VDQSS--------------------------RETAGGQDSEEGRD--IETGN---------LLECAICYASVDDA-LQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPA 1106
M++L+ L CVL + + YG F +P RF PPKFDY RPIP L VD+SS R + G DS G +ET N L+C ICY S+D + + YML PCDH+FH+ CL +WM+VKMECP CR+ELPA
Sbjct: 997 MLILWVGLQACVL-------VMQGKYGTRFMIPARFLPPKFDYSRPIPPSLLPSPTVDESSGGMLDSDVVPVSTTGVTRNRIKGNRSRTGSHGHDSSNGTTTILETTNDCTGGENAATLDCVICYNSIDTSNRRGYMLAPCDHIFHRECLEQWMEVKMECPICRKELPA 1158
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: I0YZY3_COCSC (RING-type domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZY3_COCSC) HSP 1 Score: 100 bits (248), Expect = 2.770e-19 Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 3
Query: 723 PAMILLFCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNL-LECAICYASVD-DALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELP 1103
P + L C+ + ++ ++ + +G F+P+RF P K+DYHR P+ ++ + + A G RDIETG+ +EC IC +D + M+TPC+H FH CL RWMDVKMECPTCR+ LP
Sbjct: 171 PGVCLALCIC----MAVQVAVLMVQTRWGPRCFIPKRFLPAKYDYHRRAPARPLE--APDQARGP-----RDIETGDAGVECVICMNPLDVERTSARMVTPCNHFFHPDCLNRWMDVKMECPTCRQLLP 288
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 110.5 |
| Seed ortholog evalue | 1.1e-21 |
| Seed eggNOG ortholog | 159749.K0TNA2 |
| KEGG ko | ko:K06030 |
| KEGG TC | 9.B.25.1,9.B.25.2 |
| KEGG Pathway | ko04137,ko04214,ko04621,map04137,map04214,map04621 |
| GOs | GO:0000003,GO:0000139,GO:0000151,GO:0000209,GO:0000322,GO:0000323,GO:0000324,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005794,GO:0005975,GO:0005976,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006984,GO:0006991,GO:0007154,GO:0007165,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009664,GO:0009791,GO:0009827,GO:0009845,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010154,GO:0010191,GO:0010393,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0016567,GO:0016740,GO:0017144,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0022414,GO:0023052,GO:0030163,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032933,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034067,GO:0034613,GO:0035103,GO:0036211,GO:0042175,GO:0042545,GO:0043161,GO:0043162,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044695,GO:0045229,GO:0045488,GO:0045893,GO:0045935,GO:0045944,GO:0046872,GO:0046914,GO:0048316,GO:0048363,