prot_H-elongata_contig13229.2317.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig13229.2317.1
Unique Nameprot_H-elongata_contig13229.2317.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length255
Homology
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A6H5JDM9_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDM9_9PHAE)

HSP 1 Score: 275 bits (703), Expect = 6.970e-84
Identity = 141/246 (57.32%), Postives = 169/246 (68.70%), Query Frame = 0
Query:   21 RDFPAMVLPANAVVGPKQKSGTLPSQLGSLRPEFKSDCLFLLTLQT-SADEPADDDK------DKGETDGR-TYEARVDQMRGELVGVNCNFSANIKVQFK----NPLKGNTWSYPAMILLFCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPAPLE 254
            R+FPAMV+P  AV    Q+SG LPSQ  SLR E+   CLFLLTLQT   D+  ++D       +KG  +     +   D MRGE+VGVNC+FSA I+VQ         +    SY  +  + CVL MC+ CCR+G +LA+R YG+NF VP+RFQPPKFDY RPIP ELV+Q+  ETAGGQ SEE RD+E GN LEC ICYA+VD  L DYMLTPCDHVFHQGCL RWMD+K  CPTCR+ELP  LE
Sbjct:  527 REFPAMVVPKVAVAAESQESGPLPSQWYSLRKEYGQGCLFLLTLQTVEEDKGWNEDSFIGAVGEKGGDEASIARKPLADLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAVSYSVLFTMVCVLQMCLFCCRVGLMLAQRRYGRNFMVPQRFQPPKFDYRRPIPPELVEQARTETAGGQPSEESRDLEAGNCLECTICYAAVDAELGDYMLTPCDHVFHQGCLTRWMDIKTTCPTCRQELPPALE 772          
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: D8LPM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM4_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 3.310e-52
Identity = 102/195 (52.31%), Postives = 129/195 (66.15%), Query Frame = 0
Query:   21 RDFPAMVLPANAVVGPKQKSGTLPSQLGSLRPEFKSDCLFLLTLQT-SADEPADDD-------KDKGETDGRTYEARVDQMRGELVGVNCNFSANIKVQFK----NPLKGNTWSYPAMILLFCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLE 203
            R+FPAMV+P  AV    Q+SG LPSQ  +LR E+   CLFLLTLQT   D+  DDD       ++ G+      +   D MRGE+VGVNC+FSA I+VQ         +    +Y  +  + C+L MC+LCCR+G +LA+R YG+NF VP+RFQPPKFDYHRPIP ELV+Q+  ETAGGQ SEE RD+E GN LE
Sbjct:  528 REFPAMVVPKVAVATDGQESGPLPSQWYNLRKEYGQGCLFLLTLQTVEEDKGWDDDGIIGAVGEEGGDEAANARKPLADLMRGEMVGVNCDFSAVIEVQLSPSTLRTAQSQAVNYSVVFTMVCLLQMCLLCCRVGLMLAQRRYGRNFMVPQRFQPPKFDYHRPIPPELVEQAQTETAGGQPSEESRDLEAGNCLE 722          
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A835Z9L2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9L2_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.680e-27
Identity = 53/120 (44.17%), Postives = 79/120 (65.83%), Query Frame = 0
Query:  131 CVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELP 250
            CVL +  +  ++  IL +  +G +FF+P RF P K++Y+RP+PS    +++       ++ E  D+ETG   ECAICY  VD +L+ +M+TPCDH FH  CL +W+++KMECPTCR  LP
Sbjct:  181 CVLLVLWVSVQVCVILMQDRFGPHFFIPARFLPQKYNYYRPVPSGPQYEAA-------ETSETADLETGTGPECAICYNVVDPSLRTHMVTPCDHCFHTECLQQWINIKMECPTCRSTLP 293          
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A7S2HH52_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HH52_9STRA)

