mRNA_H-elongata_contig13107.2249.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig13107.2249.1
Unique NamemRNA_H-elongata_contig13107.2249.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Match: D8LC08_ECTSI (Bardet-Biedl syndrome protein 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC08_ECTSI)

HSP 1 Score: 402 bits (1032), Expect = 6.840e-133
Identity = 202/291 (69.42%), Postives = 239/291 (82.13%), Query Frame = 1
Query:    1 EVGDTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTDDGQAKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLINSQVHMDLLESNDPNEVGQQVMGSTTSLGPEDGGGVCTTYRFEGGATRLRVRARTTEGDYGDVRLTVVANTPPNKSAQVINFCMKPLSLHQRIHKIDRLLE-RPLNSLVFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASYKRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQVQ 870
            E GD  GR+VG +  EN  K+LKKE+ +LEKRVA E+KRL   G   DG   S AY P++QHFQAIT+CTLD EQGAY+ISVETPVPLDLVL+++ +HMD LES+D ++ GQ      TSL PE+GGGVC TYRFE GATRLR+RARTTEGDYGDVR+TVVA  PP KSAQVI+F MKPLSLH R+H + R L+ RP+N+LV RGNFT+QV HDWLAMCLP+VPPR+S E ED+TLNFENVFTGGILTASY+RG  ++ SDSASTLAIVKEL+SKEAT+RRV+ITD FQV+
Sbjct:  331 EAGDASGRTVGDVNDENRVKQLKKEVADLEKRVATEKKRLEAAGGGRDGNESSAAYTPATQHFQAITSCTLDPEQGAYVISVETPVPLDLVLLHAAIHMDFLESDDEDDRGQAT-SCVTSLSPENGGGVCATYRFESGATRLRLRARTTEGDYGDVRMTVVAKIPPKKSAQVIHFSMKPLSLHHRVHAMPRNLQARPMNALVLRGNFTMQVIHDWLAMCLPDVPPRISAEAEDATLNFENVFTGGILTASYRRGAAVVSSDSASTLAIVKELISKEATSRRVHITDTFQVE 620          
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Match: A0A835YQP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQP2_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.480e-49
Identity = 122/356 (34.27%), Postives = 173/356 (48.60%), Query Frame = 1
Query:    1 EVGDTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTD---DGQAKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLIN-------------SQVHMDLLESNDPNEVGQQVMGSTTSLGPEDGGGVC--------------------TTYRFEGGATRLR-------VRARTTEGDYGDVRLTVVANTP--------------PNKSAQVINFCMKPLSLHQRIHKIDRLLER-----------PLNSLVFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASYKRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQ 864
            + GD  GR+VG + TEN  ++L+KE+ EL+++VA ER++     +      G+    A  P  Q FQA+  C LDA+  AY ++VE PVP+D+VL+              S +H+D L+ +D +    Q     T   P  G                          Y  + G  RL        +R RTTEGD GDV LTVVA                   K+AQV+ F ++PLSLH R+H      E+           P+N L   G FT+ V HDW+A CLP VPP    +T +  L F N FTG +LT  Y++G  + RSDSAS LAI++E     A  RR++++ ++Q
Sbjct:  436 DAGDEGGRTVGVVQTENRVRQLQKEVQELQRKVAAEREKALSAAKLSAAKGGEGGGPALMPHVQPFQALATCALDADAAAYRMNVEIPVPIDVVLLQXXXXXXXXXXXXXSSIHLDFLDVSDES----QASAVCTVCAPAAGNAAALMAVYSXXXXXXXXXXXXXXAAYCRQEGTRRLMEXXXXLMIRVRTTEGDSGDVSLTVVARPEGGXXXXXXEAQGAISRKNAQVVKFKIRPLSLHHRVHAERGQEEKWPEPGEEAPGPPMNELRLTGGFTLGVVHDWVAQCLPGVPPEAQSDTMN--LKFRNAFTGSVLTCRYRKGEAVARSDSASALAILREAFETGAIQRRIHLSHNYQ 785          
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Match: A0A067CXS2_SAPPC (Uncharacterized protein (Fragment) n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CXS2_SAPPC)

