mRNA_H-elongata_contig131493.2273.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig131493.2273.1
Unique NamemRNA_H-elongata_contig131493.2273.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: D7FT61_ECTSI (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT61_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 8.710e-24
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEATQ 165
            GRKVTWHTSQGNADLKSTF  NRHDLNVST QMCILLLFNS +TLSYA+IQEATQ
Sbjct:  534 GRKVTWHTSQGNADLKSTFGKNRHDLNVSTQQMCILLLFNSADTLSYADIQEATQ 588
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BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A8J5S2E5_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S2E5_ZIZPA)

HSP 1 Score: 84.7 bits (208), Expect = 7.810e-18
Identity = 34/54 (62.96%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 162
            GR++TW T+ GNAD+K+TF G RH+LNVSTYQMC+L+LFNST+ ++Y++I++AT
Sbjct:  532 GRRLTWQTNMGNADIKATFAGRRHELNVSTYQMCVLMLFNSTDGMTYSDIEQAT 585
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BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A804RCT8_MAIZE (CULLIN_2 domain-containing protein n=11 Tax=Poaceae TaxID=4479 RepID=A0A804RCT8_MAIZE)

HSP 1 Score: 82.8 bits (203), Expect = 3.710e-17
Identity = 35/55 (63.64%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 GRKVTWHTSQGNADLKSTF-EGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 162
            GR++TW T+ GNAD+K+TF  GN+H+LNVSTYQMC+L+LFNS+N L+Y EI+++T
Sbjct:  538 GRRLTWQTNMGNADIKATFGNGNKHELNVSTYQMCVLMLFNSSNVLTYREIEQST 592
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BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A1L7RRH9_KETDA (Cullin-3A (Fragment) n=16 Tax=Keteleeria TaxID=3323 RepID=A0A1L7RRH9_KETDA)

HSP 1 Score: 79.3 bits (194), Expect = 4.080e-17
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 GRKVTWHTSQGNADLKSTF-EGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 162
            GR++TW T+ G ADLK+TF +G +H+LNVSTYQMCIL+LFNS + LSY +I+EAT
Sbjct:   31 GRRLTWQTNMGTADLKATFGKGQKHELNVSTYQMCILILFNSVDRLSYKDIEEAT 85
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BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A4S4DPV9_CAMSI (CULLIN_2 domain-containing protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4DPV9_CAMSI)

HSP 1 Score: 82.4 bits (202), Expect = 5.070e-17
Identity = 37/56 (66.07%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 GRKVTWHTSQGNADLKSTF-EGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEATQ 165
            GR++TW T+ G+ADLK+TF +G +H+LNVSTYQMCIL+LFNST+ LSY EI++AT+
Sbjct:  533 GRRLTWQTNMGSADLKATFGKGQKHELNVSTYQMCILMLFNSTDRLSYKEIEQATE 588
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BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A7J7G2P8_CAMSI (CULLIN_2 domain-containing protein n=9 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7J7G2P8_CAMSI)

HSP 1 Score: 82.4 bits (202), Expect = 5.070e-17
Identity = 37/56 (66.07%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 GRKVTWHTSQGNADLKSTF-EGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEATQ 165
            GR++TW T+ G+ADLK+TF +G +H+LNVSTYQMCIL+LFNST+ LSY EI++AT+
Sbjct:  661 GRRLTWQTNMGSADLKATFGKGQKHELNVSTYQMCILMLFNSTDRLSYKEIEQATE 716
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BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A446LKB2_TRITD (CULLIN_2 domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446LKB2_TRITD)

HSP 1 Score: 82.0 bits (201), Expect = 6.910e-17
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 162
            GR++TW T+ GNAD+K+TF   +H+LNVSTYQMC+L+LFNST+TL+Y EI++ T
Sbjct:  443 GRRLTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNSTDTLTYKEIEQNT 496
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BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A3B6B8A4_WHEAT (CULLIN_2 domain-containing protein n=24 Tax=Pooideae TaxID=147368 RepID=A0A3B6B8A4_WHEAT)

