prot_H-elongata_contig131493.2273.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig131493.2273.1
Unique Nameprot_H-elongata_contig131493.2273.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length55
Homology
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: D7FT61_ECTSI (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT61_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 8.710e-24
Identity = 49/55 (89.09%), Postives = 51/55 (92.73%), Query Frame = 0
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEATQ 55
            GRKVTWHTSQGNADLKSTF  NRHDLNVST QMCILLLFNS +TLSYA+IQEATQ
Sbjct:  534 GRKVTWHTSQGNADLKSTFGKNRHDLNVSTQQMCILLLFNSADTLSYADIQEATQ 588          
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A8J5S2E5_ZIZPA (Uncharacterized protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S2E5_ZIZPA)

HSP 1 Score: 84.7 bits (208), Expect = 7.810e-18
Identity = 34/54 (62.96%), Postives = 49/54 (90.74%), Query Frame = 0
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 54
            GR++TW T+ GNAD+K+TF G RH+LNVSTYQMC+L+LFNST+ ++Y++I++AT
Sbjct:  532 GRRLTWQTNMGNADIKATFAGRRHELNVSTYQMCVLMLFNSTDGMTYSDIEQAT 585          
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A804RCT8_MAIZE (CULLIN_2 domain-containing protein n=11 Tax=Poaceae TaxID=4479 RepID=A0A804RCT8_MAIZE)

HSP 1 Score: 82.8 bits (203), Expect = 3.710e-17
Identity = 35/55 (63.64%), Postives = 49/55 (89.09%), Query Frame = 0
Query:    1 GRKVTWHTSQGNADLKSTF-EGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 54
            GR++TW T+ GNAD+K+TF  GN+H+LNVSTYQMC+L+LFNS+N L+Y EI+++T
Sbjct:  538 GRRLTWQTNMGNADIKATFGNGNKHELNVSTYQMCVLMLFNSSNVLTYREIEQST 592          
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A1L7RRH9_KETDA (Cullin-3A (Fragment) n=16 Tax=Keteleeria TaxID=3323 RepID=A0A1L7RRH9_KETDA)

HSP 1 Score: 79.3 bits (194), Expect = 4.080e-17
Identity = 36/55 (65.45%), Postives = 47/55 (85.45%), Query Frame = 0
Query:    1 GRKVTWHTSQGNADLKSTF-EGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 54
            GR++TW T+ G ADLK+TF +G +H+LNVSTYQMCIL+LFNS + LSY +I+EAT
Sbjct:   31 GRRLTWQTNMGTADLKATFGKGQKHELNVSTYQMCILILFNSVDRLSYKDIEEAT 85          
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A4S4DPV9_CAMSI (CULLIN_2 domain-containing protein n=1 Tax=Camellia sinensis var. sinensis TaxID=542762 RepID=A0A4S4DPV9_CAMSI)

HSP 1 Score: 82.4 bits (202), Expect = 5.070e-17
Identity = 37/56 (66.07%), Postives = 50/56 (89.29%), Query Frame = 0
Query:    1 GRKVTWHTSQGNADLKSTF-EGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEATQ 55
            GR++TW T+ G+ADLK+TF +G +H+LNVSTYQMCIL+LFNST+ LSY EI++AT+
Sbjct:  533 GRRLTWQTNMGSADLKATFGKGQKHELNVSTYQMCILMLFNSTDRLSYKEIEQATE 588          
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A7J7G2P8_CAMSI (CULLIN_2 domain-containing protein n=9 Tax=Mesangiospermae TaxID=1437183 RepID=A0A7J7G2P8_CAMSI)

HSP 1 Score: 82.4 bits (202), Expect = 5.070e-17
Identity = 37/56 (66.07%), Postives = 50/56 (89.29%), Query Frame = 0
Query:    1 GRKVTWHTSQGNADLKSTF-EGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEATQ 55
            GR++TW T+ G+ADLK+TF +G +H+LNVSTYQMCIL+LFNST+ LSY EI++AT+
Sbjct:  661 GRRLTWQTNMGSADLKATFGKGQKHELNVSTYQMCILMLFNSTDRLSYKEIEQATE 716          
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A446LKB2_TRITD (CULLIN_2 domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446LKB2_TRITD)