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051252,GO:0051254,GO:0051603,GO:0051604,GO:0051641,GO:0051716,GO:0060255,GO:0061458,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0070727,GO:0071501,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0080001,GO:0080090,GO:0080134,GO:0080135,GO:0090351,GO:0098588,GO:0098791,GO:0098796,GO:0098827,GO:0140096,GO:1900037,GO:1900039,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141 |
| EggNOG free text desc. | zinc-RING finger domain |
| EggNOG OGs | 2XC12@2836,COG5540@1,KOG0828@2759 |
| COG Functional cat. | O |
| Best tax level | Bacillariophyta |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03029,ko04131 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-06_004840.1 |
| Exons | 7 |
| Model size | 3321 |
| Cds size | 765 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929785.5613668-UTR-H-elongata_contig13229:930..1102 | 1622929785.5613668-UTR-H-elongata_contig13229:930..1102 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13229 931..1102 + |
| 1691679156.7941775-UTR-H-elongata_contig13229:930..1102 | 1691679156.7941775-UTR-H-elongata_contig13229:930..1102 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13229 931..1102 + |
| 1622929785.5738564-UTR-H-elongata_contig13229:1702..1883 | 1622929785.5738564-UTR-H-elongata_contig13229:1702..1883 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13229 1703..1883 + |
| 1691679156.8032625-UTR-H-elongata_contig13229:1702..1883 | 1691679156.8032625-UTR-H-elongata_contig13229:1702..1883 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13229 1703..1883 + |
| 1622929785.6972759-UTR-H-elongata_contig13229:5488..7691 | 1622929785.6972759-UTR-H-elongata_contig13229:5488..7691 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13229 5489..7691 + |
| 1691679156.854144-UTR-H-elongata_contig13229:5488..7691 | 1691679156.854144-UTR-H-elongata_contig13229:5488..7691 | Himanthalia elongata Himel1 dioecious | UTR | H-elongata_contig13229 5489..7691 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929785.603404-CDS-H-elongata_contig13229:1883..2078 | 1622929785.603404-CDS-H-elongata_contig13229:1883..2078 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 1884..2078 + |
| 1691679156.8103225-CDS-H-elongata_contig13229:1883..2078 | 1691679156.8103225-CDS-H-elongata_contig13229:1883..2078 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 1884..2078 + |