HSP 1 Score: 82.0 bits (201), Expect = 6.920e-17
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 162
            GR++TW T+ GNAD+K+TF   +H+LNVSTYQMC+L+LFNST+TL+Y EI++ T
Sbjct:  533 GRRLTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNSTDTLTYKEIEQNT 586
[Close]
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A7S4J4U9_9EUKA (Hypothetical protein n=2 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J4U9_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 2.410e-16
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 162
            GRK+ W  + GNADLK+TF   +H++NVSTYQMCILLLFN+T+T+SY +I++AT
Sbjct:  426 GRKLQWQPNMGNADLKATFSSRKHEVNVSTYQMCILLLFNTTDTMSYEDIEKAT 479
[Close]
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A0E0KVV6_ORYPU (CULLIN_2 domain-containing protein n=12 Tax=Oryzinae TaxID=1648021 RepID=A0A0E0KVV6_ORYPU)

HSP 1 Score: 80.5 bits (197), Expect = 2.410e-16
Identity = 33/54 (61.11%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 162
            GR++TW T+ GNAD+K+ F G RH+LNVSTYQMC+L+LFNS + L+Y +I++AT
Sbjct:  532 GRRLTWQTNMGNADIKAMFGGRRHELNVSTYQMCVLMLFNSADGLTYGDIEQAT 585
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT61_ECTSI8.710e-2489.09CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A8J5S2E5_ZIZPA7.810e-1862.96Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A804RCT8_MAIZE3.710e-1763.64CULLIN_2 domain-containing protein n=11 Tax=Poacea... [more]
A0A1L7RRH9_KETDA4.080e-1765.45Cullin-3A (Fragment) n=16 Tax=Keteleeria TaxID=332... [more]
A0A4S4DPV9_CAMSI5.070e-1766.07CULLIN_2 domain-containing protein n=1 Tax=Camelli... [more]
A0A7J7G2P8_CAMSI5.070e-1766.07CULLIN_2 domain-containing protein n=9 Tax=Mesangi... [more]
A0A446LKB2_TRITD6.910e-1762.96CULLIN_2 domain-containing protein n=1 Tax=Triticu... [more]
A0A3B6B8A4_WHEAT6.920e-1762.96CULLIN_2 domain-containing protein n=24 Tax=Pooide... [more]
A0A7S4J4U9_9EUKA2.410e-1662.96Hypothetical protein n=2 Tax=Prymnesium polylepis ... [more]
A0A0E0KVV6_ORYPU2.410e-1661.11CULLIN_2 domain-containing protein n=12 Tax=Oryzin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131493contigH-elongata_contig131493:364..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.5e-19
Seed eggNOG ortholog2880.D7FT61
Preferred nameCUL3
KEGG koko:K03869
KEGG Pathwayko04120,ko04340,ko04341,map04120,map04340,map04341
KEGG ModuleM00384
GOsGO:0000003,GO:0000070,GO:0000082,GO:0000122,GO:0000151,GO:0000165,GO:0000209,GO:0000278,GO:0000280,GO:0000819,GO:0000902,GO:0000904,GO:0000922,GO:0001654,GO:0001701,GO:0001709,GO:0001745,GO:0001824,GO:0001825,GO:0001829,GO:0001831,GO:0001889,GO:0002009,GO:0002165,GO:0003006,GO:0003674,GO:0003824,GO:0004842,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005819,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005929,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006515,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006915,GO:0006919,GO:0006928,GO:0006950,GO:0006996,GO:0007010,GO:0007015,GO:0007049,GO:0007050,GO:0007059,GO:0007080,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007229,GO:0007267,GO:0007275,GO:0007276,GO:0007277,GO:0007278,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007346,GO:0007349,GO:0007369,GO:0007399,GO:0007409,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008150,GO:0008152,GO:0008219,GO:0008284,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009896,GO:0009909,GO:0009911,GO:0009966,GO:0009968,GO:0009987,GO:0009994,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010646,GO:0010648,GO:0010927,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0010965,GO:0012501,GO:0012505,GO:0015630,GO:0016043,GO:0016050,GO:0016055,GO:0016192,GO:0016310,GO:0016358,GO:0016477,GO:0016567,GO:0016740,GO:0017145,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019904,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022612,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030029,GO:0030030,GO:0030036,GO:0030038,GO:0030071,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030178,GO:0030182,GO:0030239,GO:0030332,GO:0030431,GO:0031032,GO:0031033,GO:0031034,GO:0031145,GO:0031175,GO:0031208,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031331,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031461,GO:0031463,GO:0031514,GO:0031625,GO:0031647,GO:0031648,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032436,GO:0032446,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034622,GO:0035023,GO:0035024,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0035556,GO:0035966,GO:0035967,GO:0036126,GO:0036211,GO:0040011,GO:0040016,GO:0042127,GO:0042221,GO:0042692,GO:0042749,GO:0042752,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043009,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043149,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043280,GO:0043281,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044346,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0045165,GO:0045187,GO:0045475,GO:0045732,GO:0045786,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045892,GO:0045931,GO:0045934,GO:0046578,GO:0046580,GO:0046907,GO:0046982,GO:0046983,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048511,GO:0048512,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048563,GO:0048569,GO:0048580,GO:0048582,GO:0048583,GO:0048585,GO:0048592,GO:0048598,GO:0048599,GO:0048609,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048732,GO:0048736,GO:0048737,GO:0048749,GO:0048812,GO:0048813,GO:0048831,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050000,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051017,GO:0051056,GO:0051058,GO:0051094,GO:0051128,GO:0051130,GO:0051146,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051336,GO:0051345,GO:0051603,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051788,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0055001,GO:0055002,GO:0060255,GO:0060429,GO:0060562,GO:0060828,GO:0061008,GO:0061024,GO:0061061,GO:0061564,GO:0061572,GO:0061630,GO:0061659,GO:0062033,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070647,GO:0070887,GO:0070925,GO:0071218,GO:0071310,GO:0071630,GO:0071688,GO:0071704,GO:0071840,GO:0072576,GO:0080090,GO:0090068,GO:0090090,GO:0090114,GO:0090596,GO:0097190,GO:0097193,GO:0097223,GO:0097435,GO:0097729,GO:0098813,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120036,GO:0120039,GO:0140014,GO:0140096,GO:0198738,GO:1901044,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903047,GO:1903052,GO:1903320,GO:1903322,GO:1903364,GO:1903506,GO:1903507,GO:1905114,GO:1905818,GO:1905820,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2000116,GO:2000241,GO:2000243,GO:2001056,GO:2001141,GO:2001252
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929781.2310624-CDS-H-elongata_contig131493:363..5281622929781.2310624-CDS-H-elongata_contig131493:363..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131493 364..528 +
1691679155.1568549-CDS-H-elongata_contig131493:363..5281691679155.1568549-CDS-H-elongata_contig131493:363..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig131493 364..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131493.2273.1prot_H-elongata_contig131493.2273.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig131493 364..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig131493.2273.1

>prot_H-elongata_contig131493.2273.1 ID=prot_H-elongata_contig131493.2273.1|Name=mRNA_H-elongata_contig131493.2273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEI
QEATQ
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mRNA from alignment at H-elongata_contig131493:364..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig131493.2273.1 ID=mRNA_H-elongata_contig131493.2273.1|Name=mRNA_H-elongata_contig131493.2273.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig131493:364..528+ (Himanthalia elongata Himel1 dioecious)
GGCCGAAAGGTTACCTGGCATACGTCTCAGGGGAACGCCGACTTAAAGTC
GACGTTCGAGGGGAACCGGCACGACCTGAACGTGTCGACGTACCAGATGT
GCATTCTGCTGCTCTTTAACAGCACGAACACCCTATCCTACGCCGAGATC
CAGGAGGCCACTCAG
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Coding sequence (CDS) from alignment at H-elongata_contig131493:364..528+

>mRNA_H-elongata_contig131493.2273.1 ID=mRNA_H-elongata_contig131493.2273.1|Name=mRNA_H-elongata_contig131493.2273.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig131493:364..528+ (Himanthalia elongata Himel1 dioecious)
GGCCGAAAGGTTACCTGGCATACGTCTCAGGGGAACGCCGACTTAAAGTC
GACGTTCGAGGGGAACCGGCACGACCTGAACGTGTCGACGTACCAGATGT
GCATTCTGCTGCTCTTTAACAGCACGAACACCCTATCCTACGCCGAGATC
CAGGAGGCCACTCAGGGCCGAAAGGTTACCTGGCATACGTCTCAGGGGAA
CGCCGACTTAAAGTCGACGTTCGAGGGGAACCGGCACGACCTGAACGTGT
CGACGTACCAGATGTGCATTCTGCTGCTCTTTAACAGCACGAACACCCTA
TCCTACGCCGAGATCCAGGAGGCCACTCAG
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