HSP 1 Score: 82.0 bits (201), Expect = 6.910e-17
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 54
            GR++TW T+ GNAD+K+TF   +H+LNVSTYQMC+L+LFNST+TL+Y EI++ T
Sbjct:  443 GRRLTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNSTDTLTYKEIEQNT 496          
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A3B6B8A4_WHEAT (CULLIN_2 domain-containing protein n=24 Tax=Pooideae TaxID=147368 RepID=A0A3B6B8A4_WHEAT)

HSP 1 Score: 82.0 bits (201), Expect = 6.920e-17
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 0
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 54
            GR++TW T+ GNAD+K+TF   +H+LNVSTYQMC+L+LFNST+TL+Y EI++ T
Sbjct:  533 GRRLTWQTNMGNADIKATFGDRKHELNVSTYQMCVLMLFNSTDTLTYKEIEQNT 586          
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A7S4J4U9_9EUKA (Hypothetical protein n=2 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4J4U9_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 2.410e-16
Identity = 34/54 (62.96%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 54
            GRK+ W  + GNADLK+TF   +H++NVSTYQMCILLLFN+T+T+SY +I++AT
Sbjct:  426 GRKLQWQPNMGNADLKATFSSRKHEVNVSTYQMCILLLFNTTDTMSYEDIEKAT 479          
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Match: A0A0E0KVV6_ORYPU (CULLIN_2 domain-containing protein n=12 Tax=Oryzinae TaxID=1648021 RepID=A0A0E0KVV6_ORYPU)

HSP 1 Score: 80.5 bits (197), Expect = 2.410e-16
Identity = 33/54 (61.11%), Postives = 46/54 (85.19%), Query Frame = 0
Query:    1 GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEIQEAT 54
            GR++TW T+ GNAD+K+ F G RH+LNVSTYQMC+L+LFNS + L+Y +I++AT
Sbjct:  532 GRRLTWQTNMGNADIKAMFGGRRHELNVSTYQMCVLMLFNSADGLTYGDIEQAT 585          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig131493.2273.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT61_ECTSI8.710e-2489.09CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A8J5S2E5_ZIZPA7.810e-1862.96Uncharacterized protein n=1 Tax=Zizania palustris ... [more]
A0A804RCT8_MAIZE3.710e-1763.64CULLIN_2 domain-containing protein n=11 Tax=Poacea... [more]
A0A1L7RRH9_KETDA4.080e-1765.45Cullin-3A (Fragment) n=16 Tax=Keteleeria TaxID=332... [more]
A0A4S4DPV9_CAMSI5.070e-1766.07CULLIN_2 domain-containing protein n=1 Tax=Camelli... [more]
A0A7J7G2P8_CAMSI5.070e-1766.07CULLIN_2 domain-containing protein n=9 Tax=Mesangi... [more]
A0A446LKB2_TRITD6.910e-1762.96CULLIN_2 domain-containing protein n=1 Tax=Triticu... [more]
A0A3B6B8A4_WHEAT6.920e-1762.96CULLIN_2 domain-containing protein n=24 Tax=Pooide... [more]
A0A7S4J4U9_9EUKA2.410e-1662.96Hypothetical protein n=2 Tax=Prymnesium polylepis ... [more]
A0A0E0KVV6_ORYPU2.410e-1661.11CULLIN_2 domain-containing protein n=12 Tax=Oryzin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.10.2620coord: 1..55
e-value: 2.4E-19
score: 71.5
NoneNo IPR availablePANTHERPTHR11932CULLINcoord: 1..54
NoneNo IPR availablePANTHERPTHR11932:SF74coord: 1..54
IPR001373Cullin, N-terminalPFAMPF00888Cullincoord: 1..55
e-value: 4.6E-18
score: 65.2
IPR016158Cullin homology domainPROSITEPS50069CULLIN_2coord: 1..55
score: 14.834
IPR036317Cullin homology domain superfamilySUPERFAMILY75632Cullin homology domaincoord: 1..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig131493contigH-elongata_contig131493:364..528 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig131493.2273.1mRNA_H-elongata_contig131493.2273.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig131493 364..528 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig131493.2273.1 ID=prot_H-elongata_contig131493.2273.1|Name=mRNA_H-elongata_contig131493.2273.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
GRKVTWHTSQGNADLKSTFEGNRHDLNVSTYQMCILLLFNSTNTLSYAEI
QEATQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001373Cullin_N
IPR016158Cullin_homology
IPR036317Cullin_homology_sf