| 1622929785.6180303-CDS-H-elongata_contig13229:2495..2633 | 1622929785.6180303-CDS-H-elongata_contig13229:2495..2633 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 2496..2633 + |
| 1691679156.8175378-CDS-H-elongata_contig13229:2495..2633 | 1691679156.8175378-CDS-H-elongata_contig13229:2495..2633 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 2496..2633 + |
| 1622929785.6308362-CDS-H-elongata_contig13229:3229..3319 | 1622929785.6308362-CDS-H-elongata_contig13229:3229..3319 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 3230..3319 + |
| 1691679156.8248155-CDS-H-elongata_contig13229:3229..3319 | 1691679156.8248155-CDS-H-elongata_contig13229:3229..3319 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 3230..3319 + |
| 1622929785.6458032-CDS-H-elongata_contig13229:4335..4449 | 1622929785.6458032-CDS-H-elongata_contig13229:4335..4449 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 4336..4449 + |
| 1691679156.8319573-CDS-H-elongata_contig13229:4335..4449 | 1691679156.8319573-CDS-H-elongata_contig13229:4335..4449 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 4336..4449 + |
| 1622929785.662861-CDS-H-elongata_contig13229:4910..4982 | 1622929785.662861-CDS-H-elongata_contig13229:4910..4982 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 4911..4982 + |
| 1691679156.8396375-CDS-H-elongata_contig13229:4910..4982 | 1691679156.8396375-CDS-H-elongata_contig13229:4910..4982 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 4911..4982 + |
| 1622929785.6817226-CDS-H-elongata_contig13229:5332..5488 | 1622929785.6817226-CDS-H-elongata_contig13229:5332..5488 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 5333..5488 + |
| 1691679156.8469656-CDS-H-elongata_contig13229:5332..5488 | 1691679156.8469656-CDS-H-elongata_contig13229:5332..5488 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig13229 5333..5488 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig13229.2317.1 >prot_H-elongata_contig13229.2317.1 ID=prot_H-elongata_contig13229.2317.1|Name=mRNA_H-elongata_contig13229.2317.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
MIEAGAEAGKGELANANWGLRDFPAMVLPANAVVGPKQKSGTLPSQLGSL
RPEFKSDCLFLLTLQTSADEPADDDKDKGETDGRTYEARVDQMRGELVGV
NCNFSANIKVQFKNPLKGNTWSYPAMILLFCVLHMCVLCCRIGFILARRS
YGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGN
LLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELP
APLE* back to topmRNA from alignment at H-elongata_contig13229:931..7691+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig13229.2317.1 ID=mRNA_H-elongata_contig13229.2317.1|Name=mRNA_H-elongata_contig13229.2317.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6761bp|location=Sequence derived from alignment at H-elongata_contig13229:931..7691+ (Himanthalia elongata Himel1 dioecious)
GACGGGCGCAATATGAAGCTGCAAGCGGGGTCAAGTGGGAGTCAAGAGAG
GATCGGTTGACAGGAGGCGCGGGGGAAAGGTTACGGGGTTGGGGTCAAGA
ACGAGAATTACTCCAGGGGGTGGTGGGGGGCCCACTGGACAACGTTTTGG
GGCGAAGGGAACGCACTCGAAAGTGAGCCGAAGCGACCCTGGTCTGCGCT
CTGCTTTACCAAGGCATCGCGGACGCTTTGGCTTTGAAATAGCATTCAGC
TGTGGAAATATTGGGGTGCCTTTTCCTCCATAGGCTATATATGGTAAATA
CTATTAATACCTTATTGCGAGGCATGTTCAGCAGCACCTCCGTGAACCAC
TAACAACGATATGTGTGTCGAGAGAGGGGCATAGAGTCGTGCGGACTTGA
CGCTGAGTTCATTGCAGCGTGTAAGTATTGCCAGATTTTGTGGGGCAAAT
GGGAGCGCTCTCATGGAAACGGATGAGCGTCACAAGGCAAGAGTTGAATC
TACGCCTCACCTCTCCGATGGGCAATTTTCTTTCGTCTGACTTCGGCTAT
CTAATAATAAACCCAAAAAATATGTGCTTGAAAGGCTATAGCTCGATTTC
TAGTGACCGTTTTCTCGCTCGCATAGATTTAACACGCTTTCCTTCCCGCG
AATCATAGTAAGGATGACGAAACCCCTTTCCTGCCATATACGGCCTCAGT
CAAACCCCATGTCCACCCTCGTCACAAACATGCCTAGCTCGGACTGCTGT
TTTGCCTACACGCTTTGAGCAGAGGTCGGGCACAGCTATCGCAGGGGTGG
GAGAGAGCGACTAACGAGGACGAAACGCGAAGCAGCGGCGGTGGCGGCAG
GTGGCGGCGGCATCTCAAGGGTATCGCAACTACTCCATCGCCAACGATAG
CATCAAATTTGCCCAACGCCGTAGATGTCGCCGTGGCACATGCTCCGGAT
GATATGATAGAGGCTGGTGCAGAGGCGGGAAAGGGGGAGCTGGCCAATGC
AAATTGGGGTCTACGGGATTTTCCGGCGATGGTGCTTCCCGCGAATGCGG
TGGTGGGCCCAAAGCAAAAGTCTGGGACATTGCCTTCCCAGTTGGGCTCT
CTCCGCCCAGAATTCAAATCTGACTGCTTATTTCTGCTGACGCTGCAGGT
ACGTTGAGGCGTGGTGTGTTGTGGTGGTTGGTTGCGATAGTTGAAAAACA
ACTTTGATAGACAATAGCCAAGGGTCGATGAAGGTTAGCGTTGAGTCGAT
CGATAGATCGATGACAGGGTGAGCTTCACAAATTCAGCCATCCCAGAGCT
GATGTGTTCGAAACTCGGTAGTATGGTTTGCGCCTCAGGTTTGGCGCACG
ACCTGATGCTGTACAGTCTCGTATAGAGACCACGGCGCAAGGTTCGAAGT
CTCCTTGACGATTCGCTGGGCGTGCCGTTAGCCCCTATGTGGTAAAGGCG
GCGCTAAAAAGATATAGGAAGCCGTGGTGACGATATGCCAGGGCGGTCGC
TCGCAATCTGTTTCAAAGACTGCTGTTTACCGCTCCCAAAAATCGTGCGG
TGTGCCGTGAGATAGACGTCCGCCGACGAACCCGCTGATGACGATAAGGA
CAAAGGAGAGACGGACGGCCGAACCTACGAGGCAAGGGTGGACCAAATGA
GGGGAGAGCTGGTCGGAGTGAACTGCAACTTTTCAGCAAATATTAAAGTT
CAGGTGATGCTTTCGGCGACAATCCACGGTGCACCGTGCTGTAAACGTTT
TAGCAATAGGCCCGCTCCCCACGGCTGCGTTAGTGAGGACTTTTTTCACC
