mRNA_H-elongata_contig130890.2234.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A6H5KRZ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRZ7_9PHAE) HSP 1 Score: 183 bits (464), Expect = 5.630e-53 Identity = 92/109 (84.40%), Postives = 101/109 (92.66%), Query Frame = 1
Query: 1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKIIVDESKKRVFNRDI 327
VLLTTNVLSRGVDVPAVSLVVNYDMPT+G S++ DPDTYLHRIGRTGRFGRRGVAINLIQDD +RV+E+IDRHFSP SM+R ASTDVEELEKIIV+ESKKRV NRD+
Sbjct: 447 VLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSQDPDPDTYLHRIGRTGRFGRRGVAINLIQDDSTFRVMESIDRHFSPTGSMLRQASTDVEELEKIIVEESKKRVENRDL 555
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A835ZGD2_9STRA (ATP-dependent RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGD2_9STRA) HSP 1 Score: 140 bits (353), Expect = 5.100e-38 Identity = 66/98 (67.35%), Postives = 83/98 (84.69%), Query Frame = 1
Query: 1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKIIVD 294
VL+TTNVL+RGVDVPAV+LVVNYDMP LG S++ D ++YLHRIGRTGRFGR+GVAIN +QD++AY VLE I+RHFSP + M+R A D+EEL ++ D
Sbjct: 282 VLITTNVLARGVDVPAVTLVVNYDMPYLGRSKDPDYESYLHRIGRTGRFGRKGVAINFVQDNDAYSVLEQIERHFSPSKQMIRRAPDDMEELTNLVGD 379
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A7S2UVW1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVW1_9STRA) HSP 1 Score: 121 bits (304), Expect = 5.380e-30 Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 1
Query: 1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHA-STDVEELEKII 288
VL+TTNVL+RGVDVP+VSLV+NYD+P +R AD +TYLHRIGRTGRFGR+G AIN + DD+ +L +I+RHFSPG+ M+ A DVEELE++I
Sbjct: 491 VLVTTNVLARGVDVPSVSLVINYDLPVTYQNR-ADFETYLHRIGRTGRFGRKGCAINFVNDDQDQAILADIERHFSPGREMILQAPGDDVEELERVI 586
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A6V2XVD0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XVD0_HETAK) HSP 1 Score: 112 bits (279), Expect = 1.270e-26 Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = 1
Query: 1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHA-STDVEELEKII 288
VL++TNVL+RGVDVPAVSLVVNYD+PT + D ++YLHRIGRTGRFGR+GVAIN + ++ +LE I HFSP ++M+ A D+EELEKII
Sbjct: 443 VLISTNVLARGVDVPAVSLVVNYDIPTT-YDGQPDFESYLHRIGRTGRFGRKGVAINFVDNEHDKGLLEQIANHFSPARTMIFEAPGDDIEELEKII 538
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A7S1H2K6_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2K6_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.920e-26 Identity = 55/98 (56.12%), Postives = 69/98 (70.41%), Query Frame = 1
Query: 1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPD--TYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
VL+TTN+L+RGVDV V LVVNYD+P + PD TYLHRIGRTGRFGR+G AINLI D A VL I+ HFS G+ M+ +A D E+L +++
Sbjct: 45 VLITTNLLARGVDVDNVCLVVNYDVPV---DKNGGPDFETYLHRIGRTGRFGRKGTAINLISDQRAIEVLAAIEAHFSQGKEMIHNAPPDPEQLAEML 139
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: H0GNF2_SACCK (Dbp5p n=1 Tax=Saccharomyces cerevisiae x Saccharomyces kudriavzevii (strain VIN7) TaxID=1095631 RepID=H0GNF2_SACCK) HSP 1 Score: 108 bits (271), Expect = 4.030e-26 Identity = 53/96 (55.21%), Postives = 75/96 (78.12%), Query Frame = 1
Query: 1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
VL+TTNVL+RG+D+P VS+VVNYD+PTL A+ +ADP TY+HRIGRTGRFGR+GVAI+ + D ++ +L I ++F + M R + D +E+EKI+