HSP 1 Score: 182 bits (463), Expect = 4.830e-49
Identity = 105/293 (35.84%), Postives = 165/293 (56.31%), Query Frame = 1
Query:    1 EVGDTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTDDGQAKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLINSQVHMDLLESNDPNEVGQQVMGSTTSLGPEDGGGVCTTYRFEGGATRLRVRARTTEGDYGDVRLTVVANTPPNKSAQVINFCMKPLSLHQRIHKID--RLLERPLNSLVFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASYKRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQVQP 873
            +  D +GRS G +  E    +L+KEI +LE++VA ER R+     ++       A  P  +       C L+  +  Y +S+E PVP+  V+++S V +DLL++     V  Q +   +   P     V  TYR +    RL  R RT EG YG++ LTV+A+T P + AQ++   +KPLSLH RI+ ++   L E  +NSL   G+F++   H+W++ CLPEVP R+ D+  D  + F N F   +L   Y++G     S S ST+AI+KE+++KEATAR++ +   F ++P
Sbjct:  331 DADDVYGRSRGTVQRETRIVKLRKEIAQLEEKVAKERDRVARKSASE-----KEACLPVVEEVPVNCKCALNVAEQTYDLSIELPVPIATVVLHSSVPLDLLDT-----VNNQAILCRSPPDPSTNSHVLATYRCQEFTNRLEFRVRTLEGQYGEIELTVLADTVP-RCAQIVKQFIKPLSLHHRINVVESTELDEATMNSLHLTGDFSLLQVHEWVSYCLPEVPLRLQDD--DVKMYFRNTFFSNVLVCEYRKGEAQFASSSISTIAILKEVITKEATARKIGLDISFDIKP 610          
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Match: A0A7S1C5K1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5K1_9STRA)

HSP 1 Score: 181 bits (458), Expect = 2.350e-48
Identity = 107/288 (37.15%), Postives = 171/288 (59.38%), Query Frame = 1
Query:   10 DTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTDDGQAKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLINSQVHMDLLESNDPNEVGQQVMGSTTSLGPEDGGGVCTTYRFEGGATRLRVRARTTEGDYGDVRLTVVANTPPNKSAQVINFCMKPLSLHQRIH-KIDRLLERPLNSLVFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASYKRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQVQ 870
            D++GRS   +  E   + ++KE+ EL ++V  ER++             +  + P  Q F+     TLDA++ AY +++E P+P+D+V + SQV +DLL+  D N+     + S T    ++G  +  TYR +    RL +  RT EG +G+++  V+A   P K+AQ++   +KPLSLH R+H  ID    RP+N L   G FT+   H+W+A CLP+VP RV ++  +  + F NVF G  L+ASYK+G  +  SDS ST+AI+KE+++K ATAR+V +   F+++
Sbjct:  338 DSYGRSKNTVQREGRIRVMRKELDELRRKVEKEREKYAKV---------ADEFIPVEQQFKVKEAFTLDADEAAYKLNLEIPMPIDVVALQSQVPVDLLDV-DTND----AIVSRTPPDRDNGNALLATYRCQESMNRLTITLRTVEGQFGELQAMVIAKMAP-KTAQIVRLQIKPLSLHHRLHGDIDG---RPMNRLRLAGAFTLGQMHEWVANCLPDVPSRVMED--EVRMVFRNVFLGTQLSASYKKGEAVFLSDSISTIAILKEVITKAATARKVRVELSFEIK 605          
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Match: A0A1W0A0Q1_9STRA (BBS2_Mid domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0Q1_9STRA)

HSP 1 Score: 177 bits (448), Expect = 5.890e-47
Identity = 105/293 (35.84%), Postives = 163/293 (55.63%), Query Frame = 1
Query:    1 EVGDTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTDDGQAKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLINSQVHMDLLESNDPNEVGQQVMGSTTSLGPEDGGGVCTTYRFEGGATRLRVRARTTEGDYGDVRLTVVANTPPNKSAQVINFCMKPLSLHQRIHKIDRLLERP--LNSLVFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASYKRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQVQP 873
            +  D +GRS G +  E    +L+KEI++LE++V  ER R    G      A      P  +       CTL+  +  Y + VE PVP+  V+++S V +DLL++ +      Q +   +   P +   V  TYR +    RL  R RT EG YG++ L V+A+  P + AQV+   +KPLSLH RI+ +D     P  LN+L F G+F +   H+W+  CLP+VP R+ DE  D  + F N F G IL   Y++G  +  + S ST+AI+KE+++KEAT+R++ +  +F ++P
Sbjct:  328 DTDDVYGRSRGTVQRETRIVKLRKEIVQLEEKVNKERDRSAKKG------ASEKECLPVVEEIPVNCKCTLNPTEQTYDLFVEIPVPIASVVLHSSVPLDLLDTKN-----NQAILCRSPPDPVNNSHVLATYRCQDFTNRLEFRIRTLEGQYGEIELIVLADMVP-RCAQVVKQFIKPLSLHNRINVVDSTEIDPSVLNTLHFTGDFALIQVHEWVRYCLPDVPVRLQDE--DVKMYFRNTFFGNILVCEYRKGEALFSTSSISTIAILKEVITKEATSRKIGLDINFDIKP 606          
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Match: K3WA10_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WA10_GLOUD)

HSP 1 Score: 176 bits (447), Expect = 8.490e-47
Identity = 106/291 (36.43%), Postives = 165/291 (56.70%), Query Frame = 1
Query:    1 EVGDTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTDDGQAKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLINSQVHMDLLESNDPNEVGQQVMGSTTSLGPEDGGGVCTTYRFEGGATRLRVRARTTEGDYGDVRLTVVANTPPNKSAQVINFCMKPLSLHQRIHKIDR-LLERPLNSLVFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASYKRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQVQ 870
            +  D++GRS G +  E    +L+KEI  LE+++  E+ R          +++   Y P ++         L+   GAY +S+E PV +  V+++S V +DLLE    NE    ++ S +   P +      TYR      RL    RT EG YG+V +TV+ +T P K+AQ + F +KPLSLH R++++D   L+ P N+L F G FT+   HDW++MCLPEVP R+ DE  + T+ ++N F G +L   Y++G     S S S +AI+KE+++KEATAR+V +     V+
Sbjct:  336 DADDSYGRSRGTVHRETRIVKLRKEISLLEEKIIKEKDR--------SLRSREKEYLPVAEDLVVNHKFQLNPSLGAYDVSIEIPVSIQAVVLHSAVPIDLLE----NEKNHAIV-SKSPPDPANNTHFLATYRCLEQTHRLEFSIRTIEGQYGNVEVTVITDTQP-KAAQCVKFYVKPLSLHHRVNEVDESALKMPTNTLQFSGPFTLVQIHDWVSMCLPEVPGRLQDE--EVTMYYKNTFLGNLLLCRYRKGEATFSSPSVSVIAILKEMITKEATARKVTLNMSLDVK 610          
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Match: A0A485KX81_9STRA (Aste57867_12931 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KX81_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.030e-46
Identity = 107/292 (36.64%), Postives = 158/292 (54.11%), Query Frame = 1
Query:    1 EVGDTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTDDGQAKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLINSQVHMDLLESNDPNEVGQQVMGSTTSLGPEDGGGVCTTYRFEGGATRLRVRARTTEGDYGDVRLTVVANTPPNKSAQVINFCMKPLSLHQRIHKID--RLLERPLNSLVFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASYKRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQVQ 870
            +V DT+GRS G +  E    +L+KEI  LE++V  E+         D    K     P  +         L+ E   Y I+VE PVP+  V I+S V +DLL++        Q +   +   P +   V  TYR +    RL  R RT EG +GDV LTV+A T P KSAQ +   +KPLSLH R++ ++   L E  +NSL F G F++   H+W+  CLP+VP R+ D+  +  L F N F G +L   Y++G     S S ST+AI+KE+++KEAT R++ +  +F ++
Sbjct:  321 DVDDTYGRSRGTVQRETRIVKLRKEIAALEEKVLREK---------DKTNRKGDEVLPVVEEVPVNCQYALNPENQTYDIAVEIPVPIACVCIHSSVPLDLLDTTK-----NQAILCRSPADPANNTHVLATYRCQELTNRLEFRIRTLEGQFGDVELTVLAETVP-KSAQCVKVTVKPLSLHHRVNVVESSELDEDTMNSLHFTGAFSLIQVHEWICFCLPDVPVRMQDD--EGKLYFRNTFVGNLLVCEYRKGEARFFSSSVSTIAILKEVITKEATTRKITLNMNFDIK 595          
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Match: A0A024U9Y1_9STRA (BBS2_Mid domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9Y1_9STRA)

HSP 1 Score: 176 bits (445), Expect = 1.440e-46
Identity = 107/289 (37.02%), Postives = 156/289 (53.98%), Query Frame = 1
Query:   10 DTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTDDGQAKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLINSQVHMDLLESNDPNEVGQQVMGSTTSLGPEDGGGVCTTYRFEGGATRLRVRARTTEGDYGDVRLTVVANTPPNKSAQVINFCMKPLSLHQRIHKIDR--LLERPLNSLVFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASYKRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQVQ 870
            D++GRS G +  E    +L+KEI  LE++V  E+         D    K     P  +       C L+ E   Y I VE PVP+  V ++S V +DLL++        Q +   +   P +   V  TYR +    RL  R RT EG YG+V LTV+A T P KSAQ +   +KPLSLH R++ +D   + E  +NSL F G F++   H+W+A CLP+VP R+ D+  +  L F N F G +L   Y++G     S S ST+AI+KE+++KEAT R+V +   F ++
Sbjct:  325 DSYGRSRGTVQRETRIVKLRKEIAVLEEKVMKEK---------DRSTRKGDECLPVVEEVPVNCQCVLNPENQTYDIGVEIPVPIACVSLHSTVPLDLLDT-----AKNQAILCRSPADPANHTHVLATYRCQELTNRLEFRIRTLEGQYGEVELTVLAETVP-KSAQCVKIVVKPLSLHHRVNVVDSKDVDEAVMNSLYFTGAFSLVQVHEWVAFCLPDVPVRMQDD--EGKLYFRNAFVGNVLVCEYRKGEARFLSSSVSTIAILKEVITKEATIRKVTLNMTFDIK 596          
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Match: A0A421GMA2_9STRA (Cupin_8 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GMA2_9STRA)

HSP 1 Score: 176 bits (447), Expect = 2.860e-46
Identity = 104/291 (35.74%), Postives = 164/291 (56.36%), Query Frame = 1
Query:   10 DTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTDDGQAKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLINSQVHMDLLESNDPNEVGQQVMGSTTSLGPEDGGGVCTTYRFEGGATRLRVRARTTEGDYGDVRLTVVANTPPNKSAQVINFCMKPLSLHQRIHKIDRLLE----RPLNSLVFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASYKRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQVQ 870
            DT+GRS G +  E    +L+KE+  LE ++A    + G         AK   Y P ++     +   L+A  GAY +S+E PV + +++++S V +DLLE    NE    ++ S + + P +G     TYR      RL  + RT EG +G V  TVVANT P +SAQ + F +KPLSLH R++++    E    +P N+L   G+F++   HDW++MCLPEVP R+  ++++ TL + N F G +L   Y +G     + S S +AI+KE+++KEATAR+  +     ++
Sbjct:  648 DTYGRSRGTVQRETRIVKLRKEVTALEDKIARMSLQRG---------AKEKEYLPVAEDLVVNSKFQLNAALGAYDVSLEIPVSIQMIVLHSAVPLDLLE----NESNLAIV-SKSPVDPTNGTHFLATYRCLEPTHRLEFQVRTIEGQFGHVEATVVANTQP-RSAQTVKFFVKPLSLHHRVNELSEAEEAEFQKPCNTLQLSGDFSLVQIHDWVSMCLPEVPGRL--QSDEVTLRYRNTFVGSLLVCRYSKGEASFSTPSVSAIAILKEIITKEATARKATLNISLDIK 921          
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Match: W4FKY5_9STRA (BBS2_Mid domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FKY5_9STRA)

HSP 1 Score: 172 bits (435), Expect = 2.000e-45
Identity = 107/292 (36.64%), Postives = 159/292 (54.45%), Query Frame = 1
Query:    1 EVGDTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTDDGQAKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLINSQVHMDLLESNDPNEVGQQVMGSTTSLGPEDGGGVCTTYRFEGGATRLRVRARTTEGDYGDVRLTVVANTPPNKSAQVINFCMKPLSLHQRIHKIDR--LLERPLNSLVFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASYKRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQVQ 870
            ++ D++GRS G +  E    +L+KEI  LE++V  E+++            K     P  +       C L+ +   Y I+VE PVP+  V ++S V +DLL++     V  Q +       P     V  TYR +    RL  R RT EG YGDV LTV+A T P K+AQ +   +KPLSLH R++ +D   + E  +NSL F G F++   H+W++ CLP+VP R+ D+  +  L F N F G IL   YK+G     S S S +AI+KE+++KEATAR+V +   F ++
Sbjct:  322 DMEDSYGRSRGTVQRETRIVKLRKEIAILEEKVLKEKEK---------SSRKGDECLPVVEEVPVNCQCVLNPDNQTYDIAVEIPVPIACVSLHSSVPLDLLDT-----VKNQAI---LCRSPTTNSHVLATYRCQELTNRLEFRIRTLEGQYGDVELTVLAETVP-KAAQCVKVVVKPLSLHHRVNVVDSADVDESVMNSLHFTGAFSLIQVHEWVSFCLPDVPVRMQDD--EGKLFFRNTFVGNILVCEYKKGEARFLSSSVSAIAILKEVITKEATARKVTLNMTFDIK 593          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig13107.2249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC08_ECTSI6.840e-13369.42Bardet-Biedl syndrome protein 7 n=1 Tax=Ectocarpus... [more]
A0A835YQP2_9STRA2.480e-4934.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A067CXS2_SAPPC4.830e-4935.84Uncharacterized protein (Fragment) n=2 Tax=Saprole... [more]
A0A7S1C5K1_9STRA2.350e-4837.15Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A1W0A0Q1_9STRA5.890e-4735.84BBS2_Mid domain-containing protein n=1 Tax=Thraust... [more]
K3WA10_GLOUD8.490e-4736.43Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A485KX81_9STRA1.030e-4636.64Aste57867_12931 protein n=1 Tax=Aphanomyces stella... [more]
A0A024U9Y1_9STRA1.440e-4637.02BBS2_Mid domain-containing protein n=1 Tax=Aphanom... [more]
A0A421GMA2_9STRA2.860e-4635.74Cupin_8 domain-containing protein n=3 Tax=Phytopht... [more]
W4FKY5_9STRA2.000e-4536.64BBS2_Mid domain-containing protein n=11 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig13107contigH-elongata_contig13107:5456..7743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score404.8
Seed ortholog evalue3.3e-110
Seed eggNOG ortholog2880.D8LC08
Preferred nameBBS7
KEGG koko:K16749
GOsGO:0001085,GO:0001103,GO:0001654,GO:0001750,GO:0001947,GO:0002009,GO:0003007,GO:0003143,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006355,GO:0006357,GO:0006810,GO:0006928,GO:0006935,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0008104,GO:0008134,GO:0008150,GO:0009605,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010468,GO:0010556,GO:0010604,GO:0010970,GO:0015630,GO:0016020,GO:0016043,GO:0019219,GO:0019222,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030162,GO:0030705,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031503,GO:0032268,GO:0032270,GO:0032400,GO:0032401,GO:0032402,GO:0032434,GO:0032436,GO:0032501,GO:0032502,GO:0032838,GO:0032991,GO:0033036,GO:0033059,GO:0034464,GO:0034613,GO:0035050