ACTCTTTGGAAAGGCAGGCATTTATGTCCGCACGCTTCGGGTCAGGCGTT
TCCATGTTCTGGATGGGACAACGTTGTGGCACCGTCCAAGAGCCGGCGGC
TCGCGTGTTCCTGAACATACGGGGAAAAATCGTCGATCGACATATCCGAT
TATGTCTCCTACGCTCAAAGGGATGTGTGCCCTTGGAAATGGTAGCGCAT
AGTAGTCCCTGGGGGGCTTTCCAAACACAGTGTTTAGCCAGCATAATCAT
TAGCTAATAATGCTTAAGTCTAAGGGGTGTTTCTAGCGCCAGCGCTGGCC
TCAACTCAGTCGAAACATGAAGCGATCTCCTTCGCGGTTGTTTACTCTCC
CTTGGTACCTTCCTCCCCCCTTGTCATCATTACCCCCCCGTCCGTCCGTC
CGTCCTTGGTACCTTTTCTCTGCCGATGGAATGTTTCTCTCTCTTTGCCT
CTCCGTCTCTCATTATGTGCGTGTCCTCATGTCTGAGTTTTCTTGACAGT
TCAAGAACCCACTTAAAGGAAACACGTGGAGCTATCCGGCCATGATCCTC
TTGTTCTGCGTTCTGCATATGTGTGTGCTGTGCTGTCGGGTGAGATACCC
CACACCCATCTAAGACAACTACATTCCAGCCGTACAATCCTATGTATAAT
TATGACAAATCGTGCAATGACGAAGGTGTACTCGTAGCCCGTAAGCTGTT
ACATGGGTTTTCGTTGGTTCCGACGCGTGCTCGCGGCCCAAACATAAGAA
CATATCAGTCTACAGTTATGCGTTGCGCATCTTAGCAGGGGGCGTCACCG
CTGTTGACATTCCGAGTGTTTCTTAGTCCTTTTCCCCCCGATTATTGTTG
TCGCATGCACCCCTAATGACGTTAAAATTGCCGCAATTTTACTGCACAAG
GGTTCCTATAAAGCCTTGGGCTGTTAGTGACAGCGATTCGTCGCCCTCGT
TGTTGAGCAATTTATTTTACAGCTAACCCGTAGTAGACATGTTGGCTAGC
TTGCTTGTGACTCTGCTTTCCCTTTGTGGGAAAACAAAGTGGAGCCCTTC
ACACAGCGCGACCTTTGATTTGAGTGTGCATGTACCTTGTCTTGACCTCG
AATGTTCAATGAAAGAACGCCACCCGGCACAGCGTTGTTATCGTTTCGGG
GGCTATTTGATTTCGGATACGATCTTGACTGACCCAACACCTATTGTCTC
CCCAGACCCGAAGCTTGTTAAGCAAGAGCTATGTTTTGGCGATGGGGCCG
CCATAGGTCTAATGCCAAACTTCCGATGTGTGGTAATTCATGCCGCGTGT
ATTATGTTCGTTTCACCTTTGTTTTGTATCGCTACTGTTGTGACTCGACT
ATTATACTGTTTTGACACTGAATGATGTTATGCCAGAAGCACAAAAAAAT
GACCAGCTTTATCCACTTTAGTGCTGTGACAAAATATATGGTTGATGTTA
GCACGGATACGATGATGCGGCGGCGATGCCCAAGGACATTTAATCGCTTT
GCCTTCCAGTAGCTGGACGAGGACAAGTGTGTTTGCCCTACCGTTCTACC
CGTGAGCAAATTCGGTTCACGGCACAATCGTCGGCCCTACTATTTTCCCC
GCCAGATTGGCTTCATCCTAGCGCGAAGGAGTTACGGGCAGAACTTTTTC
GTCCCTCGCCGATTTCAGCCGCCCAAGTTCGACTACCACCGACCCATCCC
GTCCGAGTTGGTCGATCAGGTAAACGGGAAAGTTATGTATTAGTATCATT
GTTCTCTTCGCATTTGAGTATCCCAAAGGGGTCGAGGTTAGAGTCTTCTG
GCTCAGTGTCTCTCTTTCTCGTTGTTCTTATCTGGCCATCGCCGGTCCAG
CGCCTTGAGGCTGGGAACCATTGTTCTCGTGCAGGGGATGATTTCTCCCG
GTTTGCGGTGCTGTCATGTCTTACGAGCCACGGCTGGTAAGAGCGCTTAG
GACTGACTCAAAAACACCCGGAACTGACACAGCCTCCCCTTGTCGCGCGA
CCACTCAGTTCGTGCTCTCCGCTTAAAAAAAAATCGGATACCTGTCAGGT
GTTGCCCCCCTCTAGACTTGTGGCCTAGCCGTGATAATACGCGATAATGC
TGCGCTGGGCTCCCGCCAGCTAAGGGTAACTATCGTAATTGACCCTCGGC
GTGTACTTGCGTATGTCTCCACTTTTTTAGTCCAGCAGGGAAACGGCTGG
AGGGCAAGACAGCGAGGAAGGGCGAGACATCGAGACAGGCAACCTTTTGG
AGGTAAGCTGAAACCTTCGCGAGGCATGCGCTGTCACCGTCCTATGGCAG