HSP 1 Score: 115 bits (288), Expect = 6.230e-27
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 0
Query:  141 RIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELP 250
            ++G +  ++  G  F +P +F P K++Y RP+P  L  Q+S++T           +E G+ LEC ICY+++D A +DYM+TPCDH+FH  CL RWM+ KMECP CR  LP
Sbjct:  218 QVGILYLQQRIGPRFMIPAQFLPAKYNYMRPLPPALA-QTSQDT-----------VENGSSLECVICYSTIDQATRDYMITPCDHIFHPTCLERWMEQKMECPVCRHVLP 315          
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A5J4XT81_9CHLO (Putative RING finger-like n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XT81_9CHLO)

HSP 1 Score: 111 bits (278), Expect = 2.450e-24
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 0
Query:  130 FCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPI-PSELVDQSSRETAGGQDSEEG-RDIETGNL-LECAICYASVDDAL-QDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPAP 252
            FC++ +  L  +   +L +  +G  +FVP+RF P K+DYHRP+ P E+ +       G  DS  G  D+ETG+  +EC IC    D    +  M+TPC+H FH  CL RWMDVKMECPTCRR LP P
Sbjct:  482 FCMVLVAWLSLQAAVLLCQTVWGPRWFVPKRFLPAKYDYHRPVVPREVAE-------GALDSSSGPADVETGDAGVECVICMNPADVGQPRTRMVTPCNHFFHNHCLQRWMDVKMECPTCRRSLPTP 601          
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: UPI0006450D8C (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450D8C)

HSP 1 Score: 109 bits (272), Expect = 1.540e-23
Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 0
Query:  130 FCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPAP 252
            +C + +   C ++  +  +  YG  FFVP+RF PPK+ Y RPI + +           ++ EEG+         C IC   +++   +YM+TPCDH+FH+ CL RWMD KMECPTCRR +PAP
Sbjct:  490 YCAIMVIWTCIQVLTLWLQDKYGPQFFVPKRFLPPKYQYTRPISNSI-----------RNREEGQG--------CVICINDIEENDSEYMITPCDHLFHERCLLRWMDFKMECPTCRRPIPAP 593          
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A7S1E5W2_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E5W2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 4.890e-23
Identity = 56/147 (38.10%), Postives = 69/147 (46.94%), Query Frame = 0
Query:  145 ILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRE-----------TAGGQDSEEGRDIETGN----------------------------LLECAICYASVDDALQ-DYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPA 251
            ++A+  YG  F +P RF PPKFDYHR IP  L+   + E           TA    +E      TG                              L+C IC   +D   Q  YML PC+H+FH+ CL +WMDVKMECPTCR ELPA
Sbjct:   15 LIAQSKYGARFMIPARFLPPKFDYHRAIPPSLLPPEAEEQDMKSEQVKPSTAPTLQNESPEHTTTGTRNRLKKKNGSQEHVTTTMTTEAVEVPTPALDCVICCNGIDHHNQKSYMLAPCEHIFHKDCLIQWMDVKMECPTCRTELPA 161          
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A8J9WR16_9CHLO (Transmembrane E3 ubiquitin-protein ligase FLY1 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR16_9CHLO)

HSP 1 Score: 103 bits (258), Expect = 1.170e-21
Identity = 50/114 (43.86%), Postives = 70/114 (61.40%), Query Frame = 0
Query:  141 RIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNL-LECAICYASVD-DALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPAP 252
            ++  +L +  +G   F+P+RF P K+DYHR  P+       R     ++++  RDIETG+  +EC IC   +D +     M+TPC+H FH  CL RWMDVKMECPTCR+ LP P
Sbjct:  496 QVAVLLVQTRWGPRCFIPKRFLPAKYDYHRRAPA-------RPPQAPEEAQGPRDIETGDAGVECVICMNPLDVERTSARMVTPCNHFFHPDCLNRWMDVKMECPTCRQLLPPP 602          
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: A0A662YGN9_9STRA (RING-type domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGN9_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.820e-21
Identity = 50/123 (40.65%), Postives = 69/123 (56.10%), Query Frame = 0
Query:  130 FCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNLLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELPAP 252
            FC      +  ++G +  ++ YG  FFVP RF P K++Y R I    + Q +   +GG  S      +  N ++C IC   +D   +DYM+ PCDH+FH+ CL  WM VKMECPTCR  LP P
Sbjct:  640 FCYALTAWMLLQVGVLALQQRYGPRFFVPARFLPVKYNYERRI---NLQQMALLHSGGSAS-----CDEDNSVDCVICMVEIDVDARDYMIAPCDHIFHRECLQGWMQVKMECPTCRCVLPEP 754          
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Match: I0YZY3_COCSC (RING-type domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YZY3_COCSC)

