mRNA_H-elongata_contig131510.2275.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: D8LGI4_ECTSI (Cupin_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI4_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 1.370e-21 Identity = 40/58 (68.97%), Postives = 50/58 (86.21%), Query Frame = 1
Query: 10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGVVLEV 183
++Q MILNGQ+PHLTGFTRAVF+PGDEVE+H H +MDEVFY G+G IEVDG V+++
Sbjct: 77 KKQTMILNGQVPHLTGFTRAVFSPGDEVELHWHTSMDEVFYAAEGKGTIEVDGTVVQL 134
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: UPI00041C5B5D (cupin domain-containing protein n=5 Tax=Planktothrix agardhii TaxID=1160 RepID=UPI00041C5B5D) HSP 1 Score: 62.0 bits (149), Expect = 6.340e-11 Identity = 27/59 (45.76%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGVVLEVK 186
+++VM+ G LPHLT F++A FAPG HSH M EVF+ + G GNI ++G+ ++K
Sbjct: 21 KKKVMLSLGDLPHLTNFSQACFAPGQIASGHSHTDMSEVFFVESGLGNIRINGIDYQLK 79
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: A0A0P7YQQ6_9CYAN (Cupin domain n=5 Tax=Oscillatoriales TaxID=1150 RepID=A0A0P7YQQ6_9CYAN) HSP 1 Score: 61.6 bits (148), Expect = 9.400e-11 Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 HPN-RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDG 168
+PN R+QVM+ NG LPHLT F++A FAPG H H M EVF+ + G G I +DG
Sbjct: 17 NPNIRKQVMLRNGDLPHLTNFSQARFAPGQIAPGHCHDNMSEVFFVESGSGTITIDG 73
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: A0A169ZLB0_9CYAN (Cupin n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A169ZLB0_9CYAN) HSP 1 Score: 60.5 bits (145), Expect = 2.550e-10 Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 1 HPN-RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVD 165
+PN R+QVM+ +G LPHLT F +A FAPG HSH+ M EVF+ + G G I +D
Sbjct: 17 NPNIRKQVMLKSGDLPHLTNFAQARFAPGQVAAAHSHSDMCEVFFVESGSGTIRID 72
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: A0A1J5GXI9_9CYAN (Cupin n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A1J5GXI9_9CYAN) HSP 1 Score: 60.1 bits (144), Expect = 3.610e-10 Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGVVLEVK 186
+++VM+ G LPHLT F++A FAPG H+HA M EVF+ + G GNI +DG ++K
Sbjct: 21 KKKVMLSLGDLPHLTNFSQAYFAPGQVAGGHAHADMCEVFFVESGLGNICIDGTDYDLK 79
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: UPI0016839F32 (cupin domain-containing protein n=1 Tax=Tolypothrix sp. FACHB-123 TaxID=2692868 RepID=UPI0016839F32) HSP 1 Score: 60.1 bits (144), Expect = 4.040e-10 Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDG 168
+++VM+ G LPHLT F++A FAPG H+H M EVF+ +VG G I VDG
Sbjct: 21 KKKVMLRLGDLPHLTNFSQARFAPGQSAPAHAHQDMSEVFFVEVGAGTIYVDG 73
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: A0A6I5PJ41_9CYAN (Cupin domain-containing protein n=1 Tax=Leptolyngbya sp. SIO3F4 TaxID=2607780 RepID=A0A6I5PJ41_9CYAN) HSP 1 Score: 59.3 bits (142), Expect = 7.070e-10 Identity = 24/54 (44.44%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGV 171
R++VM+ +G +PHLT F++A FAPG H+H+ M EVF+ G G + V+G+
Sbjct: 21 RKKVMLQSGDIPHLTNFSQATFAPGQVANAHAHSDMYEVFFVSAGNGTMSVNGI 74
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: UPI001D09F030 (cupin domain-containing protein n=1 Tax=Planktothrix agardhii TaxID=1160 RepID=UPI001D09F030) HSP 1 Score: 58.2 bits (139), Expect = 1.200e-9 Identity = 26/54 (48.15%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGV 171
+++VM+ G LP+LT F++A FAPG HSHA M EVF+ + G GNI ++G+
Sbjct: 21 KKKVMLSLGDLPNLTNFSQACFAPGQVAGGHSHADMSEVFFVESGLGNIRINGI 74
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: UPI000B5A1F08 (cupin domain-containing protein n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI000B5A1F08) HSP 1 Score: 58.2 bits (139), Expect = 2.050e-9 Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 10 RRQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVD 165
+++VM+ G LPHLT F++A FAPG H+HA M EVF+ + GRG IEV+
Sbjct: 21 QKKVMLRFGDLPHLTNFSQARFAPGQVAPAHAHADMCEVFFVESGRGEIEVN 72
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Match: A0A1C0UUG5_9CYAN (Cupin n=4 Tax=Limnothrix TaxID=132605 RepID=A0A1C0UUG5_9CYAN) HSP 1 Score: 58.2 bits (139), Expect = 2.190e-9 Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 13 RQVMILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDG 168
+QV++ G LPHLT F+RA FAPG H+H+ M EVF+ + G+G + VDG
Sbjct: 22 KQVLLRQGDLPHLTNFSRACFAPGQVSPGHAHSDMHEVFFIEAGQGTMIVDG 73 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131510.2275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig131510.2275.1 >prot_H-elongata_contig131510.2275.1 ID=prot_H-elongata_contig131510.2275.1|Name=mRNA_H-elongata_contig131510.2275.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp MILNGQLPHLTGFTRAVFAPGDEVEIHSHATMDEVFYGDVGRGNIEVDGVback to top mRNA from alignment at H-elongata_contig131510:981..1166+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig131510.2275.1 ID=mRNA_H-elongata_contig131510.2275.1|Name=mRNA_H-elongata_contig131510.2275.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=186bp|location=Sequence derived from alignment at H-elongata_contig131510:981..1166+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig131510:981..1166+ >mRNA_H-elongata_contig131510.2275.1 ID=mRNA_H-elongata_contig131510.2275.1|Name=mRNA_H-elongata_contig131510.2275.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig131510:981..1166+ (Himanthalia elongata Himel1 dioecious)back to top |