ATATATATATATATATATATATATAGTTTAGTGGTTCGGCGTAACGTTTT
CCCGGTTTGAAGCGCTGTCTCTTTGCTTCCTCCACCCCATATTGATATAA
AGCAAGCCAAGCCAAGGCCAAGGTTTTTTGTGTCGAATCTCGAAAGCAAC
AATTAGCGACAAAAGTAAGCTGCAGACACCTGGTATACCAATACTATTAT
ACTCTGGAAAAACGGTTATTATACACCCCATTGCAAGACGAGCACAACCG
ATAAGACTTTCCTCGCCCTTCCCTCCCGGCGCCCGTCTCTTTTTCCTTCC
AGTGTGCAATTTGCTACGCGTCGGTAGATGACGCCTTGCAGGATTACATG
TTGACGCCATGCGATCATGTTTTTCATCAGGGCTGCCTCGCGCGGTGGAT
GGATGTTAAGATGGAGTGCCCAACATGTAGGCGTGAATTGCCCGCACCTC
TAGAATGACGGGGGGGTGCTTTTGTAGCAAGTATCGTGATTGTCTTCCGC
CGAAATGTTTCATGGTAGTAGTCGTCTGGTTTCGATCGTCGAGTTATCTT
GCACTCGACGGAGGCTATTTTCTTTTCGGGAGATTTGCTTTTGAAAGCGA
CTGCAATTTTTCTCGAAGCGGGCCCTCTTTAAAGAGTCGACAGCATATCG
GAACCTTAGAAACAGCTAAACCCCTCGAAATATTTGCGCGGGCTGTTGAA
ATGCAGAGTTGATAAGTACCGCGAGAGAGAATGTAGAAAACTTTTTTTTT
TATGACTAAACGTCGAGGAAGCGTCACCGCTCTCGCACATTATTCTCTTG
CCTTTTTTTCCCACCCATGGCCTTACCTACATAACTTGATTTTTGTGCGG
GTTCGGGTTGCACAGCGCATGGATCCGTTCCCTATCTTTGTTGTATTTAC
GCCAAGGGTTCAGAGCCTCCCTCTTGCGCTCCGTTCGAAGCGAGCGAAAC
GTTGTCCTCCTTCCAAGTGCCTTCCGGTACTATTGACAACTGCGCGCGTC
TGCATAGGTTACGTGCATACCTATATATTAGAGTACCGGATAGGACACCG
CTTGAACGCGCCTTGTTGGAGCGGCACCTTGTATAGAGCTTCCCTGTGCC
GCCATGCTTTTGGGGGGTGTTCCTGACCGCGTGCGCTGGCGCCGGCGCTT
TGGGCCCTGAAAGCGATAAGAACTAGCCTGGTGTTGGTGGAATTCAGCCA
TTTTCGTTGCGCTAGCAGACGAGTAAAATGTGATGGCGGGCTACAGCCCA
AGCTTTTCGCTATATATTTTGTTCCTACGAGCTTATTCTAGGGTAAGTGC
AACTCGTGTGTTTATGCAGCCACAAGTGCGTTTGGTGCATGTATATGTAT
GTACGTTACTTCCAACAAAGGAAACATCATGGAAGGTTCTGAAATTTGTA
TAAGTACTTCTATAATATTACGAACTGAAATCGTCCGTCCTAGATATTCC
TTCACGAGGATATGCAAAAGGGAGAAGGGTCGTTCCATTGTAGTGGTGGT
TGTCGTAGAAGCTGGGCGTGTTAGAGTTGATGAGGCATTCTAAGATATAG
CGTAGGATGTTTCCTTTCTTTAAATTGATTACGTATAAGTAGATACCAAA
GTCTCTCCACCATAGGACCTCCCAAGATATTTGACGCATTTCACTGTTAC
ATTTTGTTTCCTGTTGGACACGGCGTTTTTTCAAAGATGCCATTCTTCCA
ACATTGCAAGTATCGATTTAATGTTGAAGTTGACTTCGCATTGGCCCCTC
ACGGACATCGTGTCGCTTTTGCCTGTGGCCAAAACAACCAGATAAAAGGG
ATAATCCAGGGCTGTCAGCGGGTTGTTCTATGCGATTTTCAGCGCATTTT
ACTCGGATTGGTAGCGTCTGGAGGCGAGAGGTCAATCAAGGTCGATGTCG
GAATAACCCGGCTTGGCATGTACGGAATGGAATACCACCCAGGGGCACCC
ATGATTTTATCTTTGTAATTTTCCAGGCCATCATCACCGAGCCAGTTCCG
AAGGGGGCGTTACGACGCCGTATCATGTAACGCCTCGTCGATGCCACTCC
ATCTTATCATGTCTCTAAACATGCTGAAGCCCCGGGGCGTGGAAACAAGG
TAACACGCTGTGCACACGAAAACCGTGGTGCTGCCGAGAGAAAGCCTCCA
ATTCGTTTTATTCGTATCTTGTCGATGTTTCTCCTCCTACCATGTCACGT
TTTGAGGCAGTATTCGTACGGAAGATTTAATCAGCTCTAAAATTTTATTT
CCAGATGAACCCAGACCCGTGCCGACCTAAAGATAAGGAGACGATAGAAG
