mRNA_H-elongata_contig130678.2222.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig130678.2222.1
Unique NamemRNA_H-elongata_contig130678.2222.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: D7G2G8_ECTSI (Glucose-methanol-choline oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2G8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 8.440e-30
Identity = 64/107 (59.81%), Postives = 75/107 (70.09%), Query Frame = 1
Query:    1 PMEVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGR 321
            P   + VDCDFL+VGAGSSGCVLASRLVR GLKVL+VEKG  DA+ L ++V RPS ++   +    L E F TVPQ  L  R + A  G GGGGSSN+N GLY RGR
Sbjct:    6 PTADDTVDCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADASTLAKVVGRPSGWVHQASSGEGLSEAFNTVPQAGLGYRELPAYNGVGGGGSSNVNAGLYQRGR 112          
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A7W6DPT1_9RHOB (Choline dehydrogenase n=3 Tax=Rhodobacterales TaxID=204455 RepID=A0A7W6DPT1_9RHOB)

HSP 1 Score: 76.6 bits (187), Expect = 4.620e-14
Identity = 42/109 (38.53%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 PMEVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGRCA 327
            P + +  D D++++GAGS+GCVLA+RL   G +VL++E G  DA     ++  P + +E     +     + TVPQ N  NR+++ PRG   GGSS++NG +Y RG  +
Sbjct:   39 PADAQETDHDYVIIGAGSAGCVLANRLTEDGARVLLLEAGGPDA---DAMISTPMRLIEL--WGTDFDWGYQTVPQENAANRQLYWPRGKTLGGSSSLNGMIYVRGNAS 142          
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A0Q6TCZ3_9BURK (GMC family oxidoreductase n=3 Tax=Burkholderiales TaxID=80840 RepID=A0A0Q6TCZ3_9BURK)

HSP 1 Score: 75.1 bits (183), Expect = 1.590e-13
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   28 DFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETV-TGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGRCA 327
            D+++VGAGS+GCV+A RL++ G  VL++E G TDA+K  ++   P+ F+  + T RS + E   T PQ +   R+M+ P+G   GG S++N  +Y RG  A
Sbjct:    3 DYIVVGAGSAGCVIAHRLIKAGHSVLLLEAGPTDASKFVKM---PATFVRVIGTERSWVYE---TTPQQHANGRKMYVPQGRMNGGGSSLNAMVYIRGAAA 97          
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A7C8HKW1_9CAUL (Choline dehydrogenase n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A7C8HKW1_9CAUL)

HSP 1 Score: 74.7 bits (182), Expect = 2.190e-13
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1
Query:   28 DFLLVGAGSSGCVLASRLVRRGL-KVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
            D+++VGAGS+GCVLA+RL   G  +V ++E G  D++ L R+     + + T   ++P    F T PQ +  NRRM  PRG G GGSS+ING +Y RG
Sbjct:   11 DYVIVGAGSAGCVLAARLSEDGAARVALLEAGPKDSSLLVRMPAGAGRLIPT---KNPQNWGFWTEPQAHCDNRRMFWPRGKGWGGSSSINGMIYIRG 105          
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A1E4GT31_9CAUL (Choline dehydrogenase n=1 Tax=Phenylobacterium sp. SCN 70-31 TaxID=1660129 RepID=A0A1E4GT31_9CAUL)

HSP 1 Score: 74.3 bits (181), Expect = 2.990e-13
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1
Query:   28 DFLLVGAGSSGCVLASRLVRRGL-KVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
            D++++GAGS+GCVLA+RL   G  KVL++E G  D + +   V  P+     ++ ++P    F T P+ NL NR++  PRG G GGSS+ING +Y RG
Sbjct:    6 DYIVIGAGSAGCVLANRLTEDGTTKVLLLEAGGKDKSLM---VTMPAGVGGLISKQNPFNWGFWTEPEPNLDNRKLWWPRGKGWGGSSSINGMIYIRG 100          
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A1S8FCU1_9BURK (GMC family oxidoreductase n=6 Tax=Comamonadaceae TaxID=80864 RepID=A0A1S8FCU1_9BURK)

HSP 1 Score: 73.9 bits (180), Expect = 4.050e-13
Identity = 46/109 (42.20%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    4 MEVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETV-TGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRGRCA 327
            ME + VD  +++VGAGS+GCV+A RLV+ G  VL++E G TDA+K  ++   P+ F+  + T RS + E   TV Q +   R+M+ P+G   GG S++N  +Y RG  A
Sbjct:    1 METQVVD--YIVVGAGSAGCVIAYRLVKAGHSVLLLEAGPTDASKFVKM---PATFVRVIGTERSWIYE---TVAQPHANGRKMYVPQGRMTGGGSSLNAMVYIRGTAA 101          
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A520TWP5_9GAMM (Choline dehydrogenase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A520TWP5_9GAMM)

HSP 1 Score: 73.9 bits (180), Expect = 4.070e-13
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   28 DFLLVGAGSSGCVLASRLVRRGLK-VLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
            D+++VGAGSSGCV+A+RL   G K VLI+E G  D       +  PS F + V  +S L   F T P+    NR+++ PRG G GGSS+IN  +Y RG
Sbjct:    6 DYVVVGAGSSGCVMANRLSEDGKKSVLILEAGGKDT---NFFIHMPSGFSQIVPNKSDLNYGFETEPEETTDNRKLYWPRGRGWGGSSSINAMVYIRG 100          
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A4R1YTY7_9RHOB (Choline dehydrogenase n=1 Tax=Rhodovulum steppense TaxID=540251 RepID=A0A4R1YTY7_9RHOB)

HSP 1 Score: 73.6 bits (179), Expect = 5.560e-13
Identity = 46/100 (46.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:   19 VDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
            ++ DF++VGAGS+GCVLASRL   G  VL++E G TDA   G L+  P+  L      +     F T P+ +L  RR+  PRG   GGSS+ING +Y RG
Sbjct:    1 MEADFVIVGAGSAGCVLASRLSETGASVLVIEHGGTDA---GPLIQMPAA-LSYPMNMARYDWGFRTEPEPHLGGRRLACPRGKVIGGSSSINGMVYVRG 96          
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A1V1PTS8_9PROT (Choline dehydrogenase n=1 Tax=alpha proteobacterium U9-1i TaxID=1605283 RepID=A0A1V1PTS8_9PROT)

HSP 1 Score: 73.6 bits (179), Expect = 5.570e-13
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   28 DFLLVGAGSSGCVLASRLVRRG-LKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
            D+++VGAGS+GCVLA+RL     +KV I+E G  +A   G LV  P+     +  +      F TVPQ ++  RR++ PRG G GGSS+ING +Y RG
Sbjct:   11 DYVIVGAGSAGCVLANRLSEDPTVKVAILEAGGANA---GLLVKMPAGVGNLIASKGASNWGFETVPQAHMDGRRLYQPRGRGWGGSSSINGMIYIRG 105          
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Match: A0A3E0LJ55_9CHRO (Choline dehydrogenase n=6 Tax=Bacteria TaxID=2 RepID=A0A3E0LJ55_9CHRO)

HSP 1 Score: 72.8 bits (177), Expect = 1.040e-12
Identity = 42/98 (42.86%), Postives = 63/98 (64.29%), Query Frame = 1
Query:   28 DFLLVGAGSSGCVLASRLVRR-GLKVLIVEKGTTDAAKLGRLVLRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGGLYFRG 318
            D++++GAGS+GCVLA+RL     ++VL++E G  D + L R+   P+     + G++     F T PQ +L NR ++ PRG G GGSS+ING +Y RG
Sbjct:   11 DYIIIGAGSAGCVLANRLSEDPSVRVLVLEAGGRDNSFLVRM---PAGVGTLIKGKNAHNWAFTTEPQTHLNNRPLYWPRGKGWGGSSSINGMIYIRG 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig130678.2222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2G8_ECTSI8.440e-3059.81Glucose-methanol-choline oxidoreductase n=2 Tax=Ec... [more]
A0A7W6DPT1_9RHOB4.620e-1438.53Choline dehydrogenase n=3 Tax=Rhodobacterales TaxI... [more]
A0A0Q6TCZ3_9BURK1.590e-1341.58GMC family oxidoreductase n=3 Tax=Burkholderiales ... [more]
A0A7C8HKW1_9CAUL2.190e-1344.90Choline dehydrogenase n=2 Tax=Alphaproteobacteria ... [more]
A0A1E4GT31_9CAUL2.990e-1343.88Choline dehydrogenase n=1 Tax=Phenylobacterium sp.... [more]
A0A1S8FCU1_9BURK4.050e-1342.20GMC family oxidoreductase n=6 Tax=Comamonadaceae T... [more]
A0A520TWP5_9GAMM4.070e-1345.92Choline dehydrogenase n=2 Tax=Gammaproteobacteria ... [more]
A0A4R1YTY7_9RHOB5.560e-1346.00Choline dehydrogenase n=1 Tax=Rhodovulum steppense... [more]
A0A1V1PTS8_9PROT5.570e-1344.90Choline dehydrogenase n=1 Tax=alpha proteobacteriu... [more]
A0A3E0LJ55_9CHRO1.040e-1242.86Choline dehydrogenase n=6 Tax=Bacteria TaxID=2 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig130678contigH-elongata_contig130678:427..753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.6e-25
Seed eggNOG ortholog2880.D7G2G8
EggNOG free text desc.flavin adenine dinucleotide binding
EggNOG OGsCOG2303@1,KOG1238@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlucose-methanol-choline oxidoreductase
Ec32 orthologEc-00_005920.1
Exons1
Model size327
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.4672086-CDS-H-elongata_contig130678:426..7501622929776.4672086-CDS-H-elongata_contig130678:426..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130678 427..750 -
1691679153.5144484-CDS-H-elongata_contig130678:426..7501691679153.5144484-CDS-H-elongata_contig130678:426..750Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig130678 427..750 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929776.4792867-UTR-H-elongata_contig130678:750..7531622929776.4792867-UTR-H-elongata_contig130678:750..753Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130678 751..753 -
1691679153.5272524-UTR-H-elongata_contig130678:750..7531691679153.5272524-UTR-H-elongata_contig130678:750..753Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig130678 751..753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig130678.2222.1prot_H-elongata_contig130678.2222.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig130678 427..750 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig130678.2222.1

>prot_H-elongata_contig130678.2222.1 ID=prot_H-elongata_contig130678.2222.1|Name=mRNA_H-elongata_contig130678.2222.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
MEVEPVDCDFLLVGAGSSGCVLASRLVRRGLKVLIVEKGTTDAAKLGRLV
LRPSKFLETVTGRSPLVEKFVTVPQVNLFNRRMHAPRGCGGGGSSNINGG
LYFRGRCA
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mRNA from alignment at H-elongata_contig130678:427..753-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig130678.2222.1 ID=mRNA_H-elongata_contig130678.2222.1|Name=mRNA_H-elongata_contig130678.2222.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig130678:427..753- (Himanthalia elongata Himel1 dioecious)
CCGATGGAGGTTGAACCTGTTGACTGCGACTTTCTTCTTGTGGGCGCGGG CTCTAGTGGATGCGTCCTGGCTTCAAGACTTGTGCGGCGCGGTCTGAAGG TGTTAATAGTCGAAAAGGGCACGACCGATGCTGCGAAACTCGGCAGGCTC GTGCTCAGGCCCTCGAAGTTCCTAGAGACCGTCACTGGTCGGAGTCCGCT GGTGGAAAAGTTTGTGACCGTTCCTCAGGTAAATCTATTCAACCGGCGCA TGCACGCTCCACGAGGATGCGGAGGTGGAGGTTCAAGTAACATCAACGGG GGTCTATACTTTCGTGGGAGGTGCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig130678:427..753-

>mRNA_H-elongata_contig130678.2222.1 ID=mRNA_H-elongata_contig130678.2222.1|Name=mRNA_H-elongata_contig130678.2222.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig130678:427..753- (Himanthalia elongata Himel1 dioecious)
ATGGAGGTTGAACCTGTTGACTGCGACTTTCTTCTTGTGGGCGCGGGCTC
TAGTGGATGCGTCCTGGCTTCAAGACTTGTGCGGCGCGGTCTGAAGGTGT
TAATAGTCGAAAAGGGCACGACCGATGCTGCGAAACTCGGCAGGCTCGTG
CTCAGGCCCTCGAAGTTCCTAGAGACCGTCACTGGTCGGAGTCCGCTGGT
GGAAAAGTTTGTGACCGTTCCTCAGGTAAATCTATTCAACCGGCGCATGC
ACGCTCCACGAGGATGCGGAGGTGGAGGTTCAAGTAACATCAACGGGGGT
CTATACTTTCGTGGGAGGTGCGCCATGGAGGTTGAACCTGTTGACTGCGA
CTTTCTTCTTGTGGGCGCGGGCTCTAGTGGATGCGTCCTGGCTTCAAGAC
TTGTGCGGCGCGGTCTGAAGGTGTTAATAGTCGAAAAGGGCACGACCGAT
GCTGCGAAACTCGGCAGGCTCGTGCTCAGGCCCTCGAAGTTCCTAGAGAC
CGTCACTGGTCGGAGTCCGCTGGTGGAAAAGTTTGTGACCGTTCCTCAGG
TAAATCTATTCAACCGGCGCATGCACGCTCCACGAGGATGCGGAGGTGGA
GGTTCAAGTAACATCAACGGGGGTCTATACTTTCGTGGGAGGTGCGCC
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