,GO:0035239,GO:0035295,GO:0036064,GO:0040011,GO:0042073,GO:0042176,GO:0042221,GO:0042330,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043473,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045444,GO:0045732,GO:0045862,GO:0046907,GO:0048513,GO:0048518,GO:0048522,GO:0048546,GO:0048562,GO:0048565,GO:0048568,GO:0048598,GO:0048729,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0051875,GO:0051877,GO:0051904,GO:0051905,GO:0055123,GO:0060021,GO:0060173,GO:0060255,GO:0060271,GO:0060322,GO:0060429,GO:0060562,GO:0061136,GO:0061371,GO:0065007,GO:0070491,GO:0070727,GO:0070925,GO:0071840,GO:0072359,GO:0072657,GO:0080090,GO:0097014,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903929,GO:1904106,GO:1904107,GO:1905515,GO:1990778,GO:2000058,GO:2000060,GO:2000112,GO:2001141
EggNOG free text desc.primary palate development
EggNOG OGs2C3IK@1,2QPS5@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBardet-Biedl syndrome protein 7
Ec32 orthologEc-20_004000.1
Exons6
Model size873
Cds size873
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig13107.2249.1prot_H-elongata_contig13107.2249.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig13107 5456..7743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929778.7708807-CDS-H-elongata_contig13107:5455..56541622929778.7708807-CDS-H-elongata_contig13107:5455..5654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 5456..5654 -
1691679154.2851777-CDS-H-elongata_contig13107:5455..56541691679154.2851777-CDS-H-elongata_contig13107:5455..5654Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 5456..5654 -
1622929778.7878275-CDS-H-elongata_contig13107:5965..61261622929778.7878275-CDS-H-elongata_contig13107:5965..6126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 5966..6126 -
1691679154.2945418-CDS-H-elongata_contig13107:5965..61261691679154.2945418-CDS-H-elongata_contig13107:5965..6126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 5966..6126 -
1622929778.8040128-CDS-H-elongata_contig13107:6393..65701622929778.8040128-CDS-H-elongata_contig13107:6393..6570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 6394..6570 -
1691679154.3018918-CDS-H-elongata_contig13107:6393..65701691679154.3018918-CDS-H-elongata_contig13107:6393..6570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 6394..6570 -
1622929778.8407626-CDS-H-elongata_contig13107:6740..68841622929778.8407626-CDS-H-elongata_contig13107:6740..6884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 6741..6884 -
1691679154.3091302-CDS-H-elongata_contig13107:6740..68841691679154.3091302-CDS-H-elongata_contig13107:6740..6884Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 6741..6884 -
1622929778.861738-CDS-H-elongata_contig13107:7360..74711622929778.861738-CDS-H-elongata_contig13107:7360..7471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 7361..7471 -
1691679154.316357-CDS-H-elongata_contig13107:7360..74711691679154.316357-CDS-H-elongata_contig13107:7360..7471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 7361..7471 -
1622929778.876549-CDS-H-elongata_contig13107:7662..77431622929778.876549-CDS-H-elongata_contig13107:7662..7743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 7663..7743 -
1691679154.3265214-CDS-H-elongata_contig13107:7662..77431691679154.3265214-CDS-H-elongata_contig13107:7662..7743Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig13107 7663..7743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig13107.2249.1

>prot_H-elongata_contig13107.2249.1 ID=prot_H-elongata_contig13107.2249.1|Name=mRNA_H-elongata_contig13107.2249.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=291bp
EVGDTFGRSVGAIITENHAKRLKKEILELEKRVAIERKRLGGTGRTDDGQ
AKSTAYAPSSQHFQAITNCTLDAEQGAYLISVETPVPLDLVLINSQVHMD
LLESNDPNEVGQQVMGSTTSLGPEDGGGVCTTYRFEGGATRLRVRARTTE
GDYGDVRLTVVANTPPNKSAQVINFCMKPLSLHQRIHKIDRLLERPLNSL
VFRGNFTIQVAHDWLAMCLPEVPPRVSDETEDSTLNFENVFTGGILTASY
KRGTVMLRSDSASTLAIVKELVSKEATARRVNITDDFQVQP
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mRNA from alignment at H-elongata_contig13107:5456..7743-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig13107.2249.1 ID=mRNA_H-elongata_contig13107.2249.1|Name=mRNA_H-elongata_contig13107.2249.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2288bp|location=Sequence derived from alignment at H-elongata_contig13107:5456..7743- (Himanthalia elongata Himel1 dioecious)
GAGGTTGGAGATACATTCGGGCGATCAGTGGGTGCTATCATCACCGAGAA TCACGCCAAAAGACTAAAAAAAGAAATATTGGTGAGGGCAGGATAGAGTT ATCAATGTTTAATTCGTTGAAGGGGGTTTCACCCTGTCGATTCCCTAGCC CCACGTCGAGAAATCAACGGTAAATGTATCCTACGGTGGCATAACACGTC CGCCCTCTACATTGTGTGCTCATACGATACATACACCCCTGTCTATTGTT GCGTTAAAACAAAACATCCTAGGAGCTGGAAAAGCGTGTGGCAATCGAGC GGAAACGGCTTGGGGGGACAGGAAGAACAGACGACGGACAAGCAAAATCC ACCGCCTATGCTCCCTCGAGTCAGCATTTCCAGGTCAGCAAGACACATGG AAGTATTTTCAAAGACAGCACTGGAGCGCTTCACATACTCCACCCTTCAT GGGAGTGGTGCCACGGTAACTCCCCACCCGAAGGTGTAACTTTCAGAGCT CGTTTGGGAAACAACTTTCGGGCTTCTCTGTCGTATTGAGCTTCCAACTT CGATTCGACCATCGCGATGAATAGCTCAGGATAACTGAAACGTCTACCAC GTTTTGGTTTTCAACGCACTAAATTTTATTTCGCTAGAGCGTTAAGCCTT CGTGGAATAAACGCTGGTTTGGGAGAGTAACTATCGTGGTCTCACTCAGG GCAAGCTTTCAATATAATCGACATTTAAGGACATGCCCCGATATCGAACG CGTGTGTTTTTTTAGAGAACCATATCGAGCGCGACCCCTCTATAAGACTC ACTTCTGTTCTCTAAACTAGGAGTATGGCGCTGATCATCCTTGTCACTTT CGTTGCTAGGCCATTACGAACTGTACTCTGGACGCGGAGCAAGGAGCATA TTTGATCAGTGTGGAAACCCCCGTTCCTCTGGATCTCGTACTTATCAACT CGCAAGTGCACATGGACCTACTGGAGTCGAACGACCCGAATGAAGTGGGA CAGGTAAGCCCAGAACTGTTGATATTGCTTCTGTAACAATGATATGGGGT AGCGGAGCACGGACGTAGAGTGGATGTATTCCAGCGGTTCGGCCTTGGTT TGAATTGAGGTGTCACGACAAGACGCATTGTAGTGCTTTGTTGAATATCG ACGTGCTCTACATCGGGAGAAAGCAGGTGATGGGGTCTACGACATCACTA GGCCCCGAAGACGGGGGGGGCGTGTGCACGACTTACCGTTTCGAGGGCGG CGCAACACGGCTCAGGGTACGGGCTCGTACAACTGAAGGGGACTACGGTG ATGTTCGTTTGACCGTTGTGGCCAACACACCTCCAAACAAATCCGCGCAG GTATGATGGTATACCGCTGCACTTTACTGCAACAAAGTTTTTATTTCCTT CCGGAAGTGTTTCGATAATAATCTAACGCTGCTTCCTGTTTCGACCGCCA TACATAGCAATGCTAGAAGTTCATAATTTTGGCTGGGCGATCAACAATCA GCTAACGACATCGTGCCATAAATTTATATTCTAGATTTGTGATGGTTCAG ATAAGTAAGAGCATGGGAAAAATGGGTTGATCGTTAATCGAATACCCCGG