HSP 1 Score: 100 bits (248), Expect = 2.260e-21
Identity = 52/129 (40.31%), Postives = 76/129 (58.91%), Query Frame = 0
Query:  124 PAMILLFCVLHMCVLCCRIGFILARRSYGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGNL-LECAICYASVD-DALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELP 250
            P + L  C+     +  ++  ++ +  +G   F+P+RF P K+DYHR  P+  ++  + + A G      RDIETG+  +EC IC   +D +     M+TPC+H FH  CL RWMDVKMECPTCR+ LP
Sbjct:  171 PGVCLALCIC----MAVQVAVLMVQTRWGPRCFIPKRFLPAKYDYHRRAPARPLE--APDQARGP-----RDIETGDAGVECVICMNPLDVERTSARMVTPCNHFFHPDCLNRWMDVKMECPTCRQLLP 288          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13229.2317.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JDM9_9PHAE6.970e-8457.32RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LPM4_ECTSI3.310e-5252.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z9L2_9STRA5.680e-2744.17RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2HH52_9STRA6.230e-2744.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A5J4XT81_9CHLO2.450e-2445.67Putative RING finger-like n=1 Tax=Trebouxia sp. A1... [more]
UPI0006450D8C1.540e-2340.65hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A7S1E5W2_9STRA4.890e-2338.10Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A8J9WR16_9CHLO1.170e-2143.86Transmembrane E3 ubiquitin-protein ligase FLY1 n=1... [more]
A0A662YGN9_9STRA1.820e-2140.65RING-type domain-containing protein (Fragment) n=2... [more]
I0YZY3_COCSC2.260e-2140.31RING-type domain-containing protein n=1 Tax=Coccom... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 203..246
e-value: 0.0016
score: 14.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 204..245
e-value: 3.4E-7
score: 39.9
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 203..246
e-value: 1.7E-11
score: 44.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 204..246
score: 13.02
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 178..252
e-value: 7.2E-16
score: 59.3
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 127..252
NoneNo IPR availablePANTHERPTHR22763:SF165TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE FLY1coord: 127..252
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 121..144
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..120
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 145..254
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 203..252
NoneNo IPR availableTMHMMTMhelixcoord: 123..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13229contigH-elongata_contig13229:1884..5488 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13229.2317.1mRNA_H-elongata_contig13229.2317.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig13229 931..7691 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig13229.2317.1 ID=prot_H-elongata_contig13229.2317.1|Name=mRNA_H-elongata_contig13229.2317.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=255bp
MIEAGAEAGKGELANANWGLRDFPAMVLPANAVVGPKQKSGTLPSQLGSL
RPEFKSDCLFLLTLQTSADEPADDDKDKGETDGRTYEARVDQMRGELVGV
NCNFSANIKVQFKNPLKGNTWSYPAMILLFCVLHMCVLCCRIGFILARRS
YGQNFFVPRRFQPPKFDYHRPIPSELVDQSSRETAGGQDSEEGRDIETGN
LLECAICYASVDDALQDYMLTPCDHVFHQGCLARWMDVKMECPTCRRELP
APLE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD