mRNA_H-elongata_contig130890.2234.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130890.2234.1
Unique NamemRNA_H-elongata_contig130890.2234.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A6H5KRZ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRZ7_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 5.630e-53
Identity = 92/109 (84.40%), Postives = 101/109 (92.66%), Query Frame = 1
Query:    1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKIIVDESKKRVFNRDI 327
            VLLTTNVLSRGVDVPAVSLVVNYDMPT+G S++ DPDTYLHRIGRTGRFGRRGVAINLIQDD  +RV+E+IDRHFSP  SM+R ASTDVEELEKIIV+ESKKRV NRD+
Sbjct:  447 VLLTTNVLSRGVDVPAVSLVVNYDMPTMGYSQDPDPDTYLHRIGRTGRFGRRGVAINLIQDDSTFRVMESIDRHFSPTGSMLRQASTDVEELEKIIVEESKKRVENRDL 555          
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A835ZGD2_9STRA (ATP-dependent RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGD2_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.100e-38
Identity = 66/98 (67.35%), Postives = 83/98 (84.69%), Query Frame = 1
Query:    1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKIIVD 294
            VL+TTNVL+RGVDVPAV+LVVNYDMP LG S++ D ++YLHRIGRTGRFGR+GVAIN +QD++AY VLE I+RHFSP + M+R A  D+EEL  ++ D
Sbjct:  282 VLITTNVLARGVDVPAVTLVVNYDMPYLGRSKDPDYESYLHRIGRTGRFGRKGVAINFVQDNDAYSVLEQIERHFSPSKQMIRRAPDDMEELTNLVGD 379          
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A7S2UVW1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVW1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.380e-30
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 1
Query:    1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHA-STDVEELEKII 288
            VL+TTNVL+RGVDVP+VSLV+NYD+P    +R AD +TYLHRIGRTGRFGR+G AIN + DD+   +L +I+RHFSPG+ M+  A   DVEELE++I
Sbjct:  491 VLVTTNVLARGVDVPSVSLVINYDLPVTYQNR-ADFETYLHRIGRTGRFGRKGCAINFVNDDQDQAILADIERHFSPGREMILQAPGDDVEELERVI 586          
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A6V2XVD0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2XVD0_HETAK)

HSP 1 Score: 112 bits (279), Expect = 1.270e-26
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = 1
Query:    1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHA-STDVEELEKII 288
            VL++TNVL+RGVDVPAVSLVVNYD+PT     + D ++YLHRIGRTGRFGR+GVAIN + ++    +LE I  HFSP ++M+  A   D+EELEKII
Sbjct:  443 VLISTNVLARGVDVPAVSLVVNYDIPTT-YDGQPDFESYLHRIGRTGRFGRKGVAINFVDNEHDKGLLEQIANHFSPARTMIFEAPGDDIEELEKII 538          
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A7S1H2K6_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2K6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.920e-26
Identity = 55/98 (56.12%), Postives = 69/98 (70.41%), Query Frame = 1
Query:    1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPD--TYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
            VL+TTN+L+RGVDV  V LVVNYD+P     +   PD  TYLHRIGRTGRFGR+G AINLI D  A  VL  I+ HFS G+ M+ +A  D E+L +++
Sbjct:   45 VLITTNLLARGVDVDNVCLVVNYDVPV---DKNGGPDFETYLHRIGRTGRFGRKGTAINLISDQRAIEVLAAIEAHFSQGKEMIHNAPPDPEQLAEML 139          
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: H0GNF2_SACCK (Dbp5p n=1 Tax=Saccharomyces cerevisiae x Saccharomyces kudriavzevii (strain VIN7) TaxID=1095631 RepID=H0GNF2_SACCK)

HSP 1 Score: 108 bits (271), Expect = 4.030e-26
Identity = 53/96 (55.21%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
            VL+TTNVL+RG+D+P VS+VVNYD+PTL A+ +ADP TY+HRIGRTGRFGR+GVAI+ + D  ++ +L  I ++F   + M R  + D +E+EKI+
Sbjct:  274 VLITTNVLARGIDIPTVSMVVNYDLPTL-ANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIE-MTRVPTDDWDEVEKIV 367          
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A7S1UWV1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWV1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.200e-26
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
            VL+TTN+L+RGVDV  V LVVNYD+P +   R  D +TYLHRIGRTGRFGR+G AINLI D  +  VL  I+ HFS GQ M+ +A  D EEL ++I
Sbjct:  280 VLITTNLLARGVDVDNVMLVVNYDVP-VDKDRNPDFETYLHRIGRTGRFGRKGSAINLIDDQRSIEVLAAIEAHFSSGQEMIANAPADPEELAEMI 374          
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A0A7H9HZM7_9SACH (Uncharacterized protein n=3 Tax=Torulaspora TaxID=4948 RepID=A0A7H9HZM7_9SACH)

HSP 1 Score: 109 bits (273), Expect = 5.410e-26
Identity = 53/96 (55.21%), Postives = 74/96 (77.08%), Query Frame = 1
Query:    1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
            VL+TTNVL+RG+D+P VS+VVNYD+PTL    + DP TY+HRIGRTGRFGR+GVAI+ + D ++Y VL +I ++F   + M R  + D +E+EKI+
Sbjct:  364 VLITTNVLARGIDIPTVSMVVNYDLPTLPGG-QPDPSTYIHRIGRTGRFGRKGVAISFVHDKKSYNVLSSIQKYFGDIE-MTRVPTNDWDEVEKIV 457          
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: G8BYK3_TETPH (Uncharacterized protein n=1 Tax=Tetrapisispora phaffii (strain ATCC 24235 / CBS 4417 / NBRC 1672 / NRRL Y-8282 / UCD 70-5) TaxID=1071381 RepID=G8BYK3_TETPH)

HSP 1 Score: 109 bits (273), Expect = 6.620e-26
Identity = 54/96 (56.25%), Postives = 76/96 (79.17%), Query Frame = 1
Query:    1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
            VL+TTNVL+RG+D+P+VS+VVNYD+PT   + EADP TY+HRIGRTGRFGR+GVAI+ + D +++RVL NI ++F   + M R  + D +E+E I+
Sbjct:  392 VLITTNVLARGIDIPSVSMVVNYDLPTT-LNGEADPATYIHRIGRTGRFGRKGVAISFVYDKQSFRVLSNIKKYFGDIE-MTRVPTDDWDEVETIV 485          
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Match: A7TPZ9_VANPO (Uncharacterized protein n=1 Tax=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) TaxID=436907 RepID=A7TPZ9_VANPO)

HSP 1 Score: 109 bits (272), Expect = 8.380e-26
Identity = 54/96 (56.25%), Postives = 75/96 (78.12%), Query Frame = 1
Query:    1 VLLTTNVLSRGVDVPAVSLVVNYDMPTLGASREADPDTYLHRIGRTGRFGRRGVAINLIQDDEAYRVLENIDRHFSPGQSMVRHASTDVEELEKII 288
            VL+TTNVL+RG+D+P VS+VVNYD+PT   + +ADP TY+HRIGRTGRFGR+GVAI+ + D ++Y+VL NI  +F   + M R  + D +E+EKI+
Sbjct:  379 VLITTNVLARGIDIPTVSMVVNYDLPT-SLNGQADPATYIHRIGRTGRFGRKGVAISFVHDKKSYQVLSNIKDYFGDIE-MTRVPTDDWDEVEKIV 472          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130890.2234.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRZ7_9PHAE5.630e-5384.40Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZGD2_9STRA5.100e-3867.35ATP-dependent RNA helicase n=1 Tax=Tribonema minus... [more]
A0A7S2UVW1_9STRA5.380e-3062.89Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V2XVD0_HETAK1.270e-2660.82Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1H2K6_9STRA1.920e-2656.12Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
H0GNF2_SACCK4.030e-2655.21Dbp5p n=1 Tax=Saccharomyces cerevisiae x Saccharom... [more]
A0A7S1UWV1_9STRA4.200e-2659.38Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7H9HZM7_9SACH5.410e-2655.21Uncharacterized protein n=3 Tax=Torulaspora TaxID=... [more]
G8BYK3_TETPH6.620e-2656.25Uncharacterized protein n=1 Tax=Tetrapisispora pha... [more]
A7TPZ9_VANPO8.380e-2656.25Uncharacterized protein n=1 Tax=Vanderwaltozyma po... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130890contigH-elongata_contig130890:331..1373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130890.2234.1prot_H-elongata_contig130890.2234.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130890 372..1306 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.4840314-UTR-H-elongata_contig130890:330..3711622929777.4840314-UTR-H-elongata_contig130890:330..371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130890 331..371 -
1691679153.9039774-UTR-H-elongata_contig130890:330..3711691679153.9039774-UTR-H-elongata_contig130890:330..371Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130890 331..371 -
1622929777.5315197-UTR-H-elongata_contig130890:1306..13731622929777.5315197-UTR-H-elongata_contig130890:1306..1373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130890 1307..1373 -
1691679153.931832-UTR-H-elongata_contig130890:1306..13731691679153.931832-UTR-H-elongata_contig130890:1306..1373Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130890 1307..1373 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929777.4989138-CDS-H-elongata_contig130890:371..4771622929777.4989138-CDS-H-elongata_contig130890:371..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130890 372..477 -
1691679153.9121068-CDS-H-elongata_contig130890:371..4771691679153.9121068-CDS-H-elongata_contig130890:371..477Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130890 372..477 -
1622929777.5158663-CDS-H-elongata_contig130890:1193..13061622929777.5158663-CDS-H-elongata_contig130890:1193..1306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130890 1194..1306 -
1691679153.922337-CDS-H-elongata_contig130890:1193..13061691679153.922337-CDS-H-elongata_contig130890:1193..1306Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130890 1194..1306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130890.2234.1

>prot_H-elongata_contig130890.2234.1 ID=prot_H-elongata_contig130890.2234.1|Name=mRNA_H-elongata_contig130890.2234.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MTCPRWVHHEKLTRTRISTASVERGDSAAGVLPLTSSRTTRPTGCWKTLT
GISPQGSPWCDTRARTWRSSRR*
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mRNA from alignment at H-elongata_contig130890:331..1373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130890.2234.1 ID=mRNA_H-elongata_contig130890.2234.1|Name=mRNA_H-elongata_contig130890.2234.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1043bp|location=Sequence derived from alignment at H-elongata_contig130890:331..1373- (Himanthalia elongata Himel1 dioecious)
GTTTTGCTAACCACAAACGTTCTGTCGAGAGGGGTGGACGTCCCCGCTGT GTCTCTAGTAGTGAACTATGACATGCCCACGCTGGGTGCATCACGAGAAG CTGACCCGGACACGTATCTCCACCGCATCGGTCGAACGGGGCGATTCGGC CGCAGGGGTGTTGCCATTAACCTCATCCAGGTGCGGGTTTTGTTCGCGGA AATAGGGGTCAGGCGAGGGCAGTGGGGGAGGGGCGAGGGGGAGGGGGGAA TTGAAGTGTTGACCCCTGCTTTCATGGTGCCCCTTTTCAGAGAGTAGTAC CCGCCGGCGCGCGCGCGCGATTTTTCTGCGTTTTTCGGTGCGCAAAAGAT GCATCAGGAACACCGGGGACACTTGGGGTAGATCCCCGTCCCACTGTTGA GGCGTGTTGCCCATGATAGCCACGCGGTCTCCTCTGCGGTTATATTCGAG ATTTGAGCCTTCTCGCGAAACGATTGCGGTGACGACTCGAATTTTGTACC GCAGCTCTTTGAGACTGTTTTACGCGTTTGTGCCCAACGGCCATATCTTG GGATTCTCAATGCAAAGGATTGTGGCTGGTGCTTAGTGGCTGGACCTTAC GAGGGATTTTTGTTCCGGTTTTGGATGCTTTTTGGGGCGCACAGTGGAGG TTGTAATCCAAGACGCGACCTTCGCAACTATTTGGGCTCACTAGCAGGAC TGGCAGAAGATGGTTTTATCGCCGGCTCTGTTACGTCATCGTAGTTCATC ACGGAAAGACAATTACGTAAAAGGGTGTAAATCAATACATGTGTGATATA CTGTAATGTTATATTTCTCAAATATTTACACATGCTGTTTACAACAATGC GGCGCGCTATCGCGTGTGTCGGCCGCCTCCCTGCCCCATCCCGAAGGACG ACGAGGCCTACAGGGTGTTGGAAAACATTGACAGGCATTTCTCCCCAGGG CAGTCCATGGTGCGACACGCGAGCACGGACGTGGAGGAGCTCGAGAAGAT AATCGTGGATGAGTCCAAAAAGCGGGTCTTCAACAGGGATATA
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Coding sequence (CDS) from alignment at H-elongata_contig130890:331..1373-

>mRNA_H-elongata_contig130890.2234.1 ID=mRNA_H-elongata_contig130890.2234.1|Name=mRNA_H-elongata_contig130890.2234.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig130890:331..1373- (Himanthalia elongata Himel1 dioecious)
ATGACATGCCCACGCTGGGTGCATCACGAGAAGCTGACCCGGACACGTAT
CTCCACCGCATCGGTCGAACGGGGCGATTCGGCCGCAGGGGTGTTGCCAT
TAACCTCATCCAGATGACATGCCCACGCTGGGTGCATCACGAGAAGCTGA
CCCGGACACGTATCTCCACCGCATCGGTCGAACGGGGCGATTCGGCCGCA
GGGGTGTTGCCATTAACCTCATCCAGGACGACGAGGCCTACAGGGTGTTG
GAAAACATTGACAGGCATTTCTCCCCAGGGCAGTCCATGGTGCGACACGC
GAGCACGGACGTGGAGGAGCTCGAGAAGATAAGACGACGAGGCCTACAGG
GTGTTGGAAAACATTGACAGGCATTTCTCCCCAGGGCAGTCCATGGTGCG
ACACGCGAGCACGGACGTGGAGGAGCTCGAGAAGATAA
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