mRNA_H-elongata_contig131510.2275.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131510.2275.1
Unique NamemRNA_H-elongata_contig131510.2275.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: D8LGI4_ECTSI (Cupin_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI4_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.370e-21
Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGVVLEV 183
            ++Q MILNGQ+PHLTGFTRAVF+PGDEVE+H H +MDEVFY   G+G IEVDG V+++
Sbjct:   77 KKQTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVVQL 134          
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: UPI00041C5B5D (cupin domain-containing protein n=5 Tax=Planktothrix agardhii TaxID=1160 RepID=UPI00041C5B5D)

HSP 1 Score: 62.0 bits (149), Expect = 6.340e-11
Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGVVLEVK 186
            +++VM+  G LPHLT F++A FAPG     HSH  M EVF+ + G GNI ++G+  ++K
Sbjct:   21 KKKVMLSLGDLPHLTNFSQACFAPGQIASGHSHTDMSEVFFVESGLGNIRINGIDYQLK 79          
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: A0A0P7YQQ6_9CYAN (Cupin domain n=5 Tax=Oscillatoriales TaxID=1150 RepID=A0A0P7YQQ6_9CYAN)

HSP 1 Score: 61.6 bits (148), Expect = 9.400e-11
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 HPN-RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDG 168
            +PN R+QVM+ NG LPHLT F++A FAPG     H H  M EVF+ + G G I +DG
Sbjct:   17 NPNIRKQVMLRNGDLPHLTNFSQARFAPGQIAPGHCHDNMSEVFFVESGSGTITIDG 73          
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: A0A169ZLB0_9CYAN (Cupin n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A169ZLB0_9CYAN)

HSP 1 Score: 60.5 bits (145), Expect = 2.550e-10
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 HPN-RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVD 165
            +PN R+QVM+ +G LPHLT F +A FAPG     HSH+ M EVF+ + G G I +D
Sbjct:   17 NPNIRKQVMLKSGDLPHLTNFAQARFAPGQVAAAHSHSDMCEVFFVESGSGTIRID 72          
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: A0A1J5GXI9_9CYAN (Cupin n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A1J5GXI9_9CYAN)

HSP 1 Score: 60.1 bits (144), Expect = 3.610e-10
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGVVLEVK 186
            +++VM+  G LPHLT F++A FAPG     H+HA M EVF+ + G GNI +DG   ++K
Sbjct:   21 KKKVMLSLGDLPHLTNFSQAYFAPGQVAGGHAHADMCEVFFVESGLGNICIDGTDYDLK 79          
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: UPI0016839F32 (cupin domain-containing protein n=1 Tax=Tolypothrix sp. FACHB-123 TaxID=2692868 RepID=UPI0016839F32)

HSP 1 Score: 60.1 bits (144), Expect = 4.040e-10
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDG 168
            +++VM+  G LPHLT F++A FAPG     H+H  M EVF+ +VG G I VDG
Sbjct:   21 KKKVMLRLGDLPHLTNFSQARFAPGQSAPAHAHQDMSEVFFVEVGAGTIYVDG 73          
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: A0A6I5PJ41_9CYAN (Cupin domain-containing protein n=1 Tax=Leptolyngbya sp. SIO3F4 TaxID=2607780 RepID=A0A6I5PJ41_9CYAN)

HSP 1 Score: 59.3 bits (142), Expect = 7.070e-10
Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGV 171
            R++VM+ +G +PHLT F++A FAPG     H+H+ M EVF+   G G + V+G+
Sbjct:   21 RKKVMLQSGDIPHLTNFSQATFAPGQVANAHAHSDMYEVFFVSAGNGTMSVNGI 74          
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: UPI001D09F030 (cupin domain-containing protein n=1 Tax=Planktothrix agardhii TaxID=1160 RepID=UPI001D09F030)

HSP 1 Score: 58.2 bits (139), Expect = 1.200e-9
Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1
Query:   10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGV 171
            +++VM+  G LP+LT F++A FAPG     HSHA M EVF+ + G GNI ++G+
Sbjct:   21 KKKVMLSLGDLPNLTNFSQACFAPGQVAGGHSHADMSEVFFVESGLGNIRINGI 74          
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: UPI000B5A1F08 (cupin domain-containing protein n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI000B5A1F08)

HSP 1 Score: 58.2 bits (139), Expect = 2.050e-9
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVD 165
            +++VM+  G LPHLT F++A FAPG     H+HA M EVF+ + GRG IEV+
Sbjct:   21 QKKVMLRFGDLPHLTNFSQARFAPGQVAPAHAHADMCEVFFVESGRGEIEVN 72          
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: A0A1C0UUG5_9CYAN (Cupin n=4 Tax=Limnothrix TaxID=132605 RepID=A0A1C0UUG5_9CYAN)

HSP 1 Score: 58.2 bits (139), Expect = 2.190e-9
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   13 RQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDG 168
            +QV++  G LPHLT F+RA FAPG     H+H+ M EVF+ + G+G + VDG
Sbjct:   22 KQVLLRQGDLPHLTNFSRACFAPGQVSPGHAHSDMHEVFFIEAGQGTMIVDG 73          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGI4_ECTSI1.370e-2168.97Cupin_2 domain-containing protein n=2 Tax=Ectocarp... [more]
UPI00041C5B5D6.340e-1145.76cupin domain-containing protein n=5 Tax=Planktothr... [more]
A0A0P7YQQ6_9CYAN9.400e-1152.63Cupin domain n=5 Tax=Oscillatoriales TaxID=1150 Re... [more]
A0A169ZLB0_9CYAN2.550e-1051.79Cupin n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A16... [more]
A0A1J5GXI9_9CYAN3.610e-1047.46Cupin n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A... [more]
UPI0016839F324.040e-1050.94cupin domain-containing protein n=1 Tax=Tolypothri... [more]
A0A6I5PJ41_9CYAN7.070e-1044.44Cupin domain-containing protein n=1 Tax=Leptolyngb... [more]
UPI001D09F0301.200e-948.15cupin domain-containing protein n=1 Tax=Planktothr... [more]
UPI000B5A1F082.050e-951.92cupin domain-containing protein n=1 Tax=Leptolyngb... [more]
A0A1C0UUG5_9CYAN2.190e-950.00Cupin n=4 Tax=Limnothrix TaxID=132605 RepID=A0A1C0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131510contigH-elongata_contig131510:981..1166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size186
Cds size165
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.3714578-UTR-H-elongata_contig131510:980..10011622929781.3714578-UTR-H-elongata_contig131510:980..1001Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131510 981..1001 +
1691679155.18641-UTR-H-elongata_contig131510:980..10011691679155.18641-UTR-H-elongata_contig131510:980..1001Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig131510 981..1001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.3918843-CDS-H-elongata_contig131510:1001..11661622929781.3918843-CDS-H-elongata_contig131510:1001..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131510 1002..1166 +
1691679155.194797-CDS-H-elongata_contig131510:1001..11661691679155.194797-CDS-H-elongata_contig131510:1001..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131510 1002..1166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131510.2275.1prot_H-elongata_contig131510.2275.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131510 1002..1166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131510.2275.1

>prot_H-elongata_contig131510.2275.1 ID=prot_H-elongata_contig131510.2275.1|Name=mRNA_H-elongata_contig131510.2275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
MILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGV
VLEVK
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mRNA from alignment at H-elongata_contig131510:981..1166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131510.2275.1 ID=mRNA_H-elongata_contig131510.2275.1|Name=mRNA_H-elongata_contig131510.2275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig131510:981..1166+ (Himanthalia elongata Himel1 dioecious)
CACCCTAACCGACGTCAGGTGATGATCCTGAACGGCCAGTTACCGCATCT CACGGGGTTCACGAGAGCAGTCTTCGCCCCCGGAGACGAGGTAGAGATCC ACTCACACGCCACCATGGACGAGGTGTTCTATGGCGACGTCGGAAGGGGA AACATCGAGGTCGACGGGGTCGTACTAGAGGTAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig131510:981..1166+

>mRNA_H-elongata_contig131510.2275.1 ID=mRNA_H-elongata_contig131510.2275.1|Name=mRNA_H-elongata_contig131510.2275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig131510:981..1166+ (Himanthalia elongata Himel1 dioecious)
ATGATCCTGAACGGCCAGTTACCGCATCTCACGGGGTTCACGAGAGCAGT
CTTCGCCCCCGGAGACGAGGTAGAGATCCACTCACACGCCACCATGGACG
AGGTGTTCTATGGCGACGTCGGAAGGGGAAACATCGAGGTCGACGGGGTC
GTACTAGAGGTAAAGATGATCCTGAACGGCCAGTTACCGCATCTCACGGG
GTTCACGAGAGCAGTCTTCGCCCCCGGAGACGAGGTAGAGATCCACTCAC
ACGCCACCATGGACGAGGTGTTCTATGGCGACGTCGGAAGGGGAAACATC
GAGGTCGACGGGGTCGTACTAGAGGTAAAG
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