AGGCTTTCACTCTTTTTTATTTTAGAAACCTTGAACTCATTCAAACTCTC
CGAACACCCACACCTTCTTAGCGCCGAGAGAGGTGCAATCCAAGGGACCA
ACTATCGCCAGGTTGGAATGTGTAAATTGTTGGAGTTTGCTGGTTGAGTT
ATCGTTAGATGCGGGGAGGTTAGGAAAGAGTACGCCGTTATGCATTTATA
GTAGGTGATCTGGTTGTATAATTCTATCTATATATGCACGGCCCTCTGTA
TCACTTGTGTCTAAGTTGTTCTGGTGTTGTTCTATCGTACGTCTCTGTGT
AAGAGTTGGTGTGAGAGTGTGTGAGGCATGGCAGGTCCGGATCGGACCGC
CCCGACACGAG back to topCoding sequence (CDS) from alignment at H-elongata_contig13229:931..7691+ >mRNA_H-elongata_contig13229.2317.1 ID=mRNA_H-elongata_contig13229.2317.1|Name=mRNA_H-elongata_contig13229.2317.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1530bp|location=Sequence derived from alignment at H-elongata_contig13229:931..7691+ (Himanthalia elongata Himel1 dioecious)
ATGATAGAGGCTGGTGCAGAGGCGGGAAAGGGGGAGCTGGCCAATGCAAA
TTGGGGTCTACGGGATTTTCCGGCGATGGTGCTTCCCGCGAATGCGGTGG
TGGGCCCAAAGCAAAAGTCTGGGACATTGCCTTCCCAGTTGGGCTCTCTC
CGCCCAGAATTCAAATCTGACTGCTTATTTCTGCTGACGCTGCAGATGAT
AGAGGCTGGTGCAGAGGCGGGAAAGGGGGAGCTGGCCAATGCAAATTGGG
GTCTACGGGATTTTCCGGCGATGGTGCTTCCCGCGAATGCGGTGGTGGGC
CCAAAGCAAAAGTCTGGGACATTGCCTTCCCAGTTGGGCTCTCTCCGCCC
AGAATTCAAATCTGACTGCTTATTTCTGCTGACGCTGCAGACGTCCGCCG
ACGAACCCGCTGATGACGATAAGGACAAAGGAGAGACGGACGGCCGAACC
TACGAGGCAAGGGTGGACCAAATGAGGGGAGAGCTGGTCGGAGTGAACTG
CAACTTTTCAGCAAATATTAAAGTTCAGACGTCCGCCGACGAACCCGCTG
ATGACGATAAGGACAAAGGAGAGACGGACGGCCGAACCTACGAGGCAAGG
GTGGACCAAATGAGGGGAGAGCTGGTCGGAGTGAACTGCAACTTTTCAGC
AAATATTAAAGTTCAGTTCAAGAACCCACTTAAAGGAAACACGTGGAGCT
ATCCGGCCATGATCCTCTTGTTCTGCGTTCTGCATATGTGTGTGCTGTGC
TGTCGGTTCAAGAACCCACTTAAAGGAAACACGTGGAGCTATCCGGCCAT
GATCCTCTTGTTCTGCGTTCTGCATATGTGTGTGCTGTGCTGTCGGATTG
GCTTCATCCTAGCGCGAAGGAGTTACGGGCAGAACTTTTTCGTCCCTCGC
CGATTTCAGCCGCCCAAGTTCGACTACCACCGACCCATCCCGTCCGAGTT
GGTCGATCAGATTGGCTTCATCCTAGCGCGAAGGAGTTACGGGCAGAACT
TTTTCGTCCCTCGCCGATTTCAGCCGCCCAAGTTCGACTACCACCGACCC
ATCCCGTCCGAGTTGGTCGATCAGTCCAGCAGGGAAACGGCTGGAGGGCA
AGACAGCGAGGAAGGGCGAGACATCGAGACAGGCAACCTTTTGGAGTCCA
GCAGGGAAACGGCTGGAGGGCAAGACAGCGAGGAAGGGCGAGACATCGAG
ACAGGCAACCTTTTGGAGTGTGCAATTTGCTACGCGTCGGTAGATGACGC
CTTGCAGGATTACATGTTGACGCCATGCGATCATGTTTTTCATCAGGGCT
GCCTCGCGCGGTGGATGGATGTTAAGATGGAGTGCCCAACATGTAGGCGT
GAATTGCCCGCACCTCTAGAATGATGTGCAATTTGCTACGCGTCGGTAGA
TGACGCCTTGCAGGATTACATGTTGACGCCATGCGATCATGTTTTTCATC
AGGGCTGCCTCGCGCGGTGGATGGATGTTAAGATGGAGTGCCCAACATGT
AGGCGTGAATTGCCCGCACCTCTAGAATGA back to top
|