TACCGATTTTGACCCAGGTTATTAACTTTTGTATGAAGCCTCTCTCCCTA CATCAAAGAATACACAAGATTGATCGGTTATTGGAGCGGCCACTGAACTC GCTCGTCTTCCGAGGCAACTTCACCATCCAGGTCGCGCATGACTGGCTGG CGATGTGTCTCCCGGAGGTGCCCCCACGGTGAGTTGTCTCTAAGGCCATA CTTCCTTGATCATACTCTTGGACTGGCTTTCGTTTCGTCCCTTCTAAGTG TCCTTGAACCACGAAAGTGTTGAACAAACCTAACGCCGATGATATACATA TATTATCACTCCCGGGTCTATATCGGTGCTCTTTCCAAATTATAGAGCCT ATAGCGGGATTTTATTTTATGTGTCGCCCTAGAGAATAAGCATAATATTT AGCACCATCACATTGTTATACTTAGAACAACATTTAACATCACGTTCGAG AATCGTCCACATGGATCTATGCCTCTATATGTGCTTCAGAGTGTCGGACG AAACCGAAGATTCAACGCTCAACTTCGAAAACGTGTTCACCGGGGGGATT TTAACAGCATCATATAAACGAGGGACCGTAATGTTAAGATCAGACAGCGC GAGCACGTTAGCGATCGTAAAGGAGCTCGTAAGTAAAGAGGCCACAGCGC GGAGGGTTAACATAACCGATGATTTTCAGGTACAGCCA
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Coding sequence (CDS) from alignment at H-elongata_contig13107:5456..7743-

>mRNA_H-elongata_contig13107.2249.1 ID=mRNA_H-elongata_contig13107.2249.1|Name=mRNA_H-elongata_contig13107.2249.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1746bp|location=Sequence derived from alignment at H-elongata_contig13107:5456..7743- (Himanthalia elongata Himel1 dioecious)
GAGGTTGGAGATACATTCGGGCGATCAGTGGGTGCTATCATCACCGAGAA
TCACGCCAAAAGACTAAAAAAAGAAATATTGGAGGTTGGAGATACATTCG
GGCGATCAGTGGGTGCTATCATCACCGAGAATCACGCCAAAAGACTAAAA
AAAGAAATATTGGAGCTGGAAAAGCGTGTGGCAATCGAGCGGAAACGGCT
TGGGGGGACAGGAAGAACAGACGACGGACAAGCAAAATCCACCGCCTATG
CTCCCTCGAGTCAGCATTTCCAGGAGCTGGAAAAGCGTGTGGCAATCGAG
CGGAAACGGCTTGGGGGGACAGGAAGAACAGACGACGGACAAGCAAAATC
CACCGCCTATGCTCCCTCGAGTCAGCATTTCCAGGCCATTACGAACTGTA
CTCTGGACGCGGAGCAAGGAGCATATTTGATCAGTGTGGAAACCCCCGTT
CCTCTGGATCTCGTACTTATCAACTCGCAAGTGCACATGGACCTACTGGA
GTCGAACGACCCGAATGAAGTGGGACAGGCCATTACGAACTGTACTCTGG
ACGCGGAGCAAGGAGCATATTTGATCAGTGTGGAAACCCCCGTTCCTCTG
GATCTCGTACTTATCAACTCGCAAGTGCACATGGACCTACTGGAGTCGAA
CGACCCGAATGAAGTGGGACAGCAGGTGATGGGGTCTACGACATCACTAG
GCCCCGAAGACGGGGGGGGCGTGTGCACGACTTACCGTTTCGAGGGCGGC
GCAACACGGCTCAGGGTACGGGCTCGTACAACTGAAGGGGACTACGGTGA
TGTTCGTTTGACCGTTGTGGCCAACACACCTCCAAACAAATCCGCGCAGC
AGGTGATGGGGTCTACGACATCACTAGGCCCCGAAGACGGGGGGGGCGTG
TGCACGACTTACCGTTTCGAGGGCGGCGCAACACGGCTCAGGGTACGGGC
TCGTACAACTGAAGGGGACTACGGTGATGTTCGTTTGACCGTTGTGGCCA
ACACACCTCCAAACAAATCCGCGCAGGTTATTAACTTTTGTATGAAGCCT
CTCTCCCTACATCAAAGAATACACAAGATTGATCGGTTATTGGAGCGGCC
ACTGAACTCGCTCGTCTTCCGAGGCAACTTCACCATCCAGGTCGCGCATG
ACTGGCTGGCGATGTGTCTCCCGGAGGTGCCCCCACGGTTATTAACTTTT
GTATGAAGCCTCTCTCCCTACATCAAAGAATACACAAGATTGATCGGTTA
TTGGAGCGGCCACTGAACTCGCTCGTCTTCCGAGGCAACTTCACCATCCA
GGTCGCGCATGACTGGCTGGCGATGTGTCTCCCGGAGGTGCCCCCACGAG
TGTCGGACGAAACCGAAGATTCAACGCTCAACTTCGAAAACGTGTTCACC
GGGGGGATTTTAACAGCATCATATAAACGAGGGACCGTAATGTTAAGATC
AGACAGCGCGAGCACGTTAGCGATCGTAAAGGAGCTCGTAAGTAAAGAGG
CCACAGCGCGGAGGGTTAACATAACCGATGATTTTCAGGTACAGCCAAGT
GTCGGACGAAACCGAAGATTCAACGCTCAACTTCGAAAACGTGTTCACCG
GGGGGATTTTAACAGCATCATATAAACGAGGGACCGTAATGTTAAGATCA
GACAGCGCGAGCACGTTAGCGATCGTAAAGGAGCTCGTAAGTAAAGAGGC
CACAGCGCGGAGGGTTAACATAACCGATGATTTTCAGGTACAGCCA
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