Sbjct: 274 VLITTNVLARGIDIPTVSMVVNYDLPTL-ANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIE-MTRVPTDDWDEVEKIV 367
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A7S1UWV1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWV1_9STRA) HSP 1 Score: 108 bits (271), Expect = 4.200e-26 Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 1
Query: 1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
VL+TTN+L+RGVDV V LVVNYD+P + R D +TYLHRIGRTGRFGR+G AINLI D + VL I+ HFS GQ M+ +A D EEL ++I
Sbjct: 280 VLITTNLLARGVDVDNVMLVVNYDVP-VDKDRNPDFETYLHRIGRTGRFGRKGSAINLIDDQRSIEVLAAIEAHFSSGQEMIANAPADPEELAEMI 374
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A7H9HZM7_9SACH (Uncharacterized protein n=3 Tax=Torulaspora TaxID=4948 RepID=A0A7H9HZM7_9SACH) HSP 1 Score: 109 bits (273), Expect = 5.410e-26 Identity = 53/96 (55.21%), Postives = 74/96 (77.08%), Query Frame = 1
Query: 1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
VL+TTNVL+RG+D+P VS+VVNYD+PTL + DP TY+HRIGRTGRFGR+GVAI+ + D ++Y VL +I ++F + M R + D +E+EKI+
Sbjct: 364 VLITTNVLARGIDIPTVSMVVNYDLPTLPGG-QPDPSTYIHRIGRTGRFGRKGVAISFVHDKKSYNVLSSIQKYFGDIE-MTRVPTNDWDEVEKIV 457
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: G8BYK3_TETPH (Uncharacterized protein n=1 Tax=Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) TaxID=1071381 RepID=G8BYK3_TETPH) HSP 1 Score: 109 bits (273), Expect = 6.620e-26 Identity = 54/96 (56.25%), Postives = 76/96 (79.17%), Query Frame = 1
Query: 1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
VL+TTNVL+RG+D+P+VS+VVNYD+PT + EADP TY+HRIGRTGRFGR+GVAI+ + D +++RVL NI ++F + M R + D +E+E I+
Sbjct: 392 VLITTNVLARGIDIPSVSMVVNYDLPTT-LNGEADPATYIHRIGRTGRFGRKGVAISFVYDKQSFRVLSNIKKYFGDIE-MTRVPTDDWDEVETIV 485
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A7TPZ9_VANPO (Uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) TaxID=436907 RepID=A7TPZ9_VANPO) HSP 1 Score: 109 bits (272), Expect = 8.380e-26 Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = 1
Query: 1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
VL+TTNVL+RG+D+P VS+VVNYD+PT + +ADP TY+HRIGRTGRFGR+GVAI+ + D ++Y+VL NI +F + M R + D +E+EKI+
Sbjct: 379 VLITTNVLARGIDIPTVSMVVNYDLPT-SLNGQADPATYIHRIGRTGRFGRKGVAISFVHDKKSYQVLSNIKDYFGDIE-MTRVPTDDWDEVEKIV 472 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig130890.2234.1 >prot_H-elongata_contig130890.2234.1 ID=prot_H-elongata_contig130890.2234.1|Name=mRNA_H-elongata_contig130890.2234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp MTCPRWVHHEKLTRTRISTASVERGDSAAGVLPLTSSRTTRPTGCWKTLTback to top mRNA from alignment at H-elongata_contig130890:331..1373- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig130890.2234.1 ID=mRNA_H-elongata_contig130890.2234.1|Name=mRNA_H-elongata_contig130890.2234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-elongata_contig130890:331..1373- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig130890:331..1373- >mRNA_H-elongata_contig130890.2234.1 ID=mRNA_H-elongata_contig130890.2234.1|Name=mRNA_H-elongata_contig130890.2234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig130890:331..1373- (Himanthalia elongata Himel1 dioecious)back to top |